The acidic phosphoproteins from Saccharomyces cerevisiae ribosomes. NH2-terminal acetylation is a conserved difference between P1 and P2 proteins.

Abstract:

:Isoelectrofocusing gels of acidic ribosomal proteins from most yeast strains reveal the presence of up to 10 bands which are the product of only 4 genes. The proteins have been characterized by NH2-terminal amino acid sequencing, specific antibodies, HPLC, and by taking advantage of acidic protein-defective yeast strains obtained by gene disruption methods. The four most basic proteins coincide with the phosphorylated and dephosphorylated forms of the YP2 proteins, YP2 alpha and YP2 beta, formerly named L44 and L45. Amino-terminal sequencing has shown that these two polypeptides have free amino-terminal ends starting at the first methionine residue. The bands defined earlier as L44' correspond to the phosphorylated and dephosphorylated processed forms of protein YB1 beta lacking the first eight amino acids. The formation of this truncated YP1 beta form seems to be stimulated by salt during protein extraction and is also favored by some modifications at the amino termini of the protein. On the other hand, the previously uncharacterized band, called Ax, corresponds to an NH2-terminal acetylated form of YP1 beta which starts at the serine in the second position of the nucleotide-derived sequence. Finally, the most acidic band is the phosphorylated product of the fourth acidic protein gene. This protein, called YP1 alpha, which is very poorly stained by silver and Coomassie blue, has not been characterized in detail previously. It is also monophosphorylated in the ribosome and, like YP1 beta, is present as an NH2-terminal acetylated form starting at the second serine residue.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Santos C,Ortiz-Reyes B,Naranda T,Remacha M,Ballesta JP

doi

10.1021/bi00067a010

subject

Has Abstract

pub_date

1993-04-27 00:00:00

pages

4231-6

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

32

pub_type

杂志文章
  • Dynamics of light-induced conformational changes of the phoborhodopsin/transducer complex formed in the n-dodecyl beta-D-maltoside micelle.

    abstract::A complex of photoreceptor phoborhodopsin (ppR; also called sensory rhodopsin II) and its cognate halobacterial transducer II (pHtrII) existing in the plasma membrane mediates the light signal to the cytoplasm in the earliest step of negative phototaxis in Natronomonas pharaonis. We have investigated the dynamics of t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602482s

    authors: Taniguchi Y,Ikehara T,Kamo N,Yamasaki H,Toyoshima Y

    更新日期:2007-05-08 00:00:00

  • Magnetic circular dichroism properties of reaction center complexes isolated from the zinc-bacteriochlorophyll a-containing purple bacterium Acidiphilium rubrum.

    abstract::Reaction center (RC) complexes isolated from a Zn-bacteriochlorophyll (BChl) a-containing purple bacterium, Acidiphilium rubrum, were characterized by absorption, circular dichroism, and magnetic circular dichroism (MCD) spectroscopy. The oxidized-minus-reduced difference spectra indicated that, in this RC, the Zn-BCh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991444e

    authors: Mimuro M,Kobayashi M,Shimada K,Uezono K,Nozawa T

    更新日期:2000-04-11 00:00:00

  • A "Seleno Effect" Differentiates the Roles of Redox Active Cysteine Residues in Plasmodium falciparum Thioredoxin Reductase.

    abstract::Here, we introduce the concept of the "seleno effect" in the study of oxidoreductases that catalyze thiol/disulfide exchange reactions. In these reactions, selenium can replace sulfur as a nucleophile, electrophile, or leaving group, and the resulting change in rate (the seleno effect) is defined as kS/ kSe. In soluti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00004

    authors: O'Keefe JP,Dustin CM,Barber D,Snider GW,Hondal RJ

    更新日期:2018-03-20 00:00:00

  • Photoinduced reactivity of the HIV-1 envelope glycoprotein with a membrane-embedded probe reveals insertion of portions of the HIV-1 Gp41 cytoplasmic tail into the viral membrane.

