Interaction of anesthetics with the Rho GTPase regulator Rho GDP dissociation inhibitor.

Abstract:

:The physiological effects of anesthetics have been ascribed to their interaction with hydrophobic sites within functionally relevant CNS proteins. Studies have shown that volatile anesthetics compete for luciferin binding to the hydrophobic substrate binding site within firefly luciferase and inhibit its activity (Franks, N. P., and Lieb, W. R. (1984) Nature 310, 599-601). To assess whether anesthetics also compete for ligand binding to a mammalian signal transduction protein, we investigated the interaction of the volatile anesthetic, halothane, with the Rho GDP dissociation inhibitor (RhoGDIalpha), which binds the geranylgeranyl moiety of GDP-bound Rho GTPases. Consistent with the existence of a discrete halothane binding site, the intrinsic tryptophan fluorescence of RhoGDIalpha was quenched by halothane (2-bromo-2-chloro-1,1,1-trifluoroethane) in a saturable, concentration-dependent manner. Bromine quenching of tryptophan fluorescence is short-range and W192 and W194 of the RhoGDIalpha are located within the geranylgeranyl binding pocket, suggesting that halothane binds within this region. Supporting this, N-acetyl-geranylgeranyl cysteine reversed tryptophan quenching by halothane. Short chain n-alcohols ( n < 6) also reversed tryptophan quenching, suggesting that RhoGDIalpha may also bind n-alkanols. Consistent with this, E193 was photolabeled by 3-azibutanol. This residue is located in the vicinity of, but outside, the geranylgeranyl chain binding pocket, suggesting that the alcohol binding site is distinct from that occupied by halothane. Supporting this, N-acetyl-geranylgeranyl cysteine enhanced E193 photolabeling by 3-azibutanol. Overall, the results suggest that halothane binds to a site within the geranylgeranyl chain binding pocket of RhoGDIalpha, whereas alcohols bind to a distal site that interacts allosterically with this pocket.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Ho C,Shanmugasundararaj S,Miller KW,Malinowski SA,Cook AC,Slater SJ

doi

10.1021/bi800544d

subject

Has Abstract

pub_date

2008-09-09 00:00:00

pages

9540-52

issue

36

eissn

0006-2960

issn

1520-4995

journal_volume

47

pub_type

杂志文章
  • Cooperativity and oligomeric status of cardiac muscarinic cholinergic receptors.

    abstract::Muscarinic cholinergic receptors can appear to be more numerous when labeled by [(3)H]quinuclidinylbenzilate (QNB) than by N-[(3)H]methylscopolamine (NMS). The nature of the implied heterogeneity has been studied with M(2) receptors in detergent-solubilized extracts of porcine atria. The relative capacity for [(3)H]NM...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011746s

    authors: Park PS,Sum CS,Pawagi AB,Wells JW

    更新日期:2002-04-30 00:00:00

  • Inactivation of Met471Cys tyramine β-monooxygenase results from site-specific cysteic acid formation.

    abstract::Tyramine β-monooxygenase (TβM), the insect homologue of dopamine β-monooxygenase, is a neuroregulatory enzyme that catalyzes the β-hydroxylation of tyramine to yield octopamine. Mutation of the methionine (Met) ligand to Cu(M) of TβM, Met471Cys, yielded a form of TβM that is catalytically active but susceptible to ina...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300456f

    authors: Osborne RL,Zhu H,Iavarone AT,Hess CR,Klinman JP

    更新日期:2012-09-25 00:00:00

  • Coherent dynamics during the primary electron-transfer reaction in membrane-bound reaction centers of Rhodobacter sphaeroides.

