Acidic residues are involved in substrate recognition by two soluble protein tyrosine phosphatases, PTP-5 and rrbPTP-1.

Abstract:

:The mechanisms for substrate recognition by two cytoplasmic protein tyrosine phosphatases, PTP-5 and rrbPTP-1, were investigated. Phosphorylation sites on tyrosine-phosphorylated casein, a model PTP substrate, were characterized. Two peptides based on casein phosphorylation sites and one peptide based on the tyrosine phosphorylation site of reduced, carboxamidomethylated and maleylated (RCM) lysozyme were tested as PTP substrates. The three peptides were dephosphorylated by PTP-5 and rrbPTP-1 at rates comparable to those of the corresponding sites on the intact proteins. This indicates that peptides based on the two model PTP substrates, casein and RCM-lysozyme, contained all or most of the structural information necessary for PTP-5 and rrbPTP-1 substrate recognition. Structural elements required for substrate recognition by PTP-5 and rrbPTP-1 were also investigated. Km values for dephosphorylation of three simple aromatic phosphate esters (phosphotyrosine, p-nitrophenyl phosphate, and phenyl phosphate) by rrbPTP-1 were about 5000-fold higher than those obtained for the peptide and protein substrates. This indicates that recognition of protein and peptide substrates involves structural elements in addition to the phosphate group and the aromatic tyrosine ring of phosphotyrosine. Analysis of the effects of truncations and Ala for polar substitutions on the reactivity with PTP-5 and rrbPTP-1 of peptides based on casein, RCM-lysozyme, and angiotensin II indicated that Asp or Glu within the first five residues on the N-terminal side of phosphotyrosine increased peptide reactivity with both PTP's. Asn residues were unable or only weakly able to substitute for Asp residues.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Hippen KL,Jakes S,Richards J,Jena BP,Beck BL,Tabatabai LB,Ingebritsen TS

doi

10.1021/bi00097a019

subject

Has Abstract

pub_date

1993-11-23 00:00:00

pages

12405-12

issue

46

eissn

0006-2960

issn

1520-4995

journal_volume

32

pub_type

杂志文章
  • Hydrophobic core fluidity of homologous protein domains: relation of side-chain dynamics to core composition and packing.

    abstract::The side-chain dynamics of methyl groups in two structurally related proteins from the fibronectin type III (fnIII) superfamily, the third fnIII domain from human tenascin (TNfn3) and the tenth fnIII domain from human fibronectin (FNfn10), have been studied by NMR spectroscopy. Side-chain order parameters reveal that ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035658e

    authors: Best RB,Rutherford TJ,Freund SM,Clarke J

    更新日期:2004-02-10 00:00:00

  • The DNA sequence of the human beta-globin region is strongly biased in favor of long strings of contiguous purine or pyrimidine residues.

    abstract::The DNA sequence of the human beta-globin region, comprising over 67 kilobase pairs, has been analyzed for the occurrence of strings of contiguous purine or pyrimidine residues. Tracts of 10 or more contiguous residues are found 4 times more frequently than would be expected with a random distribution of bases, so tha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00398a050

    authors: Behe MJ

    更新日期:1987-12-01 00:00:00

  • Recombinant hemoglobin(alpha 29leucine --> phenylalanine, alpha 96valine --> tryptophan, beta 108asparagine --> lysine) exhibits low oxygen affinity and high cooperativity combined with resistance to autoxidation.

    abstract::Using our hemoglobin expression system in Escherichia coli, we have constructed three recombinant hemoglobins (rHbs) with amino acid substitutions located in the alpha(1)beta(1) and alpha(1)beta(2) subunit interfaces and in the distal heme pocket of the alpha-chain: rHb(alphaV96W, betaN108K), rHb(alphaL29F, alphaV96W,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991271t

    authors: Jeong ST,Ho NT,Hendrich MP,Ho C

    更新日期:1999-10-05 00:00:00

  • Methyl (Alkyl)-Coenzyme M Reductases: Nickel F-430-Containing Enzymes Involved in Anaerobic Methane Formation and in Anaerobic Oxidation of Methane or of Short Chain Alkanes.

    abstract::Methyl-coenzyme M reductase (MCR) catalyzes the methane-forming step in methanogenic archaea. The active enzyme harbors the nickel(I) hydrocorphin coenzyme F-430 as a prosthetic group and catalyzes the reversible reduction of methyl-coenzyme M (CH3-S-CoM) with coenzyme B (HS-CoM) to methane and CoM-S-S-CoB. MCR is als...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.9b00164

    authors: Thauer RK

    更新日期:2019-12-31 00:00:00

  • Complement protein C1q recognizes enzymatically modified low-density lipoprotein through unesterified fatty acids generated by cholesterol esterase.