    abstract::The interactions of HIV-1 Env (gp120-gp41) with CD4 and coreceptors trigger a barrage of conformational changes in Env that drive the membrane fusion process. Various regions of gp41 have profound effects on HIV entry and budding. However, the precise interactions between gp41 and the membrane have not been elucidated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701920f

    authors: Viard M,Ablan SD,Zhou M,Veenstra TD,Freed EO,Raviv Y,Blumenthal R

    更新日期:2008-02-19 00:00:00

  • Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2'-hydroxyl effects.

    abstract::Recent studies have shown that there can be large differences in the stability of double and triple helical nucleic acid complexes, depending on whether RNA or DNA strands are involved. These differences have been attributed to structural differences in the sugar-phosphate backbone of these two polymers. However, sinc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00012a031

    authors: Wang S,Kool ET

    更新日期:1995-03-28 00:00:00

  • Redox properties of electron-transfer flavoprotein ubiquinone oxidoreductase as determined by EPR-spectroelectrochemistry.

    abstract::We have determined the formal potential values for each electron transfer to electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO), in order to further characterize the thermodynamics of electron transport from various acyl-CoA thioesters to the mitochondrial ubiquinone pool. ETF-QO contains one [4Fe-4S]2+...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00162a012

    authors: Paulsen KE,Orville AM,Frerman FE,Lipscomb JD,Stankovich MT

    更新日期:1992-12-01 00:00:00

  • Crystal structure analysis of a mutant Escherichia coli thioredoxin in which lysine 36 is replaced by glutamic acid.

    abstract::The structure of a mutant Escherichia coli thioredoxin with a glutamic acid substituted for a conserved lysine at position 36 adjacent to the active site has been solved using molecular replacement and refined at 2.0-A resolution to a crystallographic residual of 19.9%. The mutant was crystallized in an orthorhombic s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00070a017

    authors: Nikkola M,Gleason FK,Fuchs JA,Eklund H

    更新日期:1993-05-18 00:00:00

  • Interaction of a paramagnetic analogue of oxaloacetate with citrate synthase.

    abstract::Electron paramagnetic resonance studies have indicated that nitrosodisulfonate binds to pig heart citrate synthase. Titration of the enzyme with nitrosodisulfonate revealed several binding sites for the probe per subunit with one site (KD approximately 0.1 mM) having a greater affinity than the others. The substrate, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00584a028

    authors: Weidman SW,Drysdale GR

    更新日期:1979-08-21 00:00:00

  • Ionophoric activity of pluronic block copolymers.

    abstract::Pluronic block copolymers (triblock copolymers of poly(ethylene oxide) and poly(propylene oxide)) exhibit a chemosensitizing effect on multidrug resistant cell lines. Changes in membrane permeability are hypothesized to be responsible because inhibition of drug transport mediated by both the multidrug-resistance-assoc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035768l

    authors: Krylova OO,Pohl P

    更新日期:2004-03-30 00:00:00

  • HIV-1 membrane fusion mechanism: structural studies of the interactions between biologically-active peptides from gp41.

    abstract::Two synthetic peptides corresponding to sequences in HIV-1LAI gp41, (aa558-595) and T20 (aa 643-678), are strong inhibitors of HIV-1 viral fusion, having EC50 values of 1 microgram/mL and 1 ng/mL, respectively. Previous work suggested that T21 forms a coiled-coil structure in PBS solution, while T20 is primarily nonhe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9606962

    authors: Lawless MK,Barney S,Guthrie KI,Bucy TB,Petteway SR Jr,Merutka G

    更新日期:1996-10-22 00:00:00

  • Insights into the mechanism of flavoprotein-catalyzed amine oxidation from nitrogen isotope effects on the reaction of N-methyltryptophan oxidase.