    abstract::The temporal evolution of the near-infrared stimulated emission band of the special pair excited state (P*) in the reaction center of Rhodobacter sphaeroides has been studied in intracytoplasmic membranes of the antenna-deficient RCO1 mutant at 10 K with a resolution of 30 fs. On the 100-fs time scale the emission ban...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00188a002

    authors: Vos MH,Jones MR,Hunter CN,Breton J,Lambry JC,Martin JL

    更新日期:1994-06-07 00:00:00

  • Mutagenic events in Escherichia coli and mammalian cells generated in response to acetylaminofluorene-derived DNA adducts positioned in the Nar I restriction enzyme site.

    abstract::Comparative mutagenesis studies of N-(2'-deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) and N-(2'-deoxyguanosin-8-yl)-2-aminofluorene (dG-AF) adducts positioned in the Nar I restriction enzyme site were performed using Escherichia coli (E. coli) and simian kidney (COS-7) cells. Oligodeoxynucleotides ((5)(')TCCTCG(...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0202878

    authors: Tan X,Suzuki N,Grollman AP,Shibutani S

    更新日期:2002-12-03 00:00:00

  • Duplication of a Single Strand in a β-Sheet Can Produce a New Switching Function in a Photosensory Protein.

    abstract::Duplication of a single β-strand that forms part of a β-sheet in photoactive yellow protein (PYP) was found to produce two approximately isoenergetic protein conformations, in which either the first or the second copy of the duplicated β-strand participates in the β-sheet. Whereas one conformation (big-loop) is more s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00445

    authors: Kumar A,Nokhrin S,Woloschuk RM,Woolley GA

    更新日期:2018-07-17 00:00:00

  • Temperature-dependent CD and NMR studies on a synthetic oligonucleotide containing a B-Z junction at high salt.

    abstract::It is now accepted that two or more conformations may exist within the same DNA molecule, thereby generating conformational junctions. The presence of B-Z junctions between right- and left-handed DNA conformations has been detected in plasmids by a number of techniques. Preliminary characterization of the first exampl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00428a046

    authors: Sheardy RD,Winkle SA

    更新日期:1989-01-24 00:00:00

  • Thermal, chemical, and enzymatic stability of the cyclotide kalata B1: the importance of the cyclic cystine knot.

    abstract::The cyclotides constitute a recently discovered family of plant-derived peptides that have the unusual features of a head-to-tail cyclized backbone and a cystine knot core. These features are thought to contribute to their exceptional stability, as qualitatively observed during experiments aimed at sequencing and char...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049711q

    authors: Colgrave ML,Craik DJ

    更新日期:2004-05-25 00:00:00

  • Determination of the rate-limiting steps for malic enzyme by the use of isotope effects and other kinetic studies.

    abstract::Isotope effects have been measured with Mg2+ as the activator and L-malate labeled with deuterium or tritium at carbon 2 as the substrate over the pH range 4-10. Comparison of the nearly pH-independent deuterium-isotope effect on V/Kmalate of 1.5 with the tritium effect of 2.0 by the method of Northrop (Northrop, D.B....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00623a002

    authors: Schimerlik MI,Grimshaw CE,Cleland WW

    更新日期:1977-02-22 00:00:00

  • Structure of Toxoplasma gondii LDH1: active-site differences from human lactate dehydrogenases and the structural basis for efficient APAD+ use.

    abstract::While within a human host the opportunistic pathogen Toxoplasma gondii relies heavily on glycolysis for its energy needs. Lactate dehydrogenase (LDH), the terminal enzyme in anaerobic glycolysis necessary for NAD(+) regeneration, therefore represents an attractive therapeutic target. The tachyzoite stage lactate dehyd...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035108g

    authors: Kavanagh KL,Elling RA,Wilson DK

    更新日期:2004-02-03 00:00:00

  • Energy dependent hydrogen ion accumulation in submitochondrial particles.

    abstract::The fluorescence quenching of 9-aminoacridine (9AA) in suspension of beef heart EDTA submitochondrial particles was studied and was used to calculate the pH gradient between these particles and the medium. This pH gradient, which is energy dependent, is also dependent strongly on the presence of anion species in the m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00683a017

    authors: Rottenberg H,Lee CP

    更新日期:1975-06-17 00:00:00

  • Monofunctional chorismate mutase from Bacillus subtilis: kinetic and 13C NMR studies on the interactions of the enzyme with its ligands.

