Abstract:
:Time-resolved spectroscopic studies of unfolded horse iron(II) cytochrome c have suggested that the imidazole side chains of His26 and His33 bind transiently to the heme iron on microsecond time scales, after photodissociation of a carbon monoxide ligand from the heme. Our studies of four variants of cytochrome c (horse wild type, horse H33N, horse H33N/H26Q, and tuna wild type), unfolded in guanidine hydrochloride at pH 6.5, demonstrate that these side chains are responsible for the observed microsecond spectral changes. As His33 and then His26 are eliminated from the horse wild-type sequence, transient optical absorption spectra show systematic suppression of a rapid (approximately 10-100 micros) Soret absorbance change that follows photolysis of CO. Transient binding of these histidine side chains to the heme therefore generates one of the fast kinetic phases observed in previous photochemically triggered spectroscopic studies of dynamics in unfolded iron(II) cytochrome c. Furthermore, both His33 and His26 appear to contribute to a similar extent in these early kinetics. Thus, the stiffness of the polypeptide chain creates a deviation from Gaussian chain behavior by impeding, although not preventing, the formation of short (<10 peptide bonds) intrachain loops around the heme group.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Hagen SJ,Latypov RF,Dolgikh DA,Roder Hdoi
10.1021/bi011371asubject
Has Abstractpub_date
2002-01-29 00:00:00pages
1372-80issue
4eissn
0006-2960issn
1520-4995pii
bi011371ajournal_volume
41pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::Fragment-based approaches to finding novel small molecules that bind to proteins are now firmly established in drug discovery and chemical biology. Initially developed primarily in a few centers in the biotech and pharma industry, this methodology has now been adopted widely in both the pharmaceutical industry and aca...
journal_title:Biochemistry
pub_type: 杂志文章,评审
doi:10.1021/bi3005126
更新日期:2012-06-26 00:00:00
abstract::The BARD1 N-terminal RING domain binds BRCA1 while the BARD1 C-terminal ankyrin and tandem BRCT repeat domains bind CstF-50 to modulate mRNA processing and RNAP II stability in response to DNA damage. Here we characterize the BARD1 structural biochemistry responsible for CstF-50 binding. The crystal structure of the B...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi801115g
更新日期:2008-11-04 00:00:00
abstract::Recently, we synthesized the first individual β,γ-CHX-dGTP diastereomers [(R)- or (S)-CHX, where X is F or Cl] and determined their structures in ternary complexes with DNA polymerase β (pol β). We now report stereospecificity by pol β on the mixed β,γ-CHX diastereomer pairs using nuclear magnetic resonance and on the...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi3010335
更新日期:2012-10-30 00:00:00
abstract::Illumination of envelope vesicles prepared from Halobacterium halobium cells causes translocation of protons from inside to outside, due to the light-induced cycling of bacteriorhodopsin. This process results in a pH gradient across the membranes, an electrical potential, and the movements of K+ and Na+. The electrica...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00655a017
更新日期:1976-05-18 00:00:00
abstract::Nuclear magnetic resonance (NMR) (15)N relaxation methods have been used to characterize the backbone dynamics of the N-terminal core domain of the HIV-1 capsid protein (CA(151)). The domain, which has an unusually flat, triangular shape, tumbles in solution at 28 degrees C with an effective rotational correlation tim...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi990991x
更新日期:1999-08-10 00:00:00
abstract::The two most basic charge isomers of myelin basic protein (BP), components 1 and 2 (C1 and C2), which presumably differ in the degree of deamidation, were purified from bovine BP by cation-exchange chromatography. Two additional specific types of posttranslational modifications were introduced into the purified isomer...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00340a032
更新日期:1985-09-10 00:00:00
abstract::The influence of membrane pH gradients on the transbilayer distribution of some common phospholipids has been investigated. We demonstrate that the transbilayer equilibrium of the acidic phospholipids egg phosphatidylglycerol (EPG) and egg phosphatidic acid (EPA) can be manipulated by membrane proton gradients, wherea...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00436a009
更新日期:1989-05-16 00:00:00
abstract::Expression of the Tn21 mercury-resistance (mer) locus is controlled by the merR gene product, which represses mer structural gene (merTPCAD) transcription in the absence of mercuric ion [Hg(II)] and activates it in the presence of Hg(II). In vivo DNA methylation of the mer regulatory region (merOP) shows that, with or...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00493a011
更新日期:1990-10-16 00:00:00
abstract::SecA-lipid interactions are believed to be important for the translocation of precursor proteins across the inner membrane of Escherichia coli [Lill, R., Dowhan, W., & Wickner, W. (1990) Cell 60, 271-280]. SecA insertion into the phospholipid bilayer could a role in this process. We investigated this possibility by st...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00119a021
更新日期:1992-02-04 00:00:00
