Distal site aspartate is essential in the catalase activity of catalase-peroxidases.

Abstract:

:Structural and biochemical characterization of aspartate 152 at the distal heme side of catalase-peroxidase (KatG) from Synechocystis PCC 6803 reveals an important functional role for this residue. In the wild-type protein, the side chain carboxyl group of Asp152 is 7.8 A apart from the heme iron and is hydrogen-bonded to two water molecules and a KatG-specific large loop. We have prepared the site-specific variants Asp152Asn, Asp152Ser, Asp152Trp, and Pro151Ala. Exchange of Asp152 exhibited dramatic consequences on the bifunctional activity of this unique peroxidase. The turnover number of catalase activity of Asp152Asn is 2.7%, Asp152Ser 5.7%, and Asp152Trp is 0.6% of wild-type activity. By contrast, the peroxidase activity of the Asp152 variants was 2-7 times higher than that of wild-type KatG or Pro151Ala. The KatG-specific pH profile of the catalase activity was completely different in these variants and exchange of Asp152 made it possible to follow the transition of the ferric enzyme to the redox intermediate compound I by hydrogen peroxide spectroscopically and to determine the corresponding bimolecular rate constant to be 7.5 x 10(6) M(-1) s(-1) (pH 7 and 15 degrees C). The reactivity of compound I toward aromatic one-electron donors was enhanced in the Asp152 variants compared with the wild-type protein, whereas the reactivity toward hydrogen peroxide was dramatically decreased. A mechanism for the hydrogen peroxide oxidation, which is different from monofunctional catalases and involves the distal residues Trp122 and Asp152, is proposed.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Jakopitsch C,Auer M,Regelsberger G,Jantschko W,Furtmüller PG,Rüker F,Obinger C

doi

10.1021/bi026944d

subject

Has Abstract

pub_date

2003-05-13 00:00:00

pages

5292-300

issue

18

eissn

0006-2960

issn

1520-4995

journal_volume

42

pub_type

杂志文章
  • Solution structure of the chicken cysteine-rich protein, CRP1, a double-LIM protein implicated in muscle differentiation.

    abstract::The mechanism by which the contractile machinery of muscle is assembled and maintained is not well-understood. Members of the cysteine-rich protein (CRP) family have been implicated in these processes. Three vertebrate CRPs (CRP1-3) that exhibit developmentally regulated muscle-specific expression have been identified...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982036y

    authors: Yao X,Pérez-Alvarado GC,Louis HA,Pomiès P,Hatt C,Summers MF,Beckerle MC

    更新日期:1999-05-04 00:00:00

  • Formylglycinamide ribonucleotide synthetase from Escherichia coli: cloning, sequencing, overproduction, isolation, and characterization.

    abstract::The purL gene of Escherichia coli encoding the enzyme formylglycinamidine ribonucleotide (FGAM) synthetase which catalyzes the conversion of formylglycinamide ribonucleotide (FGAR), glutamine, and MgATP to FGAM, glutamate, ADP, and Pi has been cloned and sequenced. The mature protein, as deduced by the structural gene...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00432a017

    authors: Schendel FJ,Mueller E,Stubbe J,Shiau A,Smith JM

    更新日期:1989-03-21 00:00:00

  • Mutant IDH1 enhances the production of 2-hydroxyglutarate due to its kinetic mechanism.

    abstract::The human, cytosolic enzyme isocitrate dehydrogenase 1 (IDH1) reversibly converts isocitrate to α-ketoglutarate (αKG). Cancer-associated somatic mutations in IDH1 result in a loss of this normal function but a gain in a new or neomorphic ability to convert αKG to the oncometabolite 2-hydroxyglutarate (2HG). To improve...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400514k

    authors: Rendina AR,Pietrak B,Smallwood A,Zhao H,Qi H,Quinn C,Adams ND,Concha N,Duraiswami C,Thrall SH,Sweitzer S,Schwartz B

    更新日期:2013-07-02 00:00:00

  • Identification of the C=O stretching vibrations of FMN and peptide backbone by 13C-labeling of the LOV2 domain of Adiantum phytochrome3.