    abstract::The interaction of the monofunctional chorismate mutase from Bacillus subtilis with chorismate and prephenate has been studied kinetically and by NMR spectroscopy with 13C specifically labeled substrates. Prephenate dominates the population of enzyme-bound species, and the "off" rate constant (approximately 60 s-1) ob...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00489a051

    authors: Gray JV,Eren D,Knowles JR

    更新日期:1990-09-18 00:00:00

  • Purification of human S-adenosylmethionine decarboxylase expressed in Escherichia coli and use of this protein to investigate the mechanism of inhibition by the irreversible inhibitors, 5'-deoxy-5'-[(3-hydrazinopropyl)methylamino]adenosine and 5'-([(Z)-4-

    abstract::Human S-adenosylmethionine decarboxylase (AdoMetDC) was expressed in high yield in Escherichia coli using the pIN-III(lppP-5) expression vector and purified to apparent homogeneity using affinity chromatography on methylglyoxal bis(guanylhydrazone)-Sepharose. The inactivation of the purified enzyme by 5'-deoxy-5'-[(3-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00144a027

    authors: Shantz LM,Stanley BA,Secrist JA 3rd,Pegg AE

    更新日期:1992-07-28 00:00:00

  • Direct evidence for GTP and GDP-Pi intermediates in microtubule assembly.

    abstract::Identification of the kinetic intermediates in GTP hydrolysis on microtubules and characterization of their assembly properties is essential in understanding microtubule dynamics. By using an improved glass filter assay that selectively traps microtubules with a dead time of 2 s and monitoring taxol-induced rapid asse...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00490a007

    authors: Melki R,Carlier MF,Pantaloni D

    更新日期:1990-09-25 00:00:00

  • Production and characterization of monoclonal antibodies against the two subunits proteins B1 and B2 of Escherichia coli ribonucleotide reductase.

    abstract::Ribonucleotide reductase from Escherichia coli consists of two nonidentical subunits, named protein B1 (170 000) and protein B2 (87 000). We purified and characterized five monoclonal antibodies against B1 and three against B2 from hybridomas obtained by fusion of spleen cells from immunized mice and the myeloma cell ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00352a018

    authors: Anderson A,Barlow T,Pontis E,Reichard P

    更新日期:1986-02-25 00:00:00

  • Kinetic stability may determine the interaction dynamics of the bifunctional protein DCoH1, the dimerization cofactor of the transcription factor HNF-1α .

    abstract::The two disparate functions of DCoH1 (dimerization cofactor of HNF-1)/PCD (pterin-4a-carbinolamine dehydratase) are associated with a change in oligomeric state. DCoH dimers enhance the activity of the diabetes-associated transcription factor HNF-1α (hepatocyte nuclear factor-1α), while the PCD activity of DCoH1 homot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1015056

    authors: Rho H,Jones CN,Rose RB

    更新日期:2010-11-30 00:00:00

  • Inhibition of Tat-mediated transactivation of HIV-1 LTR transcription by polyamide nucleic acid targeted to TAR hairpin element.

    abstract::Tat, an essential human immunodeficiency virus type 1 protein interacts with the transactivation response element (TAR) and stimulates transcription from the viral long-terminal repeat (LTR). Blockage of Tat-TAR interaction halts viral transcription and hence replication. We have found that polyamide nucleic acid (PNA...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000708q

    authors: Mayhood T,Kaushik N,Pandey PK,Kashanchi F,Deng L,Pandey VN

    更新日期:2000-09-26 00:00:00

  • A peptide hairpin inhibitor of amyloid beta-protein oligomerization and fibrillogenesis.

