Acyclic guanosine analogs inhibit DNA polymerases alpha, delta, and epsilon with very different potencies and have unique mechanisms of action.

Abstract:

:Acyclovir triphosphate, ganciclovir triphosphate and penciclovir triphosphate inhibited DNA polymerases alpha, delta, and epsilon. Each triphosphate preferentially inhibited pol delta, although ganciclovir triphosphate was the most impressive of the three; the Ki for inhibition of pol delta was 2 microM (competitive with dGTP), while the Kis for inhibition of pol alpha and epsilon were 80 and 140 microM, respectively. Each of the compounds was polymerized by pol alpha, delta, and epsilon. Incorporation of acyclovir triphosphate resulted in immediate chain termination, whereas incorporation of ganciclovir triphosphate often allowed polymerization of additional dNTPs. Interestingly, chain termination most often occurred after polymerization of just one additional dNTP onto the ganciclovir monophosphate. All three compounds were very weak inhibitors of DNA primase. Acyclovir triphosphate, however, was a unique inhibitor of the pol alpha-catalyzed elongation of primase-synthesized primers. Immediately after DNA primase synthesized a primer, pol alpha frequently incorporated acyclovir triphosphate with consequent chain termination. If, however, pol alpha did not immediately polymerize acyclovir triphosphate onto the primase-synthesized primer, further dNTPs were readily added and acyclovir triphosphate was incorporated much less frequently.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Ilsley DD,Lee SH,Miller WH,Kuchta RD

doi

10.1021/bi00008a014

subject

Has Abstract

pub_date

1995-02-28 00:00:00

pages

2504-10

issue

8

eissn

0006-2960

issn

1520-4995

journal_volume

34

pub_type

杂志文章
  • Light-harvesting complex 1 stabilizes P+QB- charge separation in reaction centers of Rhodobacter sphaeroides.

    abstract::The kinetics of charge recombination following photoexcitation by a laser pulse have been analyzed in the reaction center-light harvesting complex 1 (RC-LH1) purified from the photosynthetic bacterium Rhodobacter sphaeroides. In RC-LH1 core complexes isolated from photosynthetically grown cells P(+)Q(B)(-) recombines ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048629s

    authors: Francia F,Dezi M,Rebecchi A,Mallardi A,Palazzo G,Melandri BA,Venturoli G

    更新日期:2004-11-09 00:00:00

  • Chromatin-bound protease: (3H)diisopropyl fluorophosphate labeling patterns of chromatin.

    abstract::The nuclei and chromatin of rat liver contain three major proteins reacting with diisopropyl fluorophosphate (DFP). The molecular weights of the three proteins determined by gel filtration in the presence of sodium dodecyl sulfate and sodium dodecyl sulfate-polyacrylamide gel electrophoresis are 70000, 60000, and 250...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00657a019

    authors: Carter DB,Efird PH,Chae CB

    更新日期:1976-06-15 00:00:00

  • FtsZ filament dynamics at steady state: subunit exchange with and without nucleotide hydrolysis.

    abstract::We have measured three aspects of FtsZ filament dynamics at steady state: rates of GTP hydrolysis, subunit exchange between protofilaments, and disassembly induced by dilution or excess GDP. All three reactions were slowed with an increase in the potassium concentration from 100 to 500 mM, via replacement of potassium...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8022653

    authors: Chen Y,Erickson HP

    更新日期:2009-07-21 00:00:00

  • Amino acid 305 determines catalytic center accessibility in CYP3A4.

    abstract::Site-directed mutagenesis has been used to replace alanine 305 with phenylalanine (A305F) and serine (A305S) in the active site of cytochrome P450 3A4 (CYP3A4). Enzyme kinetics for diazepam, erythromycin, nifedipine, and testosterone metabolism have been determined for both mutants and wild-type CYP3A4. The A305F muta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992372u

    authors: Fowler SM,Riley RJ,Pritchard MP,Sutcliffe MJ,Friedberg T,Wolf CR

    更新日期:2000-04-18 00:00:00

  • Role of mitogen-activated protein kinases in S-nitrosoglutathione-induced macrophage apoptosis.

    abstract::The inflammatory mediator nitric oxide (NO*) promotes apoptotic cell death based on morphological evidence, accumulation of the tumor suppressor p53, caspase-3 activation, and DNA fragmentation in RAW 264.7 macrophages. Since nitrosothiols may actually be the predominant form of biologically active NO* in vivo, we use...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982292a

    authors: Callsen D,Brüne B

    更新日期:1999-02-23 00:00:00

  • High resolution solution structure of the 1.3S subunit of transcarboxylase from Propionibacterium shermanii.

