Modification of the conformational equilibria in the sodium and potassium dependent adenosinetriphosphatase with glutaraldehyde.

Abstract:

:Glutaraldehyde treatment of electroplax membrane preparations of Na,K-ATPase leads to irreversible changes in the enzymic behavior of the protein, which are not due to modification of the active site. When the glutaraldehyde treatment is carried out in a medium containing K+ and without Na+, the "K+-modified enzyme" so produced shows the following changes in enzymic properties: The steady-state phosphorylation by ATP and the rate of ATP-ADP exchange are decreased to approximately 40% of control, while Na,K-ATPase activity decreases to approximately 15% of control. Phosphatase activity is decreased very little, but the potassium activation parameters of the reaction are changed, from K0.5 approximately equal to 5 mM and nH = 1.9 in control to K0.5 approximately equal to 0.5 mM and nH = 1 in K+-modified enzyme. KI(app) for nucleotide inhibition of phosphatase activity is increased significantly. Changes in the cation dependence of the ATPase reaction are also observed. All of these effects can be explained by assuming that the cross-linking of surface groups in protein subunits when they are in conformation E2 shifts the intrinsic conformational equilibrium of the enzyme toward E2. We considered the simplest mathematical model for the coupling between K+ binding and the conformational equilibrium, with equivalent potassium sites that must be simultaneously in the same state. If one assumes that the potassium activation of phosphatase activity in the K+-modified enzyme reflects the affinity for K+ of E2, the behavior of the phosphatase activity in the native enzyme can be fit if there are only two potassium sites, whose affinity is 80-fold higher in E2 than in E1, and the equilibrium constant for E2 in equilibrium E1 is about 250. The same sites can explain the activation of dephosphorylation during ATP hydrolysis. Independent of the model chosen, potassium ions must be required for the catalytic action of form E2 and cannot be merely "allosteric activators". The enzyme modified with glutaraldehyde in a medium containing Na+ also has interesting properties, but their rationalization is less straightforward. The Na,K-ATPase activity is inhibited more than the "partial reactions", as in the K+-modified enzyme. We suggest that this is a generally expected result of modifications of the enzyme.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Chipman DM,Lev A

doi

10.1021/bi00288a016

subject

Has Abstract

pub_date

1983-09-13 00:00:00

pages

4450-9

issue

19

eissn

0006-2960

issn

1520-4995

journal_volume

22

pub_type

杂志文章
  • Assignment of heme resonances and determination of the electronic structures of high- and low-spin nitrophorin 2 by 1H and 13C NMR spectroscopy: an explanation of the order of heme methyl resonances in high-spin ferriheme proteins.

    abstract::The (1)H NMR resonances of the heme substituents of the low-spin Fe(III) form of nitrophorin 2, as its complexes with N-methylimidazole (NP2-NMeIm) and imidazole (NP2-ImH), have been assigned by a combination of (1)H homonuclear two-dimensional NMR techniques and (1)H-(13)C HMQC. Complete assignment of the proton and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026765w

    authors: Shokhireva TKh,Shokhirev NV,Walker FA

    更新日期:2003-01-28 00:00:00

  • Contribution of light chain residues to high affinity binding in an HIV-1 antibody explored by combinatorial scanning mutagenesis.

    abstract::Detailed analysis of factors governing high affinity antibody-antigen interactions yields important insight into molecular recognition and facilitates the design of functional antibody libraries. Here we describe comprehensive mutagenesis of the light chain complementarity determining regions (CDRs) of HIV-1 antibody ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100293q

    authors: Da Silva GF,Harrison JS,Lai JR

    更新日期:2010-07-06 00:00:00

  • Stabilizing and Understanding a Miniprotein by Rational Redesign.

    abstract::Miniproteins reduce the complexity of the protein-folding problem allowing systematic studies of contributions to protein folding and stabilization. Here, we describe the rational redesign of a miniprotein, PPα, comprising a polyproline II helix, a loop, and an α helix. The redesign provides a de novo framework for in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00067

    authors: Porter Goff KL,Nicol D,Williams C,Crump MP,Zieleniewski F,Samphire JL,Baker EG,Woolfson DN