    abstract::Amyloid beta-protein (Abeta) self-assembly is linked strongly to Alzheimer's disease. We found that PP-Leu, a tridecapeptide analogue of broad-spectrum antiviral peptides termed theta-defensins, potently inhibits Abeta oligomer and fibril formation. This effect appeared to be mediated through sequestration of the amyl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901325g

    authors: Yamin G,Ruchala P,Teplow DB

    更新日期:2009-12-08 00:00:00

  • Aspartate receptors of Escherichia coli and Salmonella typhimurium bind ligand with negative and half-of-the-sites cooperativity.

    abstract::The aspartate receptors of Escherichia coli and Salmonella typhimurium which mediate chemotactic responsiveness to aspartate have 79% amino acid sequence identity but exhibited apparently quite different aspartate binding plots. The Scatchard plot of the Salmonella receptor was concave upward whereas the E. coli recep...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00169a002

    authors: Biemann HP,Koshland DE Jr

    更新日期:1994-01-25 00:00:00

  • Topographical localization of peroxisomal acyl-CoA ligases: differential localization of palmitoyl-CoA and lignoceroyl-CoA ligases.

    abstract::We found that peroxisomal lignoceroyl-CoA ligase, like palmitoyl-CoA ligase, is present in the peroxisomal membrane whereas the peroxisomal beta-oxidation enzyme system is localized in the matrix. To further define the role of peroxisomal acyl-CoA ligases (membrane component) in providing acyl-CoA for peroxisomal beta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00468a027

    authors: Lazo O,Contreras M,Singh I

    更新日期:1990-04-24 00:00:00

  • Initiation, elongation, and processivity of carboxyl-terminal mutants of T7 RNA polymerase.

    abstract::Bacteriophage T7 RNA polymerase is a single-subunit enzyme which has a C-terminal amino acid sequence of Phe-Ala-Phe-Ala883 (FAFA883). Closely related hydrophobic sequences are present at the C termini of seven other single-subunit RNA polymerases, including the mitochondrial RNA polymerase. Mutations at any of the fo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962397i

    authors: Gardner LP,Mookhtiar KA,Coleman JE

    更新日期:1997-03-11 00:00:00

  • Conformational Closure of the Catalytic Site of Human CD38 Induced by Calcium.

    abstract::First identified on the surface of lymphoids as a type II transmembrane protein, CD38 has now been established to have dual functions not only as a receptor but also as a multifunctional enzyme,catalyzing the synthesis of and hydrolysis of a general calcium messenger molecule, cyclic ADP-ribose(cADPR). The receptorial...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:

    authors: Liu Q,Graeff R,Kriksunov IA,Lam CM,Lee HC,Hao Q

    更新日期:2008-12-30 00:00:00

  • Nanosecond fluorescence studies of noncovalent interaction of monomeric and dimeric intercalators with DNA.

    abstract::The noncovalent interaction of 2-aminodipyrido[1,2-a:3',2'-d]imidazole (Glu-P-2) and its derivatives, which are potent mutagens isolated from L-glutamic acid pyrolysate, with calf thymus DNA was studied by steady-state and nanosecond fluorescence spectroscopies. The fluorescence of these compounds exhibits static quen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00344a013

    authors: Itoh M,Kurokawa H,Usui M,Ohno M,Shimoda E,Hashimoto Y,Shudo K

    更新日期:1985-11-05 00:00:00

  • Further characterization of the subunits of the receptor with high affinity for immunoglobulin E.

    abstract::The alpha, beta, and gamma subunits of the receptor with high affinity for immunoglobulin E were isolated and their compositions assessed by direct amino acid analysis and by incorporation of radioactive precursors. The compositions show no unusual features other than a rather high content of tryptophan in the alpha c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00383a024

    authors: Alcaraz G,Kinet JP,Liu TY,Metzger H

    更新日期:1987-05-05 00:00:00

  • Horse Liver Alcohol Dehydrogenase: Zinc Coordination and Catalysis.

