Abstract:
:The mechanism of N-methyltryptophan oxidase, a flavin-dependent amine oxidase from Escherichia coli, was studied using a combination of kinetic isotope effects and theoretical calculations. The 15(kcat/Km) kinetic isotope effect for sarcosine oxidation is pH-dependent with a limiting value of 0.994-0.995 at high pH. Density functional theory calculations on model systems were used to interpret these isotope effects. The isotope effects are inconsistent with proposed mechanisms involving covalent amine-flavin adducts but cannot by themselves conclusively distinguish between some discrete electron-transfer mechanisms and a direct hydride-transfer mechanism, although the latter mechanism is more consistent with the energetics of the reaction.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Ralph EC,Hirschi JS,Anderson MA,Cleland WW,Singleton DA,Fitzpatrick PFdoi
10.1021/bi700482hsubject
Has Abstractpub_date
2007-06-26 00:00:00pages
7655-64issue
25eissn
0006-2960issn
1520-4995journal_volume
46pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::Copper binding to the human copper chaperone for superoxide dismutase (hCCS) has been investigated by X-ray absorption spectroscopy. Stoichiometry measurements on the dialyzed, as-isolated protein indicated that up to 3.5 Cu ions bound per hCCS molecule. Reduction with either sodium dithionite or dithiothreitol decrea...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi000690j
更新日期:2000-06-27 00:00:00
abstract::Glutaraldehyde treatment of electroplax membrane preparations of Na,K-ATPase leads to irreversible changes in the enzymic behavior of the protein, which are not due to modification of the active site. When the glutaraldehyde treatment is carried out in a medium containing K+ and without Na+, the "K+-modified enzyme" s...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00288a016
更新日期:1983-09-13 00:00:00
abstract::SufS is a type II cysteine desulfurase and acts as the initial step in the Suf Fe-S cluster assembly pathway. In Escherichia coli, this pathway is utilized under conditions of oxidative stress and is resistant to reactive oxygen species. Mechanistically, this means SufS must shift between protecting a covalent persulf...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.8b01122
更新日期:2019-02-12 00:00:00
abstract::The partition of cis-parinaric acid (9,11,13,15-cis, trans, trans,cis-octadecatetraenoic acid, cis-PnA) and trans-parinaric acid (9,11,13,15-all-trans-octadecatetraenoic acid, trans-PnA) among aqueous, solid lipid, and fluid lipid phases has been measured by three spectroscopic parameters: absorption spectral shifts, ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00576a012
更新日期:1979-05-01 00:00:00
abstract::Homodinuclear (Pt,Pt) and heterodinuclear (Ru,Pt) metal compounds having the generalized formula M(a)NH2(CH)4NH2M(b) are shown to form specific DNA lesions which can efficiently cross-link proteins to DNA. In this study, the homodinuclear case is represented by M(a) = M(b) = [cis-Pt(Cl2)-(NH3)] and the heterodinuclear...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00095a007
更新日期:1993-11-09 00:00:00
abstract::CD23/Fc epsilonRII, the low-affinity receptor for IgE, is a multifunctional protein of importance in blood cell development and the immune system. We have studied the interaction of CD23 with IgE in solution using hydrodynamic methods applied to recombinant fragments of both ligands: sCD23, corresponding to the solubl...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi961231e
更新日期:1997-02-25 00:00:00
abstract::A series of 24-homologated 1,25-dihydroxyvitamin D3 compounds have been chemically synthesized and studied with regard to their activity in inducing differentiation of human promyelocyte HL-60 cells to monocytes and in calcium mobilizing activity in vitamin D deficient rats. Homologation of 1,25-dihydroxyvitamin D3 or...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00453a026
更新日期:1990-01-09 00:00:00
abstract::The human intestinal Caco-2 cell line, described as enterocyte-like in a number of studies, was examined for its ability to carry out the metabolism of vitamin A normally required in the absorptive process. Caco-2 cells contained cellular retinol-binding protein II, a protein which is abundant in human villus-associat...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00502a015
更新日期:1990-12-18 00:00:00
