Interactions between phospholipids and NADH:ubiquinone oxidoreductase (complex I) from bovine mitochondria.

Abstract:

:NADH:ubiquinone oxidoreductase (complex I) from bovine heart mitochondria is a highly complicated, energy transducing, membrane-bound enzyme. It contains 46 different subunits and nine redox cofactors: a noncovalently bound flavin mononucleotide and eight iron-sulfur clusters. The mechanism of complex I is not known. Mechanistic studies using the bovine enzyme, a model for human complex I, have been precluded by the difficulty of preparing complex I which is pure, monodisperse, and fully catalytically active. Here, we describe and characterize a preparation of bovine complex I which fulfills all of these criteria. The catalytic activity is strongly dependent on the phospholipid content of the preparation, and three classes of phospholipid interactions with complex I have been identified. First, complex I contains tightly bound cardiolipin. Cardiolipin may be required for the structural integrity of the complex or play a functional role. Second, the catalytic activity is determined by the amounts of phosphatidylcholine (PC) and phosphatidylethanolamine (PE) which are bound to the complex. They are more weakly bound than cardiolipin, exchange with PC and PE in solution, and can substitute for one another. However, their nontransitory loss leads to irreversible functional impairment. Third, phospholipids are also required in the assay buffer for the purified enzyme to exhibit its full activity. It is likely that they are required for solubilization and presentation of the hydrophobic ubiquinone substrate.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Sharpley MS,Shannon RJ,Draghi F,Hirst J

doi

10.1021/bi051809x

subject

Has Abstract

pub_date

2006-01-10 00:00:00

pages

241-8

issue

1

eissn

0006-2960

issn

1520-4995

journal_volume

45

pub_type

杂志文章
  • Effect of the carbohydrate moiety on the secondary structure of beta 2-glycoprotein. I. Implications for the biosynthesis and folding of glycoproteins.

    abstract::By use of six highly purified exoglycosidases with well-defined specificity, the oligosaccharide units of human plasma beta 2-glycoprotein I (beta 2I) were modified by sequential enzymatic degradation. The released monosaccharides (NeuAc, Gal, GlcNAc, and Man) were quantified, and the carbohydrate compositions of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00478a020

    authors: Walsh MT,Watzlawick H,Putnam FW,Schmid K,Brossmer R

    更新日期:1990-07-03 00:00:00

  • Heat shock protein 80 of Neurospora crassa, a cytosolic molecular chaperone of the eukaryotic stress 90 family, interacts directly with heat shock protein 70.

    abstract::The subunit structure of Hsp80, the most abundant heat-shock protein of Neurospora crassa, was examined by chemical cross-linking of the purified protein in vitro. Resolution of glutaraldehyde-treated Hsp80 by sodium dodecyl sulfate-polyacrylamide gel electrophoresis SDS-PAGE suggests that the native state of this pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963030g

    authors: Freitag DG,Ouimet PM,Girvitz TL,Kapoor M

    更新日期:1997-08-19 00:00:00

  • The complete amino acid sequence of the major component myoglobin of dwarf sperm whale (Kogia simus).

    abstract::The complete amino acid sequence of the major component myoglobin from the dwarf sperm whale, Kogia simus, was determined by specific cleavage of the protein to obtain large peptides which are readily degraded by the automatic sequenator. Three easily separable peptides were obtained by cleaving the protein at its two...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00624a010

    authors: Dwulet FE,Jones BN,Lehman LD,Gurd FR

    更新日期:1977-03-08 00:00:00

  • Water structural changes in lumirhodopsin, metarhodopsin I, and metarhodopsin II upon photolysis of bovine rhodopsin: analysis by Fourier transform infrared spectroscopy.

    abstract::Difference Fourier transform infrared spectra of lumirhodopsin, metarhodopsin I, and metarhodopsin II versus rhodopsin were recorded with hydrated films of bovine rod outer segments at 200, 240, and 270 K. In the region between 3700 and 3450 cm-1, the O-H stretching vibrational bands of water were identified by H(2)18...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00096a013

    authors: Maeda A,Ohkita YJ,Sasaki J,Shichida Y,Yoshizawa T

    更新日期:1993-11-16 00:00:00

  • Association of melittin with the isolated myosin light chains.