abstract::We characterized endocytosis of iron-saturated (holo) and iron-depleted (apo) 125I-labeled bovine lactoferrin (Lf) by isolated rat hepatocytes. Hepatocytes ingested both Lf forms--determined by EGTA/dextran sulfate removal of surface-bound Lf--at maximal endocytic rates of 1.85 and 1.52 fmol cell-1 min-1 for 125I-apo-...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00212a046
更新日期:1993-12-14 00:00:00
abstract::The N-type voltage-gated Ca(2+) channel CaV2.2 is one of the important targets for pain management. ω-Conotoxins isolated from venoms of cone snails, which specifically inhibit CaV2.2, are promising scaffolds for novel analgesics. The inhibitory action of ω-conotoxins on CaV2.2 has been examined experimentally, but th...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi4003327
更新日期:2013-05-28 00:00:00
abstract::The micellar properties of mixed, bovine gangliosides and purified galactosyl-N-acetylacetylgalactosaminyl (N-acetylneuraminyl) galactosylglucosylceramide were studied by gel filtration, equilibrium dialysis, and band and boundary centrifugation in sucrose gradients. The dissociation of micelles is very slow (days) in...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00573a028
更新日期:1979-03-20 00:00:00
abstract::The vast majority of characterized oxygenases use bound cofactors to activate molecular oxygen to carry out oxidation chemistry. Here, we show that an enzyme of unknown activity, RhCC from Rhodococcus jostii RHA1, functions as an oxygenase, using 4-hydroxyphenylenolpyruvate as a substrate. This unique and complex reac...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi501200j
更新日期:2015-02-10 00:00:00
abstract::We have found a new class of inhibitors of the bacterial bioluminescence reaction, the N,N-diphenylalkylamines and acids. We have studied the action of one of these compounds 2,2-diphenylpropylamine. The amine was competitive with the long-chain aliphatic aldehyde substrate (Ki congruent to 0.1 mM) but caused an incre...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00522a027
更新日期:1981-09-15 00:00:00
abstract::Treatment of murine leukemia virus reverse transcriptase (MuLV RT) with potassium ferrate, an oxidizing agent known to oxidize amino acids involved in phosphate binding domains of proteins, results in the irreversible inactivation of both the DNA polymerase and the RNase H activities. Significant protection from ferra...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00247a015
更新日期:1991-08-20 00:00:00
abstract::The structure of MtrA, an essential gene product for the human pathogen Mycobacterium tuberculosis, has been solved to a resolution of 2.1 A. MtrA is a member of the OmpR/PhoB family of response regulators and represents the fourth family member for which a structure of the protein in its inactive state has been deter...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi602546q
更新日期:2007-06-12 00:00:00
abstract::X-ray absorption spectroscopy has been used to investigate binding of selenohomocysteine to cobalamin-independent (MetE) and cobalamin-dependent (MetH) methionine synthase enzymes of Escherichia coli. We have shown previously [Peariso et al. (1998) J. Am. Chem. Soc. 120, 8410-8416] that the Zn sites in both enzymes sh...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi001711c
更新日期:2001-01-30 00:00:00
abstract::Steady-state and transient-state analysis of Coprinus cinereus peroxidase, CIP (identical to Arthromyces ramosus peroxidase), was used to characterize the kinetics of the three fundamental steps in heme peroxidase catalysis: compound I (cpd I) formation, cpd I reduction, and compound II (cpd II) reduction. The rate co...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi970387r
更新日期:1997-08-05 00:00:00
abstract::The stable tyrosine radical YD. (tyrosine 160 in the D2 polypeptide) in photosystem II (PSII) exhibits nonexponential electron spin-lattice relaxation transients at low temperature. As previously reported, the tetranuclear Mn complex in PSII significantly enhances the spin-lattice relaxation of YD.. However, in Mn-dep...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00117a033
更新日期:1992-01-21 00:00:00
abstract::GGAs are a family of vesicle-coating regulatory proteins that function in intracellular protein transport. A GGA molecule contains four domains, each mediating interaction with other proteins in carrying out intracellular transport. The GAT domain of GGAs has been identified as the structural entity that binds membran...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi034334n
更新日期:2003-06-03 00:00:00
abstract::Introduction of specific structural probes into substrate binding sites of Escherichia coli glutamine synthetase is now possible. Various analogues of ATP substituted with an amino or sulfhydryl moiety at the 6- or 8-position of the purine ring have been found to substitute for ATP in the autoinactivation reaction of ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00349a020
更新日期:1986-01-14 00:00:00
abstract::A full-length cDNA for dopamine beta-monooxygenase (D beta M) from bovine adrenal glands has been cloned and sequenced. The soluble and membrane-derived forms of D beta M have also been sequenced from their N-termini. While the observed sequences for the soluble protein correspond to those previously reported [Joh, T....