    abstract::The mechanism of N-methyltryptophan oxidase, a flavin-dependent amine oxidase from Escherichia coli, was studied using a combination of kinetic isotope effects and theoretical calculations. The 15(kcat/Km) kinetic isotope effect for sarcosine oxidation is pH-dependent with a limiting value of 0.994-0.995 at high pH. D...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700482h

    authors: Ralph EC,Hirschi JS,Anderson MA,Cleland WW,Singleton DA,Fitzpatrick PF

    更新日期:2007-06-26 00:00:00

  • Structural and functional analysis of the NLRP4 pyrin domain.

    abstract::NLRP4 is a member of the nucleotide-binding and leucine-rich repeat receptor (NLR) family of cytosolic receptors and a member of an inflammation signaling cascade. Here, we present the crystal structure of the NLRP4 pyrin domain (PYD) at 2.3 Å resolution. The NLRP4 PYD is a member of the death domain (DD) superfamily ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3007059

    authors: Eibl C,Grigoriu S,Hessenberger M,Wenger J,Puehringer S,Pinheiro AS,Wagner RN,Proell M,Reed JC,Page R,Diederichs K,Peti W

    更新日期:2012-09-18 00:00:00

  • Limited proteolysis and biophysical characterization of the lipovitellin homology region in apolipoprotein B.

    abstract::Apolipoprotein B (apoB) is the essential nonexchangeable protein in chylomicrons and very low-density lipoprotein-derived lipoprotein particles, including low-density lipoprotein (LDL). ApoB has been a key target for cardiovascular research because of its essential role in the assembly, secretion, delivery, and recept...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048286y

    authors: Jiang ZG,Carraway M,McKnight CJ

    更新日期:2005-02-01 00:00:00

  • H-Ras peptide and protein substrates bind protein farnesyltransferase as an ionized thiolate.

    abstract::The zinc metalloenzyme protein farnesyltransferase (FTase) catalyzes the alkylation of a cysteine residue of protein substrates with a 15 carbon farnesyl group. We have developed fluorescence assays to directly measure the affinity of the enzyme for peptide and protein (Ras) substrates. A peptide corresponding to the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981525v

    authors: Hightower KE,Huang CC,Casey PJ,Fierke CA

    更新日期:1998-11-03 00:00:00

  • Bidirectional Transformation of a Metamorphic Protein between the Water-Soluble and Transmembrane Native States.

    abstract::The bidirectional transformation of a protein between its native water-soluble and integral transmembrane conformations is demonstrated for FraC, a hemolytic protein of the family of pore-forming toxins. In the presence of biological membranes, the water-soluble conformation of FraC undergoes a remarkable structural r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01112

    authors: Tanaka K,Caaveiro JM,Tsumoto K

    更新日期:2015-11-24 00:00:00

  • Elucidation of the functional metal binding profile of a Cd(II)/Pb(II) sensor CmtR(Sc) from Streptomyces coelicolor.

    abstract::Metal homeostasis and resistance in bacteria is maintained by a panel of metal-sensing transcriptional regulators that collectively control transition metal availability and mediate resistance to heavy metal xenobiotics, including As(III), Cd(II), Pb(II), and Hg(II). The ArsR family constitutes a superfamily of metal ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100490u

    authors: Wang Y,Kendall J,Cavet JS,Giedroc DP

    更新日期:2010-08-10 00:00:00

  • Ultraviolet damage and nucleosome folding of the 5S ribosomal RNA gene.

    abstract::The Xenopus borealis somatic 5S ribosomal RNA gene was used as a model system to determine the mutual effects of nucleosome folding and formation of ultraviolet (UV) photoproducts (primarily cis-syn cyclobutane pyrimidine dimers, or CPDs) in chromatin. We analyzed the preferred rotational and translational settings of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991771m

    authors: Liu X,Mann DB,Suquet C,Springer DL,Smerdon MJ

    更新日期:2000-01-25 00:00:00

  • Chromatin assembly factor 1 interacts with histone H3 methylated at lysine 79 in the processes of epigenetic silencing and DNA repair.