    abstract::Melittin is a 26-residue peptide which undergoes high-affinity calcium-dependent binding by calmodulin [Barnette, M.S., Daly, R., & Weiss, B. (1983) Biochem. Pharmacol. 32, 2929; Comte, M., Maulet, Y., & Cox, J.A. (1983) Biochem. J. 209, 269; Anderson, S.R., & Malencik, D.A. (1986) Calcium Cell Funct. 6, 1]. The resul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00406a021

    authors: Malencik DA,Anderson SR

    更新日期:1988-03-22 00:00:00

  • Sequence-selective binding of amiloride to DNA.

    abstract::Nuclease footprinting techniques have been employed to investigate the interaction between the diuretic drug amiloride, a sodium channel blocker with potential therapeutic use in the treatment of cystic fibrosis, and three DNA fragments of defined sequence. Using either DNAse I or micrococcal nuclease as probes, an un...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00061a008

    authors: Bailly C,Cuthbert AW,Gentle D,Knowles MR,Waring MJ

    更新日期:1993-03-16 00:00:00

  • Acidic residues are involved in substrate recognition by two soluble protein tyrosine phosphatases, PTP-5 and rrbPTP-1.

    abstract::The mechanisms for substrate recognition by two cytoplasmic protein tyrosine phosphatases, PTP-5 and rrbPTP-1, were investigated. Phosphorylation sites on tyrosine-phosphorylated casein, a model PTP substrate, were characterized. Two peptides based on casein phosphorylation sites and one peptide based on the tyrosine ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00097a019

    authors: Hippen KL,Jakes S,Richards J,Jena BP,Beck BL,Tabatabai LB,Ingebritsen TS

    更新日期:1993-11-23 00:00:00

  • Murine epidermal growth factor: structure and function.

    abstract::Murine epidermal growth factor (EGF), a 53 amino acid protein, has been modified by enzymic digestion, site-specific chemical reactions, and recombinant DNA technology. After trypsin digestion the EGF derivatives EGF1-48 (called EGF-T) and EGF1-45 (called EGF-T2) were separated from the residual EGF and the C-terminal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00414a005

    authors: Burgess AW,Lloyd CJ,Smith S,Stanley E,Walker F,Fabri L,Simpson RJ,Nice EC

    更新日期:1988-07-12 00:00:00

  • Methylation of histone H3 by coactivator-associated arginine methyltransferase 1.

    abstract::The preferential in vitro methylation of histone H3 by coactivator-associated arginine methyltransferase 1 (CARM1) has been proposed as a basis for its ability to enhance gene transcription [Chen, D., et al. (1999) Science 284, 2174-2177]. To further evaluate the significance of H3 methylation, we studied the kinetics...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002631b

    authors: Schurter BT,Koh SS,Chen D,Bunick GJ,Harp JM,Hanson BL,Henschen-Edman A,Mackay DR,Stallcup MR,Aswad DW

    更新日期:2001-05-15 00:00:00

  • The amino-terminal tail of glycogen phosphorylase is a switch for controlling phosphorylase conformation, activation, and response to ligands.

    abstract::Glycogen phosphorylase is a muscle enzyme which metabolizes glycogen, producing glucose-1-phosphate, which can be used for the production of ATP. Phosphorylase activity is regulated by phosphorylation/dephosphorylation, and by the allosteric binding of numerous effectors. In this work, we have studied 10 site-directed...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0020372

    authors: Biorn AC,Graves DJ

    更新日期:2001-05-01 00:00:00

  • Lysine Side-Chain Dynamics in the Binding Site of Homeodomain/DNA Complexes As Observed by NMR Relaxation Experiments and Molecular Dynamics Simulations.