    abstract::Phototropin, a blue-light photoreceptor in plants, has two FMN-binding domains named LOV1 and LOV2. We previously observed temperature-dependent FTIR spectral changes in the C=O stretching region (amide-I vibrational region of the peptide backbone) for the LOV2 domain of Adiantum phytochrome3 (phy3-LOV2), suggesting p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061837v

    authors: Iwata T,Nozaki D,Sato Y,Sato K,Nishina Y,Shiga K,Tokutomi S,Kandori H

    更新日期:2006-12-26 00:00:00

  • Conformation of immunoglobulin M. 2. Nanosecond fluorescence depolarization analysis of segmental flexibility in anti-epsilon-l-dimethylamino-5-naphthalenesulfonyl-L-lysine anti-immunoglobulin from horse, pig, and shark.

    abstract::The rotational motions of immunoglobulin M (IgM) were investigated by the nanosecond fluorescence depolarization technique. The fluorophore epsilon-1-dimethylamino-5-naphthalenesulfonyl-L-lysine (DNS-lysine) was specifically bound in the combining sites of anti-DNS IgM antibodies from the horse, pig, and nurse shark. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00660a033

    authors: Holowka DA,Cathou RE

    更新日期:1976-07-27 00:00:00

  • Identification of two tetranuclear FeS clusters on the ferredoxin-type subunit of NADH:ubiquinone oxidoreductase (complex I).

    abstract::The proton-translocating NADH:ubiquinone oxidoreductase of respiratory chains (complex I) contains one flavin mononucleotide and five EPR-detectable iron-sulfur clusters as redox groups. Because of the number of conserved motifs typical for binding iron-sulfur clusters and the high content of iron and acid-labile sulf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0026977

    authors: Rasmussen T,Scheide D,Brors B,Kintscher L,Weiss H,Friedrich T

    更新日期:2001-05-22 00:00:00

  • An additional copy of the homologous region (hr1) sequence in the Autographa californica multinucleocapsid polyhedrosis virus genome promotes hyperexpression of foreign genes.

    abstract::The Autographa californica multinucleocapsid nuclear polyhedrosis virus genome contains nine homologous region (hr1, hr1a, hr2, hr2a, hr3, hr4a, hr4b, hr4c, and hr5) sequences that are thought to be involved in viral replication and activation of transcription. Our results show that the 750 bp hr1 sequence is capable ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049953q

    authors: Venkaiah B,Viswanathan P,Habib S,Hasnain SE

    更新日期:2004-06-29 00:00:00

  • Identification of two serine residues essential for agonist-induced 5-HT2A receptor desensitization.

    abstract::5-HT(2A) serotonin receptors represent the principal molecular targets for LSD-like hallucinogens and atypical antipsychotic drugs. It has been proposed that a dysregulation of 5-HT(2A) receptor-mediated signaling may contribute to the pathogenesis of schizophrenia and related diseases. A major mechanism for the atten...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035061z

    authors: Gray JA,Compton-Toth BA,Roth BL

    更新日期:2003-09-16 00:00:00

  • Essential sulfhydryl for reduced nicotinamide adenine dinucleotide binding in D-beta-hydroxybutyrate dehydrogenase.

    abstract::Chemical derivatization studies have been directed at the sulfhydryl group of D-beta-hydroxybutyrate dehydrogenase, a lipid-requiring enzyme. Reaction with N-ethylmaleimide leads to progressive and parallel loss of both enzymic activity and coenzyme binding. Both functions are lost when 1 equiv of sulfhydryl is deriva...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00564a021

    authors: Latruffe N,Brenner SC,Fleischer S

    更新日期:1980-11-11 00:00:00

  • Specific stimulation of the T7 gene 6 exonuclease by the phage T7 coded deoxyribonucleic acid binding protein.

    abstract::Bacteriophage T7 codes for a single-stranded DNA binding protein. This protein is the product of gene 2.5 and has been found previously to stimulate specifically the activity of the phage-coded DNA polymerase. We report here that the T7 DNA binding protein also stimulates the activity of the phage-coded exonuclease. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00266a042

    authors: Roberts L,Sadowski P,Wong JT

    更新日期:1982-11-09 00:00:00

  • Unique conformer selection of human growth-regulatory lectin galectin-1 for ganglioside GM1 versus bacterial toxins.

