Transgenic mice with defined combinations of drug-inducible reprogramming factors.

Abstract:

:Proviruses carrying drug-inducible Oct4, Sox2, Klf4 and c-Myc used to derive 'primary' induced pluripotent stem (iPS) cells were segregated through germline transmission, generating mice and cells carrying subsets of the reprogramming factors. Drug treatment produced 'secondary' iPS cells only when the missing factor was introduced. This approach creates a defined system for studying reprogramming mechanisms and allows screening of genetically homogeneous cells for compounds that can replace any transcription factor required for iPS cell derivation.

journal_name

Nat Biotechnol

journal_title

Nature biotechnology

authors

Markoulaki S,Hanna J,Beard C,Carey BW,Cheng AW,Lengner CJ,Dausman JA,Fu D,Gao Q,Wu S,Cassady JP,Jaenisch R

doi

10.1038/nbt.1520

subject

Has Abstract

pub_date

2009-02-01 00:00:00

pages

169-71

issue

2

eissn

1087-0156

issn

1546-1696

pii

nbt.1520

journal_volume

27

pub_type

杂志文章
  • Publisher Correction: OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41587-020-0457-8

    authors: Röst HL,Rosenberger G,Navarro P,Gillet L,Miladinović SM,Schubert OT,Wolski W,Collins BC,Malmström J,Malmström L,Aebersold R

    更新日期:2020-03-01 00:00:00

  • Low probability of chloroplast movement from oilseed rape (Brassica napus) into wild Brassica rapa.

    abstract::Pollen-mediated movement of transgenes from transplastomic oilseed rape (Brassica napus) into wild relatives will be avoided if chloroplasts are maternally transmitted. We assess the probability of chloroplast exchange between conventional oilseed rape and wild Brassica rapa to model the future behavior of transplasto...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/7952

    authors: Scott SE,Wilkinson MJ

    更新日期:1999-04-01 00:00:00

  • Cloned transgenic cattle produce milk with higher levels of beta-casein and kappa-casein.

    abstract::To enhance milk composition and milk processing efficiency by increasing the casein concentration in milk, we have introduced additional copies of the genes encoding bovine beta- and kappa-casein (CSN2 and CSN3, respectively) into female bovine fibroblasts. Nuclear transfer with four independent donor cell lines resul...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt783

    authors: Brophy B,Smolenski G,Wheeler T,Wells D,L'Huillier P,Laible G

    更新日期:2003-02-01 00:00:00

  • Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.

    abstract::The identification of co-regulated genes and their transcription-factor binding sites (TFBS) are key steps toward understanding transcription regulation. In addition to effective laboratory assays, various computational approaches for the detection of TFBS in promoter regions of coexpressed genes have been developed. ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt802

    authors: Qin ZS,McCue LA,Thompson W,Mayerhofer L,Lawrence CE,Liu JS

    更新日期:2003-04-01 00:00:00

  • Flexibility--the guiding principle for antibody manufacturing.

    abstract::Ensuring adequate manufacturing capacity for recombinant and monoclonal antibodies is one of the greatest challenges facing the biotech industry. The following factors should be taken into account when designing product development and production strategies. ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0905-1054

    authors: Carson KL

    更新日期:2005-09-01 00:00:00

  • Homology-driven genome editing in hematopoietic stem and progenitor cells using ZFN mRNA and AAV6 donors.

    abstract::Genome editing with targeted nucleases and DNA donor templates homologous to the break site has proven challenging in human hematopoietic stem and progenitor cells (HSPCs), and particularly in the most primitive, long-term repopulating cell population. Here we report that combining electroporation of zinc finger nucle...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3408

    authors: Wang J,Exline CM,DeClercq JJ,Llewellyn GN,Hayward SB,Li PW,Shivak DA,Surosky RT,Gregory PD,Holmes MC,Cannon PM

    更新日期:2015-12-01 00:00:00

  • A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments.

    abstract::Thermostable enzymes combine catalytic specificity with the toughness required to withstand industrial reaction conditions. Stabilized enzymes also provide robust starting points for evolutionary improvement of other protein properties. We recently created a library of at least 2,300 new active chimeras of the biotech...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1333

    authors: Li Y,Drummond DA,Sawayama AM,Snow CD,Bloom JD,Arnold FH

    更新日期:2007-09-01 00:00:00

  • Tumor refractoriness to anti-VEGF treatment is mediated by CD11b+Gr1+ myeloid cells.