    abstract::An important but poorly characterized contribution to the thermodynamics of protein-DNA interactions is the loss of entropy that occurs from restricting the conformational freedom of amino acid side chains. The effect of restricting the flexibility of several side chains at a protein-DNA interface may be comparable in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00195

    authors: Baird-Titus JM,Thapa M,Doerdelmann T,Combs KA,Rance M

    更新日期:2018-05-15 00:00:00

  • Determination of the essentiality of the eight cysteine residues of the NrtA protein for high-affinity nitrate transport and the generation of a functional cysteine-less transporter.

    abstract::All eight cysteine residues, C90, C94, C143, C147, C219, C325, C367, and C431, present in transmembrane domains of the Aspergillus nidulans NrtA nitrate transporter protein were altered individually by site-specific mutagenesis. The results indicate that six residues, C90, C147, C219, C325, C367, and C431, are not req...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047732e

    authors: Unkles SE,Rouch DA,Wang Y,Siddiqi MY,Okamoto M,Stephenson RM,Kinghorn JR,Glass AD

    更新日期:2005-04-12 00:00:00

  • Explanation of pre-steady-state kinetics and decreased burst amplitude of HIV-1 reverse transcriptase at sites of modified DNA bases with an additional, nonproductive enzyme-DNA-nucleotide complex.

    abstract::The majority of pre-steady-state kinetic investigations with HIV-1 reverse transcriptase (HIV-1 RT) have reported substoichiometric bursts (30-50%) of product formation in the initial reaction cycle. By using quantitative amino acid analysis, we have revised the extinction coefficient of the HIV-1 RT heterodimer and s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982163u

    authors: Furge LL,Guengerich FP

    更新日期:1999-04-13 00:00:00

  • The Non-native Helical Intermediate State May Accumulate at Low pH in the Folding and Aggregation Landscape of the Intestinal Fatty Acid Binding Protein.

    abstract::There has been widespread interest in studying early intermediate states and their roles in protein folding. The interest in intermediate states has been further emphasized in the recent literature because of their implications for protein aggregation. Unfortunately, direct kinetic characterization of intermediates ha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00390

    authors: Sarkar-Banerjee S,Chowdhury S,Paul SS,Dutta D,Ghosh A,Chattopadhyay K

    更新日期:2016-08-16 00:00:00

  • Three-dimensional structure of ATP:corrinoid adenosyltransferase from Salmonella typhimurium in its free state, complexed with MgATP, or complexed with hydroxycobalamin and MgATP.

    abstract::In Salmonella typhimurium, formation of the cobalt-carbon bond in the biosynthetic pathway for adenosylcobalamin is catalyzed by the product of the cobA gene which encodes a protein of 196 amino acid residues. This enzyme is an ATP:co(I)rrinoid adenosyltransferase which transfers an adenosyl moiety from MgATP to a bro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002145o

    authors: Bauer CB,Fonseca MV,Holden HM,Thoden JB,Thompson TB,Escalante-Semerena JC,Rayment I

    更新日期:2001-01-16 00:00:00

  • Complete amino acid sequence of the 4Fe-4S, thermostable ferredoxin from Clostridium thermoaceticum.

    abstract::The complete amino acid sequence of the 4Fe-4S ferredoxin from the thermophilic bacterium Clostridium thermoaceticum has been determined. The protein is extremely thermostable and is the only known clostridial ferredoxin to contain a single [4Fe-4S] cluster. The sequence totals 63 residues and includes the first trypt...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00257a007

    authors: Elliott JI,Yang SS,Ljungdahl LG,Travis J,Reilly CF

    更新日期:1982-07-06 00:00:00

  • Hydrogen-deuterium substitution and solvent effects on the nitrogen-15 nuclear magnetic resonance of gramicidin S: evaluation of secondary structure.