    abstract::Endogenous lectins induce effects on cell growth by binding to antennae of natural glycoconjugates. These complex carbohydrates often present more than one potential lectin-binding site in a single chain. Using the growth-regulatory interaction of the pentasaccharide of ganglioside GM(1) with homodimeric galectin-1 on...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035477c

    authors: Siebert HC,André S,Lu SY,Frank M,Kaltner H,van Kuik JA,Korchagina EY,Bovin N,Tajkhorshid E,Kaptein R,Vliegenthart JF,von der Lieth CW,Jiménez-Barbero J,Kopitz J,Gabius HJ

    更新日期:2003-12-23 00:00:00

  • Eukaryotic Catalase-Peroxidase: The Role of the Trp-Tyr-Met Adduct in Protein Stability, Substrate Accessibility, and Catalysis of Hydrogen Peroxide Dismutation.

    abstract::Recently, it was demonstrated that bifunctional catalase-peroxidases (KatGs) are found not only in archaea and bacteria but also in lower eukaryotes. Structural studies and preliminary biochemical data of the secreted KatG from the rice pathogen Magnaporthe grisea (MagKatG2) suggested both similar and novel features w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00831

    authors: Gasselhuber B,Carpena X,Graf MM,Pirker KF,Nicolussi A,Sündermann A,Hofbauer S,Zamocky M,Furtmüller PG,Jakopitsch C,Oostenbrink C,Fita I,Obinger C

    更新日期:2015-09-08 00:00:00

  • The impact of the E46K mutation on the properties of alpha-synuclein in its monomeric and oligomeric states.

    abstract::The third and most recently identified Parkinson's disease-linked variant of the neuronal protein alpha-synuclein to be identified (E46K) results in widespread brain pathology and early onset Parkinson symptoms (Zarranz et al. (2004) Ann. Neurol. 55, 164-173). Herein, we present biochemical and biophysical characteriz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7000246

    authors: Fredenburg RA,Rospigliosi C,Meray RK,Kessler JC,Lashuel HA,Eliezer D,Lansbury PT Jr

    更新日期:2007-06-19 00:00:00

  • Human secreted carbonic anhydrase: cDNA cloning, nucleotide sequence, and hybridization histochemistry.

    abstract::Complementary DNA clones coding for the human secreted carbonic anhydrase isozyme (CA VI) have been isolated and their nucleotide sequences determined. These clones identify a 1.45-kb mRNA that is present in high levels in parotid submandibular salivary glands but absent in other tissues such as the sublingual gland, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00216a035

    authors: Aldred P,Fu P,Barrett G,Penschow JD,Wright RD,Coghlan JP,Fernley RT

    更新日期:1991-01-15 00:00:00

  • Evaluation of number average length analysis in quantifying double strand breaks in genomic DNAs.

    abstract::Double strand breaks in DNA can be quantified down to very low frequencies (a few per Gigabase pair) in nanogram quantities of nonradioactive, genomic DNA by dispersing the DNAs on electrophoretic gels, digitizing them by quantitative electronic imaging, and calculating the DNA lengths by number average length analysi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0205505

    authors: Sutherland BM,Bennett PV,Georgakilas AG,Sutherland JC

    更新日期:2003-03-25 00:00:00

  • Toward engineering the stability and hemin-binding properties of microsomal cytochromes b5 into rat outer mitochondrial membrane cytochrome b5: examining the influence of residues 25 and 71.

    abstract::As part of a larger effort to engineer the stability and hemin-binding properties of microsomal (Mc) cytochromes b(5) into rat liver outer mitochondrial membrane (OM) cytochrome (cyt) b(5), several mutants of rat OM cyt b(5) were prepared to study the effect of gradual and complete elimination of two extended hydropho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026005l

    authors: Cowley AB,Altuve A,Kuchment O,Terzyan S,Zhang X,Rivera M,Benson DR

    更新日期:2002-10-01 00:00:00

  • Structural homology discloses a bifunctional structural motif at the N-termini of G alpha proteins.