    abstract::Vascular endothelial growth factor (VEGF) is an essential regulator of normal and abnormal blood vessel growth. A monoclonal antibody (mAb) that targets VEGF suppresses tumor growth in murine cancer models and human patients. We investigated cellular and molecular events that mediate refractoriness of tumors to anti-a...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1323

    authors: Shojaei F,Wu X,Malik AK,Zhong C,Baldwin ME,Schanz S,Fuh G,Gerber HP,Ferrara N

    更新日期:2007-08-01 00:00:00

  • Induction of human cytotoxic T lymphocytes by artificial antigen-presenting cells.

    abstract::The adoptive transfer of antigen-specific cytotoxic T lymphocytes (CTLs) is a promising therapeutic approach for a number of diseases. To overcome the difficulty in generating specific CTLs, we established stable artificial antigen-presenting cells (AAPCs) that can be used to stimulate T cells of any patient of a give...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/74455

    authors: Latouche JB,Sadelain M

    更新日期:2000-04-01 00:00:00

  • Resistance gene cloning from a wild crop relative by sequence capture and association genetics.

    abstract::Disease resistance (R) genes from wild relatives could be used to engineer broad-spectrum resistance in domesticated crops. We combined association genetics with R gene enrichment sequencing (AgRenSeq) to exploit pan-genome variation in wild diploid wheat and rapidly clone four stem rust resistance genes. AgRenSeq ena...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-018-0007-9

    authors: Arora S,Steuernagel B,Gaurav K,Chandramohan S,Long Y,Matny O,Johnson R,Enk J,Periyannan S,Singh N,Asyraf Md Hatta M,Athiyannan N,Cheema J,Yu G,Kangara N,Ghosh S,Szabo LJ,Poland J,Bariana H,Jones JDG,Bentley AR,A

    更新日期:2019-02-01 00:00:00

  • Prevention of systemic lupus erythematosus in MRL/lpr mice by administration of an immunoglobulin-binding peptide.

    abstract::Systemic lupus erythematosus (SLE) is a multisystem chronic inflammatory disease of unknown etiology that affects many organs, including the kidney. The presence of multiple autoantibodies and other immunological abnormalities point to basic defects in immunoregulatory controls that normally maintain self-tolerance. T...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/77296

    authors: Marino M,Ruvo M,De Falco S,Fassina G

    更新日期:2000-07-01 00:00:00

  • Engineered off-the-shelf therapeutic T cells resist host immune rejection.

    abstract::Engineered T cells are effective therapies against a range of malignancies, but current approaches rely on autologous T cells, which are difficult and expensive to manufacture. Efforts to develop potent allogeneic T cells that are not rejected by the recipient's immune system require abrogating both T- and natural kil...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-020-0601-5

    authors: Mo F,Watanabe N,McKenna MK,Hicks MJ,Srinivasan M,Gomes-Silva D,Atilla E,Smith T,Ataca Atilla P,Ma R,Quach D,Heslop HE,Brenner MK,Mamonkin M

    更新日期:2021-01-01 00:00:00

  • High-throughput measurement of single-cell growth rates using serial microfluidic mass sensor arrays.

    abstract::Methods to rapidly assess cell growth would be useful for many applications, including drug susceptibility testing, but current technologies have limited sensitivity or throughput. Here we present an approach to precisely and rapidly measure growth rates of many individual cells simultaneously. We flow cells in suspen...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3666

    authors: Cermak N,Olcum S,Delgado FF,Wasserman SC,Payer KR,A Murakami M,Knudsen SM,Kimmerling RJ,Stevens MM,Kikuchi Y,Sandikci A,Ogawa M,Agache V,Baléras F,Weinstock DM,Manalis SR

    更新日期:2016-10-01 00:00:00

  • Selection for a periplasmic factor improving phage display and functional periplasmic expression.

    abstract::The efficiency of both phage display in Escherichia coli and periplasmic expression of recombinant proteins may be limited by the same periplasmic folding steps. To search for E. coli factors that improve the efficiency of both procedures, a library of E. coli proteins was coexpressed in a phagemid vector that contain...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0498-376

    authors: Bothmann H,Plückthun A

    更新日期:1998-04-01 00:00:00

  • Directed evolution of proteins by exon shuffling.

    abstract::Evolution of eukaryotes is mediated by sexual recombination of parental genomes. Crossovers occur in random, but homologous, positions at a frequency that depends on DNA length. As exons occupy only 1% of the human genome and introns about 24%, by far most of the crossovers occur between exons, rather than inside. The...