    abstract::During catalysis by liver alcohol dehydrogenase (ADH), a water bound to the catalytic zinc is replaced by the oxygen of the substrates. The mechanism might involve a pentacoordinated zinc or a double-displacement reaction with participation by a nearby glutamate residue, as suggested by studies of human ADH3, yeast AD...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00446

    authors: Plapp BV,Savarimuthu BR,Ferraro DJ,Rubach JK,Brown EN,Ramaswamy S

    更新日期:2017-07-18 00:00:00

  • Complement component C2, inhibiting a latent serine protease in the classical pathway of complement activation.

    abstract::The innate immune response to infection or injury involves an antigen-antibody triggered classical pathway (CP) of complement activation, in which soluble and cell surface plasma proteins cooperatively effect elimination of foreign organisms and damaged host cells. However, protracted or dysfunctional complement activ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900679r

    authors: Halili MA,Ruiz-Gómez G,Le GT,Abbenante G,Fairlie DP

    更新日期:2009-09-08 00:00:00

  • Portability of epimerization domain and role of peptidyl carrier protein on epimerization activity in nonribosomal peptide synthetases.

    abstract::Incorporation of nonproteinogenic amino acids in small polypeptides synthesized by nonribosomal peptide synthetases (NRPS) significantly contributes to their biological activity. In these peptides, conversion of L-amino acids to the corresponding D-isomer is catalyzed by specialized NRPS modules that utilize an epimer...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011595t

    authors: Linne U,Doekel S,Marahiel MA

    更新日期:2001-12-25 00:00:00

  • The acidic phosphoproteins from Saccharomyces cerevisiae ribosomes. NH2-terminal acetylation is a conserved difference between P1 and P2 proteins.

    abstract::Isoelectrofocusing gels of acidic ribosomal proteins from most yeast strains reveal the presence of up to 10 bands which are the product of only 4 genes. The proteins have been characterized by NH2-terminal amino acid sequencing, specific antibodies, HPLC, and by taking advantage of acidic protein-defective yeast stra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00067a010

    authors: Santos C,Ortiz-Reyes B,Naranda T,Remacha M,Ballesta JP

    更新日期:1993-04-27 00:00:00

  • Glutaminyl cyclases display significant catalytic proficiency for glutamyl substrates.

    abstract::N-Terminal glutaminyl and glutamyl residues of peptides and proteins tend to form pyroglutamic acid (pGlu) by intramolecular cylization. The rate constants for spontaneous cyclization of glutamine (10(-6) s(-1)) and glutamic acid (10(-9) s(-1)) in aqueous solution differ by approximately 3 orders of magnitude at pH 6....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9018835

    authors: Seifert F,Schulz K,Koch B,Manhart S,Demuth HU,Schilling S

    更新日期:2009-12-22 00:00:00

  • Interaction of mant-adenosine nucleotides and magnesium with kinesin.

    abstract::Displacement of the fluorescent substrate analogue methylanthraniloyl ADP (mant-ADP) from kinesin by excess ATP results in a biphasic fluorescent transient. The pH and microtubule dependence of the rates and amplitudes indicates that the two phases are produced by release of bound mant-ADP, with an excess of the 3'-is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972742j

    authors: Cheng JQ,Jiang W,Hackney DD

    更新日期:1998-04-14 00:00:00

  • Diclofenac and its derivatives as tools for studying human cytochromes P450 active sites: particular efficiency and regioselectivity of P450 2Cs.

    abstract::A comparison of the oxidations of diclofenac with microsomes of yeasts expressing various human liver cytochromes P450 showed that P450 2C9 regioselectively led to 4'-hydroxy diclofenac (4'-OHD) whereas P450 3A4 only led to 5-hydroxy diclofenac (5-OHD). P450 2C19, 2C18, and 2C8 led to the simultaneous formation of 4'-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991195u

    authors: Mancy A,Antignac M,Minoletti C,Dijols S,Mouries V,Duong NT,Battioni P,Dansette PM,Mansuy D

    更新日期:1999-10-26 00:00:00