    abstract::In a family of proteins, often the three-dimensional structure has been experimentally determined only for one member or a few members of the family. Homology modeling can be used to model the structures of all other members of the family and thus allow comparison of these structures. This approach was applied to hete...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026729x

    authors: Kosloff M,Elia N,Selinger Z

    更新日期:2002-12-10 00:00:00

  • Optical and magnetic resonance studies of formate binding to horse liver catalase and sperm whale myoglobin.

    abstract::The binding of formate ion, a substrate for the peroxidatic reaction of catalase, has been investigated by magnetic resonance techniques. Comparative studies of formate binding to ferric myoglobin have also been performed. The nuclear magnetic relaxation (NMR) rate of formate and water protons is enhanced by the prese...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00688a023

    authors: Hershberg RD,Chance B

    更新日期:1975-08-26 00:00:00

  • Kinetic and Bioinformatic Characterization of d-2-Hydroxyglutarate Dehydrogenase from Pseudomonas aeruginosa PAO1.

    abstract::d-2-Hydroxyglutarate dehydrogenase from Pseudomonas aeruginosa PAO1 (PaD2HGDH) catalyzes the oxidation of d-2-hydroxyglutarate to 2-ketoglutarate, which is a necessary step in the serine biosynthetic pathway. The dependence of P. aeruginosa on PaD2HGDH makes the enzyme a potential therapeutic target against P. aerugin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00832

    authors: Quaye JA,Gadda G

    更新日期:2020-12-29 00:00:00

  • NMR solution structure of a complex of calmodulin with a binding peptide of the Ca2+ pump.

    abstract::The three-dimensional structure of the complex between calmodulin (CaM) and a peptide corresponding to the N-terminal portion of the CaM-binding domain of the plasma membrane calcium pump, the peptide C20W, has been solved by heteronuclear three-dimensional nuclear magnetic resonance (NMR) spectroscopy. The structure ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9908235

    authors: Elshorst B,Hennig M,Försterling H,Diener A,Maurer M,Schulte P,Schwalbe H,Griesinger C,Krebs J,Schmid H,Vorherr T,Carafoli E

    更新日期:1999-09-21 00:00:00

  • Effects of nucleotide- and aurodox-induced changes in elongation factor Tu conformation upon its interactions with aminoacyl transfer RNA. A fluorescence study.

    abstract::The effects of GDP and of aurodox (N-methylkirromycin) on the affinity of elongation factor Tu (EF-Tu) for aminoacyl-tRNA (aa-tRNA) have been quantified spectroscopically by using Phe-tRNA(Phe)-Fl8, a functionally active analogue of Phe-tRNA(Phe) with a fluorescein dye convalently attached to the s4U-8 base. The assoc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00459a014

    authors: Dell VA,Miller DL,Johnson AE

    更新日期:1990-02-20 00:00:00

  • Modification of Rhodospirillum rubrum ribulose bisphosphate carboxylase with pyridoxal phosphate. 2. Stoichiometry and kinetics of inactivation.

    abstract::Rhodospirillum rubrum ribulose bisphosphate carboxylase contains two high affinity binding sites for pyridoxal phosphate and two catalytic sites per dimer. However, pyridoxal phosphate binding at only one site is sufficient for inactivation of both catalytic sites. In the presence of 20 mM bicarbonate, 10 mM magnesium...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00600a024

    authors: Whitman WB,Tabita FR

    更新日期:1978-04-04 00:00:00

  • Thiophosphoryl guanine nucleotide analogues inhibit the (Na+,K+)-ATPase.

    abstract::The effects of several guanine nucleotide analogues on (Na+,K+)-ATPase activity of membranes isolated from several tissues were analyzed to determine if a G-protein might be involved in the hormonal regulation of the (Na+,K+)-ATPase. Submillimolar concentrations of GTP gamma S, but not GMPPNP, inhibit rat skeletal mus...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00241a014

    authors: McGill DL

    更新日期:1991-07-09 00:00:00

  • Structural and thermodynamic characterization of the Escherichia coli RelBE toxin-antitoxin system: indication for a functional role of differential stability.