    journal_title:Nature biotechnology

    pub_type: 杂志文章,评审

    doi:10.1038/88084

    authors: Kolkman JA,Stemmer WP

    更新日期:2001-05-01 00:00:00

  • Antibodies engineered with IgD specificity efficiently deliver integrated T-cell epitopes for antigen presentation by B cells.

    abstract::We have developed a strategy for improving the stimulation of T cells during immune responses by constructing recombinant antibodies that enhance the delivery of antigen to antigen-presenting cells, such as B cells. These antibodies have variable regions specific for surface molecules on B cells, and a constant region...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/10883

    authors: Lunde E,Munthe LA,Vabø A,Sandlie I,Bogen B

    更新日期:1999-07-01 00:00:00

  • Resolution of cutaneous inflammation after local elimination of macrophages.

    abstract::We constructed an immunotoxin, composed of an antibody directed against the high-affinity IgG receptor CD64 and Ricin-A, with the aim of resolving chronic inflammation through elimination of activated macrophages. In vitro, this immunotoxin proved very efficient in inducing apoptosis in activated macrophages, leaving ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/71908

    authors: Thepen T,van Vuuren AJ,Kiekens RC,Damen CA,Vooijs WC,van De Winkel JG

    更新日期:2000-01-01 00:00:00

  • Fully mobilizing host defense: building better vaccines.

    abstract::Developments in methods for identifying antigens from infectious agents and cancers has provided exciting new opportunities in prevention and treatment through vaccination. In many of these situations, however, traditional immunization techniques do not stimulate protective immunity because they fail to fully mobilize...

    journal_title:Nature biotechnology

    pub_type: 杂志文章,评审

    doi:10.1038/3469

    authors: Raychaudhuri S,Rock KL

    更新日期:1998-11-01 00:00:00

  • Preventing gene silencing with human replicators.

    abstract::Transcriptional silencing, one of the major impediments to gene therapy in humans, is often accompanied by replication during late S-phase. We report that transcriptional silencing and late replication were prevented by DNA sequences that can initiate DNA replication (replicators). When replicators were included in si...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1202

    authors: Fu H,Wang L,Lin CM,Singhania S,Bouhassira EE,Aladjem MI

    更新日期:2006-05-01 00:00:00

  • RNAi modulation of placental sFLT1 for the treatment of preeclampsia.

    abstract::Preeclampsia is a placentally induced hypertensive disorder of pregnancy that is associated with substantial morbidity and mortality to mothers and fetuses. Clinical manifestations of preterm preeclampsia result from excess circulating soluble vascular endothelial growth factor receptor FLT1 (sFLT1 or sVEGFR1) of plac...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.4297

    authors: Turanov AA,Lo A,Hassler MR,Makris A,Ashar-Patel A,Alterman JF,Coles AH,Haraszti RA,Roux L,Godinho BMDC,Echeverria D,Pears S,Iliopoulos J,Shanmugalingam R,Ogle R,Zsengeller ZK,Hennessy A,Karumanchi SA,Moore MJ,Khvoro

    更新日期:2018-11-19 00:00:00

  • Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease.

    abstract::RNA-guided genome editing with the CRISPR-Cas9 system has great potential for basic and clinical research, but the determinants of targeting specificity and the extent of off-target cleavage remain insufficiently understood. Using chromatin immunoprecipitation and high-throughput sequencing (ChIP-seq), we mapped genom...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.2916

    authors: Kuscu C,Arslan S,Singh R,Thorpe J,Adli M

    更新日期:2014-07-01 00:00:00

  • Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity.

    abstract::We present two algorithms to predict the activity of AsCpf1 guide RNAs. Indel frequencies for 15,000 target sequences were used in a deep-learning framework based on a convolutional neural network to train Seq-deepCpf1. We then incorporated chromatin accessibility information to create the better-performing DeepCpf1 a...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.4061

    authors: Kim HK,Min S,Song M,Jung S,Choi JW,Kim Y,Lee S,Yoon S,Kim HH

    更新日期:2018-03-01 00:00:00

  • Protein detection using proximity-dependent DNA ligation assays.

    abstract::The advent of in vitro DNA amplification has enabled rapid acquisition of genomic information. We present here an analogous technique for protein detection, in which the coordinated and proximal binding of a target protein by two DNA aptamers promotes ligation of oligonucleotides linked to each aptamer affinity probe....