    abstract::We previously reported that enzymatically modified low-density lipoprotein (E-LDL) particles obtained by LDL treatment with trypsin and then cholesterol esterase are recognized by C1q and activate the C1 complex of complement. The objective of this study was to identify the E-LDL component(s) recognized by C1q. In add...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9021022

    authors: Biro A,Ling WL,Arlaud GJ

    更新日期:2010-03-16 00:00:00

  • Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site.

    abstract::We have used nucleobase substitution and kinetic analysis to test the hypothesis that hammerhead catalysis occurs by a general acid-base mechanism, in which nucleobases are directly involved in deprotonation of the attacking 2'-hydroxyl group and protonation of the 5'-oxygen that serves as the leaving group in the cle...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047941z

    authors: Han J,Burke JM

    更新日期:2005-05-31 00:00:00

  • Interaction and influence of phenylalanine-198 and threonine-199 on catalysis by human carbonic anhydrase III.

    abstract::Site-directed mutants of human carbonic anhydrase III were used to examine the role of Thr-199 and its interaction with Phe-198 in the catalyzed hydration of CO2. Threonine-199 is a hydrogen bond acceptor for the zinc-bound water, and Phe-198 forms part of the hydrophobic side of the active-site cavity of carbonic anh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00082a004

    authors: Chen X,Tu C,LoGrasso PV,Laipis PJ,Silverman DN

    更新日期:1993-08-10 00:00:00

  • A novel epsilon-cleavage within the transmembrane domain of the Alzheimer amyloid precursor protein demonstrates homology with Notch processing.

    abstract::Proteolytic processing of the transmembrane domain of the amyloid precursor protein (APP) is a key component of Alzheimer's disease pathogenesis. Using C-terminally tagged APP derivatives, we have identified by amino-terminal sequencing a novel cleavage site of APP, at Leu-49, distal to the gamma-secretase site. This ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015794o

    authors: Weidemann A,Eggert S,Reinhard FB,Vogel M,Paliga K,Baier G,Masters CL,Beyreuther K,Evin G

    更新日期:2002-02-26 00:00:00

  • Xenopus laevis hemoglobin and its hybrids with hemoglobin A+.

    abstract::Isolated alpha and beta chains from Xenopus laevis hemoglobin have been purified. The isolation procedure yields native alpha chains whose functional behavior has been characterized and compared with that of human alpha chains. Isolated beta chains in the presence of oxygen are characterized by low stability, and henc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00395a022

    authors: Condò SG,Giardina B,Bellelli A,Brunori M

    更新日期:1987-10-20 00:00:00

  • X-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase.

    abstract::Heme oxygenase (HO) catalyzes the regiospecific cleavage of the porphyrin ring of heme using reducing equivalents and O2 to produce biliverdin, iron, and CO. Because CO has a cytoprotective effect through the p38-MAPK pathway, HO is a potential therapeutic target in cancer. In fact, inhibition of the HO isoform HO-1 r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062264p

    authors: Sugishima M,Higashimoto Y,Oishi T,Takahashi H,Sakamoto H,Noguchi M,Fukuyama K

    更新日期:2007-02-20 00:00:00

  • Electron transfer within nitrogenase: evidence for a deficit-spending mechanism.

    abstract::The reduction of substrates catalyzed by nitrogenase utilizes an electron transfer (ET) chain comprised of three metalloclusters distributed between the two component proteins, designated as the Fe protein and the MoFe protein. The flow of electrons through these three metalloclusters involves ET from the [4Fe-4S] clu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201003a

    authors: Danyal K,Dean DR,Hoffman BM,Seefeldt LC

    更新日期:2011-11-01 00:00:00

  • Free energy rhythms in Saccharomyces cerevisiae: a dynamic perspective with implications for ribosomal biogenesis.

    abstract::To describe the time course of cellular systems, we integrate ideas from thermodynamics and information theory to discuss the work needed to change the state of the cell. The biological example analyzed is experimental microarray transcription level oscillations of yeast in the different phases as characterized by oxy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3016982

    authors: Gross A,Li CM,Remacle F,Levine RD

    更新日期:2013-03-05 00:00:00

  • Chemistry of gene silencing: the mechanism of NAD+-dependent deacetylation reactions.

    abstract::The Sir2 enzyme family is responsible for a newly classified chemical reaction, NAD(+)-dependent protein deacetylation. New peptide substrates, the reaction mechanism, and the products of the acetyl transfer to NAD(+) are described for SIR2. The final products of SIR2 reactions are the deacetylated peptide and the 2' ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011858j

    authors: Sauve AA,Celic I,Avalos J,Deng H,Boeke JD,Schramm VL

    更新日期:2001-12-25 00:00:00

  • Comparisons of redox kinetics of methemerythrin and mu-sulfidomethemerythrin. Implications for interactions with cytochrome b5.