    abstract::In eukaryotic cells, chromatin is classified into euchromatin, which is active in transcription, and heterochromatin that silences transcription. Histones in these two domains contain distinct modifications. Chromatin assembly factor 1 (CAF-1) is a highly conserved protein that functions in DNA replication, DNA repair...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0521083

    authors: Zhou H,Madden BJ,Muddiman DC,Zhang Z

    更新日期:2006-03-07 00:00:00

  • Inhibitors bound to Ca(2+)-free sarcoplasmic reticulum Ca(2+)-ATPase lock its transmembrane region but not necessarily its cytosolic region, revealing the flexibility of the loops connecting transmembrane and cytosolic domains.

    abstract::Ca2+-free crystals of sarcoplasmic reticulum Ca2+-ATPase have, up until now, been obtained in the presence of inhibitors such as thapsigargin (TG), bound to the transmembrane region of this protein. Here, we examined the consequences of such binding for the protein. We found that, after TG binding, an active site liga...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701855r

    authors: Montigny C,Picard M,Lenoir G,Gauron C,Toyoshima C,Champeil P

    更新日期:2007-12-25 00:00:00

  • Investigation into the catalytic role for the tryptophan residues within domain III of Pseudomonas aeruginosa exotoxin A.

    abstract::The role of the tryptophan residues in the substrate-binding and catalytic mechanism of an enzymatically active C-terminal fragment of Pseudomonas aeruginosa exotoxin A was studied by individually or jointly replacing these residues with phenylalanine. Substitution of W-466 decreased the ADP-ribosyltransferase and NAD...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961985t

    authors: Beattie BK,Prentice GA,Merrill AR

    更新日期:1996-12-03 00:00:00

  • DNAzyme-mediated silencing of ornithine decarboxylase.

    abstract::The value of reducing the activity of ornithine decarboxylase (ODC), a key enzyme in the biosynthesis of polyamines, is well-appreciated. Polyamines are necessary components for cell growth, and manipulation of polyamine homeostasis may be an effective strategy for the treatment of a number of disorders, including neo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047918d

    authors: Ackermann JM,Kanugula S,Pegg AE

    更新日期:2005-02-15 00:00:00

  • 51V NMR study of vanadate binding to myosin and its subfragment 1.

    abstract::The binding of various forms of vanadate to myosin and myosin subfragment 1 (S-1) was studied by 51V NMR at increasing vanadate concentrations between 0.06 and 1.0 mM. The distribution of the various forms of vanadate in the solution depended on the total concentration of vanadate. At low concentrations, the predomina...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00490a029

    authors: Ringel I,Peyser YM,Muhlrad A

    更新日期:1990-09-25 00:00:00

  • Affinity labeling of aminoacyl-tRNA synthetases with adenosine triphosphopyridoxal: probing the Lys-Met-Ser-Lys-Ser signature sequence as the ATP-binding site in Escherichia coli methionyl-and valyl-tRNA synthetases.

    abstract::Pyridoxal 5'-triphospho-5'-adenosine (AP3-PL), the affinity labeling reagent specific for lysine residues in the nucleotide-binding site of several enzymes [Tagaya, M., & Fukui, T. (1986) Biochemistry 25, 2958-2964; Yagami, T., Tagaya, M., & Fukui, T. (1988) FEBS Lett. 229, 261-264], was used to identify the ATP-bindi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00503a016

    authors: Hountondji C,Schmitter JM,Fukui T,Tagaya M,Blanquet S

    更新日期:1990-12-25 00:00:00

  • Engineering of papain: selective alteration of substrate specificity by site-directed mutagenesis.

    abstract::The S2 subsite specificity of the plant protease papain has been altered to resemble that of mammalian cathepsin B by site-directed mutagenesis. On the basis of amino acid sequence alignments for papain and cathepsin B, a double mutant (Val133Ala/Ser205Glu) was produced where Val133 and Ser205 are replaced by Ala and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00101a003

    authors: Khouri HE,Vernet T,Ménard R,Parlati F,Laflamme P,Tessier DC,Gour-Salin B,Thomas DY,Storer AC