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0502-473

    authors: Fredriksson S,Gullberg M,Jarvius J,Olsson C,Pietras K,Gústafsdóttir SM,Ostman A,Landegren U

    更新日期:2002-05-01 00:00:00

  • The chemical evolution of oligonucleotide therapies of clinical utility.

    abstract::After nearly 40 years of development, oligonucleotide therapeutics are nearing meaningful clinical productivity. One of the key advantages of oligonucleotide drugs is that their delivery and potency are derived primarily from the chemical structure of the oligonucleotide whereas their target is defined by the base seq...

    journal_title:Nature biotechnology

    pub_type: 杂志文章,评审

    doi:10.1038/nbt.3765

    authors: Khvorova A,Watts JK

    更新日期:2017-03-01 00:00:00

  • Transplantation of engineered organoids enables rapid generation of metastatic mouse models of colorectal cancer.

    abstract::Colorectal cancer (CRC) is a leading cause of death in the developed world, yet facile preclinical models that mimic the natural stages of CRC progression are lacking. Through the orthotopic engraftment of colon organoids we describe a broadly usable immunocompetent CRC model that recapitulates the entire adenoma-aden...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3837

    authors: O'Rourke KP,Loizou E,Livshits G,Schatoff EM,Baslan T,Manchado E,Simon J,Romesser PB,Leach B,Han T,Pauli C,Beltran H,Rubin MA,Dow LE,Lowe SW

    更新日期:2017-06-01 00:00:00

  • Cell penetrating PNA constructs regulate galanin receptor levels and modify pain transmission in vivo.

    abstract::Peptide nucleic acids (PNAs) form stable and tight complexes with complementary DNA and/or RNA and would be promising antisense reagents if their cellular delivery could be improved. We show that a 21-mer PNA, complementary to the human galanin receptor type 1 mRNA, coupled to the cellular transporter peptides, transp...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0998-857

    authors: Pooga M,Soomets U,Hällbrink M,Valkna A,Saar K,Rezaei K,Kahl U,Hao JX,Xu XJ,Wiesenfeld-Hallin Z,Hökfelt T,Bartfai T,Langel U

    更新日期:1998-09-01 00:00:00

  • DNA confidential.

    abstract::As the cost of human genome sequencing plunges and large-scale genome-phenotype studies become possible, society should do more to reward those individuals who choose to disclose their data, despite the risks. ...

    journal_title:Nature biotechnology

    pub_type: 评论,社论

    doi:10.1038/nbt0909-777

    authors:

    更新日期:2009-09-01 00:00:00

  • Toxin delivery by the coat protein of an aphid-vectored plant virus provides plant resistance to aphids.

    abstract::The sap-sucking insects (order Hemiptera), including aphids, planthoppers, whiteflies and stink bugs, present one of the greatest challenges for pest management in global agriculture. Insect neurotoxins offer an alternative to chemical insecticides for controlling these pests, but require delivery into the insect hemo...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.2753

    authors: Bonning BC,Pal N,Liu S,Wang Z,Sivakumar S,Dixon PM,King GF,Miller WA

    更新日期:2014-01-01 00:00:00

  • Engineering soluble proteins for structural genomics.

    abstract::Structural genomics has the ambitious goal of delivering three-dimensional structural information on a genome-wide scale. Yet only a small fraction of natural proteins are suitable for structure determination because of bottlenecks such as poor expression, aggregation, and misfolding of proteins, and difficulties in s...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt732

    authors: Pédelacq JD,Piltch E,Liong EC,Berendzen J,Kim CY,Rho BS,Park MS,Terwilliger TC,Waldo GS

    更新日期:2002-09-01 00:00:00

  • Peptidomimetic compounds that inhibit antigen presentation by autoimmune disease-associated class II major histocompatibility molecules.

    abstract::We have identified a heptapeptide with high affinity to rheumatoid arthritis-associated class II major histocompatibility (MHC) molecules. Using a model of its interaction with the class II binding site, a variety of mimetic substitutions were introduced into the peptide. Several unnatural amino acids and dipeptide mi...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/9865

    authors: Falcioni F,Ito K,Vidovic D,Belunis C,Campbell R,Berthel SJ,Bolin DR,Gillespie PB,Huby N,Olson GL,Sarabu R,Guenot J,Madison V,Hammer J,Sinigaglia F,Steinmetz M,Nagy ZA

    更新日期:1999-06-01 00:00:00