Porcine KLF gene family: Structure, mapping, and phylogenetic analysis.

Abstract:

:The Kruppel-like factors (KLFs) belong to the family of zinc finger-containing transcription factors that regulates a diverse array of cellular processes, including cell proliferation, differentiation, and apoptosis. Here we reported the structure, mapping and phylogenetic analysis of KLF gene family in pigs. Comparative analyses revealed strong conservation between pig and human KLFs at the genomic and protein structure levels. Porcine KLF 1-17 were dispersedly located on chromosomes 1, 2, 3, 4, 6, 7, 8, 10, 11, 15, 18 and X, respectively. Based on the phylogenetic analysis, we proposed that KLFs have undergone extensive expansion over the course of evolution. Finally, we identified a characteristic motif in KLF zinc finger domains that can be used to accurately predict potential KLF proteins. The current work represents the first comprehensive study of KLF genes in pigs and provides a foundation for future studies concerning structural, functional, and evolutionary analyses of KLF gene family.

journal_name

Genomics

journal_title

Genomics

authors

Chen Z,Lei T,Chen X,Zhang J,Yu A,Long Q,Long H,Jin D,Gan L,Yang Z

doi

10.1016/j.ygeno.2009.11.001

subject

Has Abstract

pub_date

2010-02-01 00:00:00

pages

111-9

issue

2

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(09)00253-5

journal_volume

95

pub_type

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