    abstract::Complete assignments of nitrogen-15 resonances of gramicidin S have been made in dimethyl sulfoxide, trifluoroethanol, and in a solvent mixture of dimethyl sulfoxide (50%) and methanol (50%). The assignments are achieved by utilizing the secondary structure of gramicidin S, by comparing the nitrogen-15 spectrum of gra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00606a005

    authors: Khaled MA,Urry DW,Sugano H,Miyoshi M,Izumiya N

    更新日期:1978-06-27 00:00:00

  • Dehydroquinate synthase: the use of substrate analogues to probe the early steps of the catalyzed reaction.

    abstract::The early steps of the proposed mechanistic pathway for dehydroquinate synthase have been probed with a series of substrate analogues. These analogues, 3-9, are structurally prohibited from undergoing the beta-elimination of inorganic phosphate that represents the committed step in the conversion of the substrate 3-de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00445a010

    authors: Bender SL,Widlanski T,Knowles JR

    更新日期:1989-09-19 00:00:00

  • Uniform 13C isotope labeling of proteins with sodium acetate for NMR studies: application to human carbonic anhydrase II.

    abstract::Uniform double labeling of proteins for NMR studies can be prohibitively expensive, even with an efficient expression and purification scheme, due largely to the high cost of [13C6, 99%]glucose. We demonstrate here that uniformly (greater than 95%) 13C and 15N double-labeled proteins can be prepared for NMR structure/...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00232a017

    authors: Venters RA,Calderone TL,Spicer LD,Fierke CA

    更新日期:1991-05-07 00:00:00

  • HlyC, the internal protein acyltransferase that activates hemolysin toxin: the role of conserved tyrosine and arginine residues in enzymatic activity as probed by chemical modification and site-directed mutagenesis.

    abstract::Internal fatty acylation of proteins is a recognized means of modifying biological behavior. Escherichia coli hemolysin A (HlyA), a toxic protein, is transcribed as a nontoxic protein and made toxic by internal acylation of two lysine residue epsilon-amino groups; HlyC catalyzes the acyl transfer from acyl-acyl carrie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990138y

    authors: Trent MS,Worsham LM,Ernst-Fonberg ML

    更新日期:1999-07-06 00:00:00

  • Interactions between heme d and heme b595 in quinol oxidase bd from Escherichia coli: a photoselection study using femtosecond spectroscopy.

    abstract::Femtosecond spectroscopy was performed on CO-liganded (fully reduced and mixed-valence states) and O(2)-liganded quinol oxidase bd from Escherichia coli. Substantial polarization effects, unprecedented for optical studies of heme proteins, were observed in the CO photodissociation spectra, implying interactions betwee...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0158019

    authors: Borisov VB,Liebl U,Rappaport F,Martin JL,Zhang J,Gennis RB,Konstantinov AA,Vos MH

    更新日期:2002-02-05 00:00:00

  • The platelet actin cytoskeleton associates with SNAREs and participates in alpha-granule secretion.

    abstract::Following platelet activation, platelets undergo a dramatic shape change mediated by the actin cytoskeleton and accompanied by secretion of granule contents. While the actin cytoskeleton is thought to influence platelet granule secretion, the mechanism for this putative regulation is not known. We found that disruptio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100541t

    authors: Woronowicz K,Dilks JR,Rozenvayn N,Dowal L,Blair PS,Peters CG,Woronowicz L,Flaumenhaft R

    更新日期:2010-06-01 00:00:00

  • The nitrite anion binds to human hemoglobin via the uncommon O-nitrito mode.

    abstract::The nitrite anion is known to oxidize and degrade hemoglobin (Hb). Recent literature reports suggest a nitrite reductase activity for Hb, converting nitrite into nitric oxide. Surprisingly, no structural information about Hb-nitrite interactions has been reported. We have determined the crystal structure of the ferric...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801015c

    authors: Yi J,Safo MK,Richter-Addo GB

    更新日期:2008-08-12 00:00:00

  • Zebrafish neuroglobin is a cell-membrane-penetrating globin.