abstract::Enzyme-substrate contacts in the hydrolysis of ester substrates by the cysteine protease papain were investigated by systematically altering backbone hydrogen-bonding and side-chain hydrophobic contacts in the substrate and determining each substrate's kinetic constants. The observed specificity energies [defined as d...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00219a033
更新日期:1991-02-05 00:00:00
abstract::The photosynthetic antenna of Chloroflexus aurantiacus includes bacteriochlorophyll (BChl) C740 and BChl a792, both of which occur in chlorosomes, and B808-866 (containing BChl a808 and BChl a866), which is membrane-located (subscripts refer to near-infrared absorption maxima in vivo). BChl a792 is thought to mediate ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00400a024
更新日期:1987-12-29 00:00:00
abstract::Regulation of Saccharomyces cerevisiae membrane-associated phosphatidate phosphatase (3-sn-phosphatidate phosphohydrolase, EC 3.1.3.4) activity by phospholipids was examined using purified enzyme and Triton X-100/phospholipid-mixed micelles. Anionic phospholipids activated phosphatidate phosphatase activity whereas zw...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi952808f
更新日期:1996-03-26 00:00:00
abstract::The ovalbumin (Ov) gene contains a number of regulatory elements that control its transcriptional activity and restrict expression to avian oviduct. One major regulatory region, the steroid-dependent regulatory element (SDRE), is required for induction by estrogen and corticosterone. Another region, the negative regul...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0005862
更新日期:2000-07-25 00:00:00
abstract::alpha-Conotoxin GI is a snail toxin protein consisting of 13 amino acids cross-linked by 2 intramolecular disulfide bridges. This toxin is an antagonist of acetylcholine receptors. The native sequence has been synthesized, along with nine additional variants in which non-cysteine residues are replaced by alanine or th...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00111a021
更新日期:1991-11-26 00:00:00
abstract::The structure of empty capsids of Kilham rat virus, an autonomous parvovirus with icosahedral symmetry, was investigated by small-angle neutron scattering. From the forward scatter, the molecular weight was determined to be 4.0 X 10(6), and from the Guinier region, the radius of gyration was found to be 105 A in D2O a...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00321a044
更新日期:1984-12-18 00:00:00
abstract::The interaction of heparan sulfate with different ligand proteins depends on the precise location of O-sulfate groups in the polysaccharide chain. We have previously shown that overexpression in human kidney 293 cells of a mouse mastocytoma 2-O-sulfotransferase (2-OST), previously thought to catalyze the transfer of s...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi002926p
更新日期:2001-05-08 00:00:00
abstract::Anthrax toxin receptor 1 (ANTXR1)/tumor endothelial marker 8 (TEM8) is one of two known proteinaceous cell surface anthrax toxin receptors. A metal ion dependent adhesion site (MIDAS) present in the integrin-like inserted (I) domain of ANTXR1 mediates the binding of the anthrax toxin subunit, protective antigen (PA). ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi100887w
更新日期:2010-08-31 00:00:00
abstract::It has been suggested that the down-regulation of hepatic HMG-CoA reductase by dietary cholesterol requires modification of the cholesterol molecule before it can exert its suppressive action. In a recent study [Lund, E., Breuer, O., & Björkhem, I. (1992) J. Biol. Chem. 267, 25092-25097], we showed that side-chain hyd...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00167a038
更新日期:1994-01-11 00:00:00
abstract::The S2 subsite specificity of the plant protease papain has been altered to resemble that of mammalian cathepsin B by site-directed mutagenesis. On the basis of amino acid sequence alignments for papain and cathepsin B, a double mutant (Val133Ala/Ser205Glu) was produced where Val133 and Ser205 are replaced by Ala and ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00101a003
更新日期:1991-09-17 00:00:00
abstract::The technique of quasi-elastic light scattering was used to measure the translational diffusion coefficient, D, of purified human prothrombin in buffered aqueous solutions and to monitor for the first time the fragmentation of this protein as it is converted to thrombin. The values of D20,w, measured at two different ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00628a016
更新日期:1977-05-03 00:00:00