    abstract::Transcarboxylase (TC) from Propionibacterium shermanii, a biotin-dependent enzyme, catalyzes the transfer of a carboxyl group from methylmalonyl-CoA to pyruvate to form propionyl-CoA and oxalacetate. Within the multi-subunit enzyme complex, the 1.3S subunit functions as the carboxyl group carrier and also binds the ot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9925367

    authors: Reddy DV,Shenoy BC,Carey PR,Sönnichsen FD

    更新日期:2000-03-14 00:00:00

  • Domain organization and a protease-sensitive loop in eukaryotic ornithine decarboxylase.

    abstract::Trypanosoma brucei ornithine decarboxylase was reconstituted by coexpression of two polypeptides corresponding to residues 1-305 and residues 306-425 in Escherichia coli. The two peptides were coexpressed, at wild-type levels, from a single transcriptional unit that was separated by a 15-nucleotide untranslated region...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00041a021

    authors: Osterman AL,Lueder DV,Quick M,Myers D,Canagarajah BJ,Phillips MA

    更新日期:1995-10-17 00:00:00

  • Revealing the allosterome: systematic identification of metabolite-protein interactions.

    abstract::Small molecule allostery modifies protein function but is not easily discovered. We introduce mass spectrometry integrated with equilibrium dialysis for the discovery of allostery systematically (MIDAS), a method for identifying physiologically relevant, low-affinity metabolite-protein interactions using unmodified pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201313s

    authors: Orsak T,Smith TL,Eckert D,Lindsley JE,Borges CR,Rutter J

    更新日期:2012-01-10 00:00:00

  • Barbiturate inhibition of GLUT-1 mediated hexose transport in human erythrocytes exhibits substrate dependence for equilibrium exchange but not unidirectional sugar flux.

    abstract::Barbiturates inhibit GLUT-1 mediated hexose transport both in vivo [Gjedde & Rasmussen (1980) J. Neurochem. 35, 1382-1387; Otsuka et al. (1991) Am. J. Physiol. 261, R265-R275] and in vitro [Honkanen et al. (1995) Biochemistry 34, 535-544]. In the present study, the mechanism by which barbiturates inhibit GLUT-1 mediat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962050f

    authors: el-Barbary A,Fenstermacher JD,Haspel HC

    更新日期:1996-12-03 00:00:00

  • Structural Basis of Substrate Recognition by Aldehyde Dehydrogenase 7A1.

    abstract::Aldehyde dehydrogenase 7A1 (ALDH7A1) is part of lysine catabolism and catalyzes the NAD(+)-dependent oxidation of α-aminoadipate semialdehyde to α-aminoadipate. Herein, we describe a structural study of human ALDH7A1 focused on substrate recognition. Five crystal structures and small-angle X-ray scattering data are re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00754

    authors: Luo M,Tanner JJ

    更新日期:2015-09-08 00:00:00

  • Interactions of mycobacterial glycopeptidolipids with membranes: influence of carbohydrate on induced alterations.

    abstract::Glycopeptidolipids (GPLs) are specific constituents of mycobacteria known as opportunistic pathogens. The influence of the carbohydrate moiety on GPL-induced membrane alterations was examined with GPLs bearing 1-5 sugar residues (GPL-1 to GPL-5) and a sulfated GPL (S-GPL-2). GPLs decreased the ADP/O ratio and increase...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00189a006

    authors: Lopez-Marin LM,Quesada D,Lakhdar-Ghazal F,Tocanne JF,Lanéelle G

    更新日期:1994-06-14 00:00:00

  • Mutant IDH1 enhances the production of 2-hydroxyglutarate due to its kinetic mechanism.

    abstract::The human, cytosolic enzyme isocitrate dehydrogenase 1 (IDH1) reversibly converts isocitrate to α-ketoglutarate (αKG). Cancer-associated somatic mutations in IDH1 result in a loss of this normal function but a gain in a new or neomorphic ability to convert αKG to the oncometabolite 2-hydroxyglutarate (2HG). To improve...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400514k

    authors: Rendina AR,Pietrak B,Smallwood A,Zhao H,Qi H,Quinn C,Adams ND,Concha N,Duraiswami C,Thrall SH,Sweitzer S,Schwartz B

    更新日期:2013-07-02 00:00:00

  • Biogenesis of the secretory granule: chromogranin A coiled-coil structure results in unusual physical properties and suggests a mechanism for granule core condensation.

    abstract::The secretory pro-hormone chromogranin A (CHGA) is densely packed into storage granules along with catecholamines, playing a catalytic role in granule biogenesis. 3-Dimensional structural data on CHGA are lacking. We found a superfamily structural homology for CHGA in the tropomyosin family of alpha-helical coiled-coi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700704r

    authors: Mosley CA,Taupenot L,Biswas N,Taulane JP,Olson NH,Vaingankar SM,Wen G,Schork NJ,Ziegler MG,Mahata SK,O'Connor DT