    更新日期:1991-09-17 00:00:00

  • Demonstration by ultraviolet resonance Raman spectroscopy of differences in DNA organization and interactions in filamentous viruses Pf1 and fd.

    abstract::Pf1, a class II filamentous virus, has been investigated by ultraviolet resonance Raman (UVRR) spectroscopy with excitation wavelengths of 257, 244, 238, and 229 nm. The 257-nm UVRR spectrum is rich in Raman bands of the packaged single-stranded DNA (ssDNA) genome, despite the low DNA mass (6%) of the virion. Converse...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981965m

    authors: Wen ZQ,Armstrong A,Thomas GJ Jr

    更新日期:1999-03-09 00:00:00

  • Structure-Based Identification of Inhibitors for the SLC13 Family of Na(+)/Dicarboxylate Cotransporters.

    abstract::In mammals, citric acid cycle intermediates play a key role in regulating various metabolic processes, such as fatty acid synthesis and glycolysis. Members of the sodium-dependent SLC13 transporter family mediate the transport of di- and tricarboxylates into cells. SLC13 family members have been implicated in lifespan...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00388

    authors: Colas C,Pajor AM,Schlessinger A

    更新日期:2015-08-11 00:00:00

  • Hypochlorous acid reacts with the N-terminal methionines of proteins to give dehydromethionine, a potential biomarker for neutrophil-induced oxidative stress.

    abstract::Electrophilic halogenating agents, including hypohalous acids and haloamines, oxidize free methionine and the N-terminal methionines of peptides and proteins (e.g., Met-1 of anti-inflammatory peptide 1 and ubiquitin) to produce dehydromethionine (a five-membered isothiazolidinium heterocycle). Amide derivatives of met...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901343d

    authors: Beal JL,Foster SB,Ashby MT

    更新日期:2009-11-24 00:00:00

  • Assembly of dimeric variants of coumermycins by tandem action of the four biosynthetic enzymes CouL, CouM, CouP, and NovN.

    abstract::Coumermycin A(1) is a member of the aminocoumarin family of antibiotics. Unlike its structural relatives, novobiocin and clorobiocin, coumermycin A(1) is a dimer built on a 3-methyl-2,4-dicarboxypyrrole scaffold and bears two decorated noviose sugar components which are the putative target binding motifs for DNA gyras...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048457z

    authors: Freel Meyers CL,Oberthür M,Heide L,Kahne D,Walsh CT

    更新日期:2004-11-30 00:00:00

  • Truncation of the amino terminus of human apolipoprotein A-I substantially alters only the lipid-free conformation.

    abstract::An amino-terminal deletion mutant (residues 1-43) of human apolipoprotein A-I (apo hA-I) has been produced from a bacterial expression system to explore the structural and functional role of these amino acids, encoded by exon 3, in apo hA-I. Lipid binding of apo delta (1-43)A-I and lipid binding of apo hA-I are very s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961876e

    authors: Rogers DP,Brouillette CG,Engler JA,Tendian SW,Roberts L,Mishra VK,Anantharamaiah GM,Lund-Katz S,Phillips MC,Ray MJ

    更新日期:1997-01-14 00:00:00

  • Conformational states of N-acylalanine dithio esters: correlation of resonance Raman spectra with structures.

    abstract::The conformational states of N-acylalanine dithio esters, involving rotational isomers about the RC(=O)NH--CH(CH3) and NHCH(CH3)--C(=S) bonds, are defined and compared to those of N-acylglycine dithio esters. The structure of N-(p-nitrobenzoyl)-DL-alanine ethyl dithio ester has been determined by X-ray crystallographi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00401a038

    authors: Lee H,Angus RH,Storer AC,Varughese KI,Carey PR

    更新日期:1988-01-12 00:00:00