    更新日期:2019-07-16 00:00:00

  • Diepoxybutane cross-links DNA at 5'-GNC sequences.

    abstract::Epoxides are cancer-causing agents chemically analogous to the nitrogen mustards, a family of powerful antitumor drugs. We found that the DNA interstrand cross-linking sequence preference of diepoxybutane is the same as that of the mustard mechlorethamine: 5'-GNC. Therefore, the genomic site of cross-linking alone can...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00059a034

    authors: Millard JT,White MM

    更新日期:1993-03-02 00:00:00

  • Interfacial catalysis by phospholipase A2: substrate specificity in vesicles.

    abstract::The binding equilibrium of phospholipase A2 (PLA2) to the substrate interface influences many aspects of the overall kinetics of interfacial catalysis by this enzyme. For example, the interpretation of kinetic data on substrate specificity was difficult when there was a significant kinetic contribution from the interf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00243a037

    authors: Ghomashchi F,Yu BZ,Berg O,Jain MK,Gelb MH

    更新日期:1991-07-23 00:00:00

  • Isoforms of the EP3 subtype of human prostaglandin E2 receptor transduce both intracellular calcium and cAMP signals.

    abstract::The EP3 subtype of prostaglandin E2 receptor transduces diverse physiological responses in mammalian tissues through signaling pathways coupled to heterotrimeric G proteins. Distinct cDNA clones encoding five isoforms of the EP3 receptor were isolated from a human uterus cDNA library. The human EP3 receptor isoforms d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00252a016

    authors: An S,Yang J,So SW,Zeng L,Goetzl EJ

    更新日期:1994-12-06 00:00:00

  • Binding analysis of 1alpha- and 17alpha-dihydrotestosterone derivatives to homodimeric sex hormone-binding globulin.

    abstract::Binding studies of the interaction of immobilized 1alpha- and 17alpha-aminoalkyl derivatives of 5alpha-dihydrotestosterone (DHT) with purified N-deglycosylated homodimeric human sex hormone-binding globulin (SHBG) were performed using a surface plasmon resonance biosensor. These 1alpha- and 17alpha-derivatives with sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035269k

    authors: Metzger J,Schnitzbauer A,Meyer M,Söder M,Cuilleron CY,Hauptmann H,Huber E,Luppa PB

    更新日期:2003-11-25 00:00:00

  • Preparation and X-ray structures of metal-free, dicobalt and dimanganese forms of soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath).

    abstract::A three-component soluble methane monooxygenase (sMMO) enzyme system catalyzes the hydroxylation of methane to methanol at a carboxylate-bridged diiron center housed in the alpha-subunit of the hydroxylase (MMOH). Catalysis is facilitated by the presence of a regulatory protein (MMOB) and inhibited by MMOD, a protein ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048140z

    authors: Sazinsky MH,Merkx M,Cadieux E,Tang S,Lippard SJ

    更新日期:2004-12-28 00:00:00

  • Inhibition of rabbit globin mRNA translation by sequence-specific oligodeoxyribonucleotides.

    abstract::Oligodeoxyribonucleotides 8-12 nucleotides in length whose sequences are complementary to the 5' end, the initiation codon regions, or the coding regions of rabbit globin mRNA were tested for their ability to inhibit translation in a rabbit reticulocyte lysate and in a wheat germ extract. The oligomers interact specif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a015

    authors: Blake KR,Murakami A,Miller PS

    更新日期:1985-10-22 00:00:00

  • Effects of pH on the Rieske protein from Thermus thermophilus: a spectroscopic and structural analysis.

    abstract::The Rieske protein from Thermus thermophilus (TtRp) and a truncated version of the protein (truncTtRp), produced to achieve a low-pH crystallization condition, have been characterized using UV-visible and circular dichroism spectroscopies. TtRp and truncTtRp undergo a change in the UV-visible spectra with increasing p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901126u

    authors: Konkle ME,Muellner SK,Schwander AL,Dicus MM,Pokhrel R,Britt RD,Taylor AB,Hunsicker-Wang LM