    更新日期:2007-09-25 00:00:00

  • Rapid intrachain binding of histidine-26 and histidine-33 to heme in unfolded ferrocytochrome C.

    abstract::Time-resolved spectroscopic studies of unfolded horse iron(II) cytochrome c have suggested that the imidazole side chains of His26 and His33 bind transiently to the heme iron on microsecond time scales, after photodissociation of a carbon monoxide ligand from the heme. Our studies of four variants of cytochrome c (hor...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011371a

    authors: Hagen SJ,Latypov RF,Dolgikh DA,Roder H

    更新日期:2002-01-29 00:00:00

  • Time-resolved fluorescence investigations of the interaction of the voltage-sensitive probe RH421 with lipid membranes and proteins.

    abstract::Fluorescence lifetimes and fluorescence anisotropy decays of the voltage-sensitive styryl-pyridinium dye RH421 have been measured in the presence of dimyristoylphosphatidylcholine vesicles, the water soluble enzyme ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco), and Na+,K(+)-ATPase-containing membrane fragm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00037a015

    authors: Visser NV,van Hoek A,Visser AJ,Frank J,Apell HJ,Clarke RJ

    更新日期:1995-09-19 00:00:00

  • The Inflection Point Hypothesis: The Relationship between the Temperature Dependence of Enzyme-Catalyzed Reaction Rates and Microbial Growth Rates.

    abstract::The temperature dependence of biological rates at different scales (from individual enzymes to isolated organisms to ecosystem processes such as soil respiration and photosynthesis) is the subject of much historical and contemporary research. The precise relationship between the temperature dependence of enzyme rates ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00530

    authors: Prentice EJ,Hicks J,Ballerstedt H,Blank LM,Liáng LNL,Schipper LA,Arcus VL

    更新日期:2020-09-29 00:00:00

  • Characteristics of the isolated apical plasmalemma and intracellular tubulovesicles of the gastric acid secreting cells: demonstration of secretagogue-induced membrane mobilization.

    abstract::Separation of the gradient-purified gastric microsome into two membrane subfractions of distinct enzymatic and phospholipid composition has been achieved by mild SDS (0.033% w/v) treatment followed by sucrose gradient centrifugation of the pig and rabbit gastric microsomes. While the high-density membranes had all of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00425a013

    authors: Ray TK,Das PK,Nandi J,Banerjee A,Bandopadhyay S

    更新日期:1988-12-13 00:00:00

  • Primary quinone (QA) binding site of bacterial photosynthetic reaction centers: mutations at residue M265 probed by FTIR spectroscopy.

    abstract::In the primary quinone (Q(A)) binding site of Rb. sphaeroides reaction centers (RCs), isoleucine M265 is in extensive van der Waals contact with the ubiquinone headgroup. Substitution of threonine or serine for this residue (mutants M265IT and M265IS), but not valine (mutant M265IV), lowers the redox midpoint potentia...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026958j

    authors: Wells TA,Takahashi E,Wraight CA

    更新日期:2003-04-15 00:00:00

  • Inhibition of protein synthesis in vesicular stomatitis virus infected Chinese hamster ovary cells: role of virus mRNA-ribonucleoprotein particle.

    abstract::Although host protein synthesis is preferentially inhibited, there is a steady decline in the ability of Chinese hamster ovary (CHO) cells infected with vesicular stomatitis virus (VSV) to synthesize both host and viral proteins. We previously reported finding an mRNA-ribonucleoprotein particle (mRNP) that contained a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a014

    authors: Rosen CA,Siekierka J,Ennis HL,Cohen PS

    更新日期:1984-05-22 00:00:00

  • Structure and function of DNA photolyase.

    abstract::Cyclobutane pyrimidine dimers (Pyr < > Pyr) are the major DNA photoproducts induced by the UV component of solar radiation. Photoreactivating enzyme (DNA photolyase) repairs DNA by utilizing the energy of visible light to break the cyclobutane ring of the dimer. Photolyases are monomeric proteins of 50-60 kDa with sto...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi00167a001

    authors: Sancar A

    更新日期:1994-01-11 00:00:00

  • The androgen receptor T877A mutant recruits LXXLL and FXXLF peptides differently than wild-type androgen receptor in a time-resolved fluorescence resonance energy transfer assay.

    abstract::The interactions of the ligand binding domain (LBD) of androgen receptor (AR) and the AR T877A mutant, found in prostate cancer, with peptides from coactivator and corepressor proteins or random phage display peptides were investigated using in vitro time-resolved fluorescence resonance energy transfer (TR-FRET). Inte...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061321b

    authors: Ozers MS,Marks BD,Gowda K,Kupcho KR,Ervin KM,De Rosier T,Qadir N,Eliason HC,Riddle SM,Shekhani MS