    abstract::The RelE and RelB proteins constitute the RNA interferase (toxin) and its cognate inhibitor (antitoxin) components of the Escherichia coli relBE toxin-antitoxin system. Despite the well-described functionality and physiological activity of this system in E. coli, no structural study was performed on the folding and st...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701037e

    authors: Cherny I,Overgaard M,Borch J,Bram Y,Gerdes K,Gazit E

    更新日期:2007-10-30 00:00:00

  • Cyclopropane fatty acid synthase of Escherichia coli: deduced amino acid sequence, purification, and studies of the enzyme active site.

    abstract::Cyclopropane fatty acid (CFA) synthase of Escherichia coli catalyzes a modification of the acyl chains of phospholipid bilayers. We report (i) identification of the CFA synthase protein, (ii) overproduction (> 600-fold) and purification to essential homogeneity of the enzyme, and (iii) the amino acid sequence of CFA s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00160a011

    authors: Wang AY,Grogan DW,Cronan JE Jr

    更新日期:1992-11-17 00:00:00

  • Nucleotide sequence and organization of the human S-protein gene: repeating peptide motifs in the "pexin" family and a model for their evolution.

    abstract::The S-protein/vitronectin gene was isolated from a human genomic DNA library, and its sequence of about 5.3 kilobases including the adjacent 5' and 3' flanking regions was established. Alignment of the genomic DNA nucleotide sequence and the cDNA sequence indicated that the gene consisted of eight exons and seven intr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00395a024

    authors: Jenne D,Stanley KK

    更新日期:1987-10-20 00:00:00

  • Stereochemical studies of the beta-elimination reactions at aldehydic abasic sites in DNA: endonuclease III from Escherichia coli, sodium hydroxide, and Lys-Trp-Lys.

    abstract::The DNA strand cleavage reaction catalyzed by endonuclease III from Escherichia coli (endo III) on the 3'-side of aldehyde abasic sites proceeds by a syn beta-elimination involving abstraction of the 2'-pro-S proton and formation of a trans alpha,beta-unsaturated aldose product; we previously reported the same stereoc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00218a033

    authors: Mazumder A,Gerlt JA,Absalon MJ,Stubbe J,Cunningham RP,Withka J,Bolton PH

    更新日期:1991-01-29 00:00:00

  • Receptor site for the 5'-phosphate of elongator tRNAs governs substrate selection by peptidyl-tRNA hydrolase.

    abstract::Eubacterial peptidyl-tRNA hydrolase (PTH) recycles all N-blocked aminoacyl-tRNA molecules but initiator formyl-methionyl-tRNAfMet, the acceptor helix of which is characterized by a 1-72 mismatch. Positive selection by PTH of noninitiator tRNA molecules with a full 1-72 base pair is abolished, however, upon the removal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982657r

    authors: Fromant M,Plateau P,Schmitt E,Mechulam Y,Blanquet S

    更新日期:1999-04-20 00:00:00

  • Critical side-chain interactions at a subunit interface in the Arc repressor dimer.

    abstract::In the Arc repressor dimer, the side chains of Ile37 and Val41 in alpha-helix B pack against each other and against the symmetry-related side chains of Ile37' and Val41' in alpha-helix B' to form part of the hydrophobic core and the dimer interface. Following combinatorial mutagenesis of these positions, only the wild...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00010a025

    authors: Milla ME,Sauer RT

    更新日期:1995-03-14 00:00:00

  • Reversible phosphorylation as a controlling factor for sustaining calcium oscillations in HeLa cells: Involvement of calmodulin-dependent kinase II and a calyculin A-inhibitable phosphatase.

    abstract::The role of reversible phosphorylation in histamine-induced Ca2+ oscillations in HeLa cells has been investigated by using various activators and inhibitors of protein kinases and phosphatases. Electroporation was employed to introduce impermeable materials into single cells, which proved to be a useful and convenient...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952471h

    authors: Zhu DM,Tekle E,Chock PB,Huang CY

    更新日期:1996-06-04 00:00:00