    更新日期:2009-10-20 00:00:00

  • A sequence element necessary for self-cleavage of the antigenomic hepatitis delta RNA in 20 M formamide.

    abstract::The genomic and antigenomic RNAs of hepatitis delta virus are capable of self-cleavage and show no significant sequence similarities to other known self-cleaving RNAs. We have derived an antigenomic delta RNA which cleaves to completion in 15 s in 9 mM magnesium at 37 degrees C and is capable of efficient self-cleavag...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00155a015

    authors: Smith JB,Gottlieb PA,Dinter-Gottlieb G

    更新日期:1992-10-13 00:00:00

  • Kinetics of polymerization of a fluoresceinated derivative of complement protein C9 by the membrane-bound complex of complement proteins C5b-8.

    abstract::The fluorescence self-quenching by energy transfer of FITC-C9, a fluoresceinated derivative of human complement protein C9 [Sims, P.J. (1984) Biochemistry (preceding paper in this issue)], has been used to monitor the kinetics of C9 polymerization induced by the membrane-associated complex of complement proteins C5b-8...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00309a021

    authors: Sims PJ,Wiedmer T

    更新日期:1984-07-03 00:00:00

  • Interaction of protein kinase C isozymes with Rho GTPases.

    abstract::Evidence is provided for direct protein-protein interactions between protein kinase C (PKC) alpha, betaI, betaII, gamma, delta, epsilon, and zeta and members of the Rho family of small GTPases. Previous investigations, based on the immunoprecipitation approach, have provided evidence consistent with a direct interacti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001654n

    authors: Slater SJ,Seiz JL,Stagliano BA,Stubbs CD

    更新日期:2001-04-10 00:00:00

  • Tubulin-zinc interactions: binding and polymerization studies.

    abstract::The binding of Zn2+ to tubulin and the ability of this cation to promote the polymorphic assembly of the protein were examined. Equilibrium binding showed the existence of more than 60 potential Zn2+ binding sites on the dimer, including a number of high-affinity sites. The number of high-affinity sites, estimated by ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00270a032

    authors: Eagle GR,Zombola RR,Himes RH

    更新日期:1983-01-04 00:00:00

  • The role of methionine-192 of the chymotrypsin active site in the binding and catalysis of mono(amino acid) and peptide substrates.

    abstract::We find that specific oxidation for the Met-192 residue in delta-chymotrypsin to methionine sulfoxide results in a twofold increase in Km(app) and unchanged kcat in the hydrolysis of N-acetyl mono(amino acid) amide substrates. However, the catalyzed hydrolyses of N-acetyl dipeptide amide substrates by (methionine sulf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00664a006

    authors: Treadway WJ Jr,Schultz RM

    更新日期:1976-09-21 00:00:00

  • Photoinactivation and photoaffinity labeling of tryptophan synthase alpha 2 beta 2 complex by the product analogue 6-azido-L-tryptophan.

    abstract::The photoaffinity reagent 6-azido-L-tryptophan was synthesized by chemical methods. It binds reversibly in the dark to the alpha 2 beta 2 complex of tryptophan synthase of Escherichia coli and forms a quinonoid intermediate with enzyme-bound pyridoxal phosphate (lambda max = 476 nm). The absorbance of this chromophore...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00338a031

    authors: Miles EW,Phillips RS

    更新日期:1985-08-13 00:00:00

  • Specific activation of transcription initiation by the sequence-specific DNA-binding agents distamycin A and netropsin.

    abstract::A series of promoters with nine base-pair substitutions in the spacer DNA separating the -10 and -35 regions was used to demonstrate that Escherichia coli RNA polymerase is sensitive to events affecting the spacer DNA--a region not directly contacted by the enzyme. The drugs distamycin A and netropsin specifically enh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00377a040

    authors: Bruzik JP,Auble DT,deHaseth PL

    更新日期:1987-02-10 00:00:00

  • Perturbation of the carboxy terminus of HIV-1 Rev affects multimerization on the Rev responsive element.