    abstract::Neuroglobin (Ngb) is a recently discovered vertebrate heme protein that is expressed in the brain and can reversibly bind oxygen. Mammalian Ngb is involved in neuroprotection under oxidative stress conditions, such as ischemia and reperfusion. We previously demonstrated that human ferric Ngb binds to the alpha subunit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800286m

    authors: Watanabe S,Wakasugi K

    更新日期:2008-05-13 00:00:00

  • The crystal structure of eosinophil cationic protein in complex with 2',5'-ADP at 2.0 A resolution reveals the details of the ribonucleolytic active site.

    abstract::Eosinophil cationic protein (ECP) is a component of the eosinophil granule matrix. It shows marked toxicity against helminth parasites, bacteria single-stranded RNA viruses, and host epithelial cells. Secretion of human ECP is related to eosinophil-associated allergic, asthmatic, and inflammatory diseases. ECP belongs...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0264521

    authors: Mohan CG,Boix E,Evans HR,Nikolovski Z,Nogués MV,Cuchillo CM,Acharya KR

    更新日期:2002-10-08 00:00:00

  • Role of mitochondrial and cytoplasmic serine hydroxymethyltransferase isozymes in de novo purine synthesis in Saccharomyces cerevisiae.

    abstract::One-carbon units are essential to a variety of anabolic processes which yield necessary cellular components including purines, pyrimidines, amino acids, and lipids. Serine hydroxymethyltransferase (SHMT) is the major provider of one-carbon units in the cell. The other product of this reaction is glycine. Both of these...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971610n

    authors: Kastanos EK,Woldman YY,Appling DR

    更新日期:1997-12-02 00:00:00

  • Human alpha- to zeta-thrombin cleavage occurs with neutrophil cathepsin G or chymotrypsin while fibrinogen clotting activity is retained.

    abstract::Human neutrophil cathepsin G or bovine chymotrypsin proteolytically cleaved human alpha-thrombin at the B-chain Trp148-Thr149 bond generating a new form, zeta-thrombin. While incubation of alpha-thrombin with cathepsin G at pH 7.4 and 37 degrees C resulted in a partial loss of fibrinogen clotting activity, 86 +/- 13% ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00466a017

    authors: Brezniak DV,Brower MS,Witting JI,Walz DA,Fenton JW 2nd

    更新日期:1990-04-10 00:00:00

  • Specific RNA binding by Q beta coat protein.

    abstract::The interaction between the bacteriophage Q beta coat protein and its specific binding site on Q beta genomic RNA was characterized by using a nitrocellulose filter binding assay. Q beta coat protein bound to a synthetic 29-nucleotide RNA hairpin with an association constant of 400 microM-1 at 4 degrees C, 0.2 M ionic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00427a011

    authors: Witherell GW,Uhlenbeck OC

    更新日期:1989-01-10 00:00:00

  • Insights into the catalytic mechanisms of phenylalanine and tryptophan hydroxylase from kinetic isotope effects on aromatic hydroxylation.

    abstract::Phenylalanine hydroxylase (PheH) and tryptophan hydroxylase (TrpH) catalyze the aromatic hydroxylation of phenylalanine and tryptophan, forming tyrosine and 5-hydroxytryptophan, respectively. The reactions of PheH and TrpH have been investigated with [4-(2)H]-, [3,5-(2)H(2)]-, and (2)H(5)-phenylalanine as substrates. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0607554

    authors: Pavon JA,Fitzpatrick PF

    更新日期:2006-09-12 00:00:00

  • Identification of tyrosine residues that are susceptible to lactoperoxidase-catalyzed iodination on the surface of Escherichia coli 50s ribosomal subunits or 70s ribosomes.

    abstract::Further to our studies on the Escherichia coli 30S ribosomal subunit, the detailed surface topography of both 50S subunits and 70S ribosomes has been investigated by using iodination catalyzed by immobilized lactoperoxidase as the surface probe. In the 50S subunit, only proteins L2, L5, L10, and L11 were iodinated to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00282a019

    authors: Maly P,Wower J,Zobawa M,Brimacombe R

    更新日期:1983-06-21 00:00:00