abstract::The local and global dynamics of the chemokine receptor CXCR1 are characterized using a combination of solution NMR and solid-state NMR experiments. In isotropic bicelles (q = 0.1), only 13% of the expected number of backbone amide resonances is observed in (1)H/(15)N HSQC solution NMR spectra of uniformly (15)N-label...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi101568j
更新日期:2011-03-29 00:00:00
abstract::Although plasma membrane domains, such as caveolae, provide an organizing principle for signaling pathways and cholesterol homeostasis in the cell, relatively little is known regarding specific mechanisms, whereby intracellular lipid-binding proteins are targeted to caveolae. Therefore, the interaction between caveoli...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi7002636
更新日期:2007-07-17 00:00:00
abstract::Escherichia coli helicase II (UvrD) protein can initiate unwinding of duplex DNA at blunt ends or nicks, although these reactions require excess protein. We have undertaken kinetic studies of these reactions in order to probe the mechanism of initiation of unwinding. DNA unwinding was monitored directly by using agaro...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00066a039
更新日期:1993-04-20 00:00:00
abstract::The crystal structure of the 2[4Fe-4S] ferredoxin from Clostridium acidurici has been solved using X-ray diffraction data extending to atomic resolution, 0.94 A, recorded at 100 K. The model was refined with anisotropic representation of atomic displacement parameters for all non-hydrogen atoms and with hydrogens ridi...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi972155y
更新日期:1997-12-23 00:00:00
abstract::We have obtained a quantitative description of villin-nucleated actin polymerization in physiological salt by determining the concentrations of free villin (V), villin-actin monomer (VA), villin-actin dimer (VA2), and villin-actin oligomer (VAn). Over a range of actin-villin ratios from 0.1 to 20 we determined the con...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00383a019
更新日期:1987-05-05 00:00:00
abstract::Plexins are transmembrane proteins that serve as guidance receptors during angiogenesis, lymphangiogenesis, neuronal development, and zebrafish fin regeneration, with a putative role in cancer metastasis. Receptor dimerization or clustering, induced by extracellular ligand binding but modulated in part by the plexin t...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.6b00517
更新日期:2016-09-06 00:00:00
abstract::Strong absorbance of water at 1645 cm-1 has previously prevented dependable observation of infrared spectra of H2O solutions in the carbonyl region. We have obtained reliable spectra in pure water and in alcohol-water mixtures in this region and used them to study A.U polynucleotide interaction. Spectra in pure water ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00607a034
更新日期:1978-07-11 00:00:00
abstract::Histamine is released from mast cells and basophils by either immunological or nonimmunological mechanisms. Histamine, which is the most potent short acting mediator released from these cells, exerts its diverse biological actions by binding to cell surface histamine receptors. We report the affinity purification of h...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00182a008
更新日期:1994-04-26 00:00:00
abstract::The interaction between cytochrome c oxidase complex and adenosine triphosphate synthase (F1F0) complex in the purified, dispersed state and embedded in phospholipid vesicles was studied by differential scanning calorimetry and by spin-label electron paramagnetic resonance. The detergent-dispersed cytochrome oxidase a...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00127a036
更新日期:1992-03-31 00:00:00
abstract::Formiminotransferase-cyclodeaminase denatured in 6 M guanidine hydrochloride (Gdn.HCl) refolds and reassembles to the native octameric structure upon dilution into buffer. Both enzymic activities are recovered to greater than 90%, and the renatured enzyme "channels" the formiminotetrahydropteroylpentaglutamate interme...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00409a042
更新日期:1988-05-03 00:00:00
abstract::Using the baculovirus/Sf9 cell expression system, we have incorporated 99% 15N-enriched [alpha,epsilon-15N2]-L-lysine into the rod visual pigment rhodopsin. We have subsequently investigated the protonated Schiff base (pSB) linkage in the [alpha, epsilon-15N2]Lys-rhodopsin with cross-polarization magic angle spinning ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9830157
更新日期:1999-06-01 00:00:00