    abstract::Perturbations within the transactivation and carboxy-terminal domains of HIV-1 Rev were examined for effects on Rev responsive element (RRE) binding activities in vitro and biological activity in vivo. Binding affinities, specificities, and multimerization of the transactivation mutants M10 and Rev/Rex M10-16 on the R...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00085a028

    authors: Daly TJ,Rennert P,Lynch P,Barry JK,Dundas M,Rusche JR,Doten RC,Auer M,Farrington GK

    更新日期:1993-08-31 00:00:00

  • Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides.

    abstract::We studied the interactions between the SH2 domain of growth factor receptor binding protein 2 (Grb2) and ErbB receptor-derived phosphotyrosyl peptides using molecular dynamics, free energy calculations, and surface plasmon resonance (SPR) analysis. Binding free energies for nine phosphotyrosyl peptides were calculate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034113h

    authors: Suenaga A,Hatakeyama M,Ichikawa M,Yu X,Futatsugi N,Narumi T,Fukui K,Terada T,Taiji M,Shirouzu M,Yokoyama S,Konagaya A

    更新日期:2003-05-13 00:00:00

  • The possible relationship between a membrane conformational change and photosystem II dependent hydrogen ion accumulation and adenosine 5'-triphosphate synthesis.

    abstract::Data are presented which suggest that photosystem II dependent hydrogen ion accumulation and ATP synthesis can occur only after the lamellar membranes have undergone a conformational change. This membrane conformational change is detected by the electron transport dependent incorporation of diazonium benzene[35S]sulfo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00691a008

    authors: Giaquinta RT,Ort DR,Dilley RA

    更新日期:1975-10-07 00:00:00

  • Prion-like p53 Amyloids in Cancer.

    abstract::The global transcription factor, p53, is a master regulator of gene expression in cells. Mutations in the TP53 gene promote unregulated cell growth through the inactivation of downstream effectors of the p53 pathway. In fact, mutant p53 is highly prone to misfolding and frequently resides inside the cell as large aggr...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.9b00796

    authors: Navalkar A,Ghosh S,Pandey S,Paul A,Datta D,Maji SK

    更新日期:2020-01-21 00:00:00

  • Structures of Escherichia coli histidinol-phosphate aminotransferase and its complexes with histidinol-phosphate and N-(5'-phosphopyridoxyl)-L-glutamate: double substrate recognition of the enzyme.

    abstract::Histidinol-phosphate aminotransferase (HspAT) is a key enzyme on the histidine biosynthetic pathway. HspAT catalyzes the transfer of the amino group of L-histidinol phosphate (Hsp) to 2-oxoglutarate to form imidazole acetol phosphate (IAP) and glutamate. Thus, HspAT recognizes two kinds of substrates, Hsp and glutamat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002769u

    authors: Haruyama K,Nakai T,Miyahara I,Hirotsu K,Mizuguchi H,Hayashi H,Kagamiyama H

    更新日期:2001-04-17 00:00:00

  • Femtosecond time-resolved absorption spectroscopy of main-form and high-salt peridinin-chlorophyll a-proteins at low temperatures.

    abstract::Steady-state and femtosecond time-resolved optical methods have been used to compare the spectroscopic features and energy transfer dynamics of two systematically different light-harvesting complexes from the dinoflagellate Amphidinium carterae: main-form (MFPCP) and high-salt (HSPCP) peridinin-chlorophyll a-proteins....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061217u

    authors: Ilagan RP,Koscielecki JF,Hiller RG,Sharples FP,Gibson GN,Birge RR,Frank HA

    更新日期:2006-11-28 00:00:00

  • Efficient and selective photoaffinity labeling of the estrogen receptor using two nonsteroidal ligands that embody aryl azide or tetrafluoroaryl azide photoreactive functions.