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00452a026
更新日期:1989-12-26 00:00:00
abstract::The binding of ethidium bromide to the self-complementary deoxytetranucleotides containing guanine and cytosine bases has been studied by circular dichroism, visible absorption, and fluorescence spectroscopies. The circular dichroism spectrum of each of the four deoxytetranucleotides was measured and compared to the s...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00616a002
更新日期:1978-11-14 00:00:00
abstract::Complex type N-glycosides of commercial bovine fetuin preparations from pooled fetal calf serum have been shown to contain comparable amounts of Gal4,4,4TRI (see structure A below) and Gal4,4,3TRI (structure B) as major asialo-structures. To investigate whether there is a clear genetic specificity for synthesis of the...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00135a024
更新日期:1992-05-26 00:00:00
abstract::The primary structure of a multifunctional protein, the large alpha-subunit of the Escherichia coli fatty acid oxidation complex, was determined by sequencing the fadB region of the fadBA operon. The amino-terminal sequence of this protein had been established by Edman degradation. The transcription start site of the ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00241a023
更新日期:1991-07-09 00:00:00
abstract::A high-resolution solution conformation of a novel conotoxin, [Pro 7,13] alpha A-conotoxin PIVA, GCCGSYPNAACHPCSCKDROSYCGQ-NH2, has been determined by two-dimensional 1H NMR methods and distance geometry calculations. The total of 324 NOE-derived interproton distance restraints including 33 long-range NOE restraints a...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi962301k
更新日期:1997-02-18 00:00:00
abstract::The dimeric nature of the HIV protease has been exploited to devise a novel mode of inhibiting the enzyme. The use of defective monomers or nonidentical subunits to exchange with wild-type homodimers produces catalytically defective heterodimers. Incubation of the HIV1 or HIV2 protease with a 4-fold molar excess of an...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00215a016
更新日期:1991-01-08 00:00:00
abstract::Different sites of the tRNA molecule influence the activity of the elongation factor Tu (EF-Tu) center for GTP hydrolysis [Parlato, G., Pizzano, R., Picone, D., Guesnet, J., Fasano, O., & Parmeggiani, A. (1983) J. Biol. Chem. 258, 995-1000]. Continuing these studies, we have investigated some aspects of (a) the effect...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00427a044
更新日期:1989-01-10 00:00:00
abstract::Previous studies of the low molecular mass family 11 xylanase from Bacillus circulans show that the ionization state of the nucleophile (Glu78, pK(a) 4.6) and the acid/base catalyst (Glu172, pK(a) 6.7) gives rise to its pH-dependent activity profile. Inspection of the crystal structure of BCX reveals that Glu78 and Gl...
journal_title:Biochemistry
pub_type: 杂志文章
doi:
更新日期:2001-08-28 00:00:00
abstract::We report here that the DNA strand scission by dynemicin A is not only sequence-specific but also conformation-specific. The salt-induced B----Z conformational transition dramatically enhanced the cleavage by dynemicin A in a B-Z junction region. By contrast, the bleomycin-Fe(II) complex, the elsamicin A-Fe(II) comple...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00144a019
更新日期:1992-07-28 00:00:00