    abstract::We have examined the effects on redox kinetics of changing the reduction potential of the mu-oxo-bridged binuclear iron center in octameric hemerythrin (Hr) from Phascolopsis gouldii. The opportunity to examine such effects is provided by the availability of mu-sulfidomethemerythrin (mu-S2-metHr), whose [Fe(III),Fe(II...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00400a033

    authors: Pearce LL,Utecht RE,Kurtz DM Jr

    更新日期:1987-12-29 00:00:00

  • Cyanine dye N744 inhibits tau fibrillization by blocking filament extension: implications for the treatment of tauopathic neurodegenerative diseases.

    abstract::Tau fibrillization is a potential therapeutic target for Alzheimer's and other neurodegenerative diseases. Small molecules capable of both inhibiting aggregation and promoting filament disaggregation have been discovered, but knowledge of their mechanism of action and potential for testing in biological models is frag...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050387o

    authors: Necula M,Chirita CN,Kuret J

    更新日期:2005-08-02 00:00:00

  • Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle protein.

    abstract::The hydrogen exchange behavior of a four-helix bundle protein in low concentrations of denaturant reveals some partially unfolded forms that are significantly more stable than the fully unfolded state. Kinetic folding of the protein, however, is apparently two-state in the absence of the accumulation of early folding ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025872n

    authors: Chu R,Pei W,Takei J,Bai Y

    更新日期:2002-06-25 00:00:00

  • Biophysical characterization of the c-Myb DNA-binding domain.

    abstract::We have examined proteins containing the DNA-binding domain of c-Myb with biophysical methods. This DNA-binding domain consists of three imperfect repeats (R1, R2, and R3) conserved among many species. Our results indicate that the DNA-binding domain forms unspecific and specific complexes with oligodeoxynucleotides. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00252a026

    authors: Ebneth A,Schweers O,Thole H,Fagin U,Urbanke C,Maass G,Wolfes H

    更新日期:1994-12-06 00:00:00

  • Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: a model system for analysis of solute effects on protein processes.

    abstract::Thermodynamic and structural evidence indicates that the DNA binding domains of lac repressor (lacI) exhibit significant conformational adaptability in operator binding, and that the marginally stable helix-turn-helix (HTH) recognition element is greatly stabilized by operator binding. Here we use circular dichroism a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0270992

    authors: Felitsky DJ,Record MT Jr

    更新日期:2003-02-25 00:00:00

  • Posttranslational modifications of the Ia-associated invariant protein p41 after gene transfer.

    abstract::Biochemical analysis of a rat fibroblast cell clone, transfected with the murine Ia associated invariant chain gene, demonstrates the expression of a family of proteins. This indicates that all members of the invariant protein family are derived from the same gene. The proteins p41, Ii, p27, p25, and p10, synthesized ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00411a028

    authors: Koch N

    更新日期:1988-05-31 00:00:00

  • Left handed double helices: effect of sequence on the spatial configuration of high anti nucleic acids.

    abstract::The conformational properties of purine-pyrimidine and pyrimidine-purine dinucleoside monophosphates in which the glycosidic torsion is fixed to congruent to 120 degree by the formation of a covalent link between the base and the sugar ring are explored by 1H NMR spectroscopy in order to obtain information about the s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00520a029

    authors: Dhingra MM,Sarma RH,Uesugi S,Shida T,Ikehara M

    更新日期:1981-08-18 00:00:00

  • Oxygen yield and thermoluminescence characteristics of a cyanobacterium lacking the manganese-stabilizing protein of photosystem II.

    abstract::Previous experiments have shown that a Synechocystis sp. PCC 6803 mutant (delta psbO) lacking the extrinsic manganese-stabilizing protein (MSP) exhibits impaired, but significant levels of H2O-splitting activity [Burnap, R., & Sherman, L.A. (1991) Biochemistry 30, 440-446]. [14C]DCMU-binding experiments now show that ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00147a027

    authors: Burnap RL,Shen JR,Jursinic PA,Inoue Y,Sherman LA

    更新日期:1992-08-18 00:00:00

  • Retinoschisin (RS1) interacts with negatively charged lipid bilayers in the presence of Ca2+: an atomic force microscopy study.

    abstract::Retinoschisin (RS1) is a retina-specific secreted protein encoding a conserved discoidin domain sequence. As an adhesion molecule, RS1 preserves the retinal cell architecture and promotes visual signal transduction. In young males, loss-of-function mutations in the X-linked retinoschisis gene (RS1) cause X-linked reti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1007029

    authors: Kotova S,Vijayasarathy C,Dimitriadis EK,Ikonomou L,Jaffe H,Sieving PA

    更新日期:2010-08-24 00:00:00

  • Molecular Basis for Allosteric Inhibition of GTP-Bound H-Ras Protein by a Small-Molecule Compound Carrying a Naphthalene Ring.