    abstract::3-(4-Azido-2,3,5,6-tetrafluorobenzoyl)-6-hydroxy-2-(4- hydroxyphenyl)benzo[b]thiophene 1 (tetrafluoroaryl azide, TFAA) and its protio analogue 3-(4-azidobenzoyl)-6- hydroxy-2-(4-hydroxyphenyl)benzo[b]thiophene 2 (protioaryl azide, PAA), photoaffinity labeling (PAL) reagents for the estrogen receptor (ER), have been pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00223a018

    authors: Pinney KG,Carlson KE,Katzenellenbogen BS,Katzenellenbogen JA

    更新日期:1991-03-05 00:00:00

  • A common catalytic mechanism for proteins of the HutI family.

    abstract::Imidazolonepropionase (HutI) (imidazolone-5-propanote hydrolase, EC 3.5.2.7) is a member of the amidohydrolase superfamily and catalyzes the conversion of imidazolone-5-propanoate to N-formimino-L-glutamate in the histidine degradation pathway. We have determined the three-dimensional crystal structures of HutI from A...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800180g

    authors: Tyagi R,Eswaramoorthy S,Burley SK,Raushel FM,Swaminathan S

    更新日期:2008-05-20 00:00:00

  • Conformational Dynamics and Protein-Substrate Interaction of ABC Transporter BtuCD at the Occluded State Revealed by Molecular Dynamics Simulations.

    abstract::ATP-binding cassette (ABC) transporters are ubiquitous in all three kingdoms of life and are implicated in many clinically relevant physiological processes. They couple the energy released by ATP hydrolysis to facilitate substrate translocation across cell membranes. The crystal structures of type II ABC importers hav...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00386

    authors: Pan C,Weng J,Wang W

    更新日期:2016-12-13 00:00:00

  • Interactions of wild-type and mutant M protein of vesicular stomatitis virus with viral nucleocapsid and envelope in intact virions. Evidence from [125I]iodonaphthyl azide labeling and specific cross-linking.

    abstract::Four different temperature-sensitive M protein mutants (tsM) of vesicular stomatitis virus (VSV) were characterized with regard to the association of the mutated M protein either with nucleocapsids or with membranes in the intact virions. Virions were labeled with the photoreactive hydrophobic probe [125I]iodonaphthyl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00527a020

    authors: Mancarella DA,Lenard J

    更新日期:1981-11-24 00:00:00

  • Crystallographic structures of ribonuclease S variants with nonpolar substitution at position 13: packing and cavities.

    abstract::Seven hydrophobic residues ranging in size from glycine to phenylalanine have been substituted for the wild-type methionine residue at position 13 in a 15-residue truncated version (S15) of S-peptide, the small component of ribonuclease S. Complexes of both S-15 and the seven variants with S-protein yielded isomorphou...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00164a005

    authors: Varadarajan R,Richards FM

    更新日期:1992-12-15 00:00:00

  • The alpha-helical domain of liver fatty acid binding protein is responsible for the diffusion-mediated transfer of fatty acids to phospholipid membranes.

    abstract::Intestinal fatty acid binding protein (IFABP) and liver FABP (LFABP), homologous proteins expressed at high levels in intestinal absorptive cells, employ markedly different mechanisms for the transfer of fatty acids (FAs) to acceptor membranes. Transfer from IFABP occurs during protein-membrane collisional interaction...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0357356

    authors: Córsico B,Liou HL,Storch J

    更新日期:2004-03-30 00:00:00

  • Structure of human transferrin receptor oligosaccharides: conservation of site-specific processing.

    abstract::The human transferrin receptor (TfR) has three N-linked oligosaccharides. A combination of site-directed mutagenesis and carbohydrate and protein chemistry was used to characterize the structures of the N-linked oligosaccharides and to map their locations. We find that the type of oligosaccharide at each position was ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962884y

    authors: Hayes GR,Williams AM,Lucas JJ,Enns CA

    更新日期:1997-04-29 00:00:00