    更新日期:2007-01-23 00:00:00

  • "Dilysine trigger" in transferrins probed by mutagenesis of lactoferrin: crystal structures of the R210G, R210E, and R210L mutants of human lactoferrin.

    abstract::The mammalian iron-binding proteins lactoferrin (Lf) and transferrin (Tf) bind iron very tightly, but reversibly. Despite homologous structures and essentially identical iron binding sites, Tf begins to release iron at pH 6.0, whereas Lf retains iron to pH approximately 3.5. This difference in iron retention gives the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020443a

    authors: Peterson NA,Arcus VL,Anderson BF,Tweedie JW,Jameson GB,Baker EN

    更新日期:2002-12-03 00:00:00

  • Streptokinase binds preferentially to the extended conformation of plasminogen through lysine binding site and catalytic domain interactions.

    abstract::Binding of streptokinase (SK) to plasminogen (Pg) activates the zymogen conformationally and initiates its conversion into the fibrinolytic proteinase, plasmin (Pm). Equilibrium binding studies of SK interactions with a homologous series of catalytic site-labeled fluorescent Pg and Pm analogues were performed to resol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000594i

    authors: Boxrud PD,Bock PE

    更新日期:2000-11-14 00:00:00

  • Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena.

    abstract::We have used nucleoside phosphorothioates (NTP alpha S) and a substitution-interference method to identify phosphate oxygens that appear to be important to guanosine cofactor addition in the self-splicing group I intron from Tetrahymena thermophila. For the majority of these phosphate oxygens, however, the effect of N...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00068a001

    authors: Christian EL,Yarus M

    更新日期:1993-05-04 00:00:00

  • Signal transduction mechanism of a peptide mimetic of interferon-gamma.

    abstract::The C-terminus of interferon-gamma (IFNgamma) contains a nuclear localization sequence (NLS) required for the activation and nuclear translocation of the transcription factor STAT1alpha and induction of IFNgamma-activated genes. On the basis of this and other studies, we developed a peptide mimetic of IFNgamma that po...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036213t

    authors: Subramaniam PS,Flowers LO,Haider SM,Johnson HM

    更新日期:2004-05-11 00:00:00

  • Structure-sensitive RNA footprinting of yeast nuclear ribonuclease P.

    abstract::Several enzymatic and chemical reagents were used to probe the secondary structure of Saccharomyces cerevisiae nuclear RNase P RNA in the presence and absence of its protein components. Double-stranded regions were detected with RNase V1 and single-stranded regions with RNase ONE (Escherichia coli RNase I). Nucleotide...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00173a022

    authors: Tranguch AJ,Kindelberger DW,Rohlman CE,Lee JY,Engelke DR

    更新日期:1994-02-22 00:00:00

  • Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: importance of residues in the orotate binding site.

    abstract::The reaction catalyzed by orotidine 5'-monophosphate decarboxylase (OMPDC) is accompanied by exceptional values for rate enhancement (k(cat)/k(non) = 7.1 × 10(16)) and catalytic proficiency [(k(cat)/K(M))/k(non) = 4.8 × 10(22) M(-1)]. Although a stabilized vinyl carbanion/carbene intermediate is located on the reactio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2012355

    authors: Iiams V,Desai BJ,Fedorov AA,Fedorov EV,Almo SC,Gerlt JA

    更新日期:2011-10-04 00:00:00

  • The Osmolyte TMAO Modulates Protein Folding Cooperativity by Altering Global Protein Stability.

    abstract::The folding of many globular proteins from the unfolded (U) to the native (N) state appears to be describable by a two-state N ↔ U model, which has led to the general belief that protein folding occurs in a highly cooperative manner. One reason for the widespread belief in "two-state folding" is that protein folding r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00698

    authors: Jethva PN,Udgaonkar JB

    更新日期:2018-10-09 00:00:00

  • Primary structure of Escherichia coli ribosomal protein L31.

    abstract::Protein L31 from the 50S ribosomal subunit of Escherichia coli was manually sequenced by the dansyl-Edman method. Owing to the availability of only small quantities of purified L31, sequencing methods were scaled down such that the entire primary structure could be determined with 700 microgram of protein. The techniq...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00596a020

    authors: Brosius J

    更新日期:1978-02-07 00:00:00

  • Dissociation of the α-subunit Calf-2 domain and the β-subunit I-EGF4 domain in integrin activation and signaling.

    abstract::Integrin conformational changes mediate integrin activation and signaling triggered by intracellular molecules or extracellular ligands. Even though it is known that αβ transmembrane domain separation is required for integrin signaling, it is still not clear how this signal is transmitted from the transmembrane domain...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101462h

    authors: Wang W,Fu G,Luo BH

    更新日期:2010-11-30 00:00:00