    abstract::The ras oncogene products (H-Ras, K-Ras, and N-Ras) have been regarded as some of the most promising targets for anticancer drug discovery because their activating mutations are frequently found in human cancers. Nonetheless, molecular targeted therapy for them is currently unavailable. Here, we report the discovery o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00680

    authors: Matsumoto S,Hiraga T,Hayashi Y,Yoshikawa Y,Tsuda C,Araki M,Neya M,Shima F,Kataoka T

    更新日期:2018-09-11 00:00:00

  • Distal site aspartate is essential in the catalase activity of catalase-peroxidases.

    abstract::Structural and biochemical characterization of aspartate 152 at the distal heme side of catalase-peroxidase (KatG) from Synechocystis PCC 6803 reveals an important functional role for this residue. In the wild-type protein, the side chain carboxyl group of Asp152 is 7.8 A apart from the heme iron and is hydrogen-bonde...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026944d

    authors: Jakopitsch C,Auer M,Regelsberger G,Jantschko W,Furtmüller PG,Rüker F,Obinger C

    更新日期:2003-05-13 00:00:00

  • C-Terminal mutations in the chloroplast ATP synthase gamma subunit impair ATP synthesis and stimulate ATP hydrolysis.

    abstract::Two highly conserved amino acid residues, an arginine and a glutamine, located near the C-terminal end of the gamma subunit, form a "catch" by hydrogen bonding with residues in an anionic loop on one of the three catalytic beta subunits of the bovine mitochondrial F1-ATPase [Abrahams, J. P., Leslie, A. G., Lutter, R.,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701581y

    authors: He F,Samra HS,Johnson EA,Degner NR,McCarty RE,Richter ML

    更新日期:2008-01-15 00:00:00

  • Glycosylinositol phospholipid anchors of the scrapie and cellular prion proteins contain sialic acid.

    abstract::The only identified component of the scrapie prion is PrPSc, a glycosylinositol phospholipid (GPI)-linked protein that is derived from the cellular isoform (PrPC) by an as yet unknown posttranslational event. Analysis of the PrPSc GPI has revealed six different glycoforms, three of which are unprecedented. Two of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00136a600

    authors: Stahl N,Baldwin MA,Hecker R,Pan KM,Burlingame AL,Prusiner SB

    更新日期:1992-06-02 00:00:00

  • Kinetic evaluation of catalase and peroxygenase activities of tyrosinase.

    abstract::Tyrosinase is a copper monooxygenase containing a coupled dinuclear copper active site (type-3 copper), which catalyzes oxygenation of phenols (phenolase activity) as well as dehydrogenation of catechols (catecholase activity) using O(2) as the oxidant. In this study, catalase activity (conversion of H(2)O(2) to (1/2)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048908f

    authors: Yamazaki S,Morioka C,Itoh S

    更新日期:2004-09-14 00:00:00

  • Redefinition of the carbohydrate specificity of Erythrina corallodendron lectin based on solid-phase binding assays and molecular modeling of native and recombinant forms obtained by site-directed mutagenesis.

    abstract::Binding of the N-acetyllactosamine-specific lectin from Erythrina corallodendron (ECorL) to four glycosphingolipids has been tested using the microtiter well assay. The role of several amino acids in the binding site region was studied by combining binding assays and molecular modeling for native and recombinant forms...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962231h

    authors: Moreno E,Teneberg S,Adar R,Sharon N,Karlsson KA,Angström J

    更新日期:1997-04-15 00:00:00

  • Interaction of protein kinase C isozymes with Rho GTPases.

    abstract::Evidence is provided for direct protein-protein interactions between protein kinase C (PKC) alpha, betaI, betaII, gamma, delta, epsilon, and zeta and members of the Rho family of small GTPases. Previous investigations, based on the immunoprecipitation approach, have provided evidence consistent with a direct interacti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001654n

    authors: Slater SJ,Seiz JL,Stagliano BA,Stubbs CD

    更新日期:2001-04-10 00:00:00

  • 13C, 15N, and 31P NMR studies on 6-hydroxy-L-nicotine oxidase from Arthrobacter oxidans.

    abstract::The interaction between the apoprotein of 6-hydroxy-L-nicotine oxidase from Arthrobacter oxidans and the prosthetic group FAD has been investigated by 13C, 15N, and 31P NMR techniques. The FAD prosthetic group was selectively enriched in 13C and 15N isotopes by adding isotopically labeled riboflavin derivatives to the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00428a016

    authors: Pust S,Vervoort J,Decker K,Bacher A,Müller F

    更新日期:1989-01-24 00:00:00