pH dependence and structural interpretation of the reactions of Coprinus cinereus peroxidase with hydrogen peroxide, ferulic acid, and 2,2'-azinobis.

Abstract:

:Steady-state and transient-state analysis of Coprinus cinereus peroxidase, CIP (identical to Arthromyces ramosus peroxidase), was used to characterize the kinetics of the three fundamental steps in heme peroxidase catalysis: compound I (cpd I) formation, cpd I reduction, and compound II (cpd II) reduction. The rate constant k1 for cpd I formation determined by transient-state analysis is (9.9 +/- 0.6) x 10(6) M-1 s-1. The k1 determined by steady-state analysis is (8.8 +/- 0.6) x 10(6) M-1 s-1 in the presence of ferulic acid and (6.7 +/- 0.2) x 10(6) M-1 s-1 in the presence of ABTS. The value of k1 is constant from pH 6 to 11. However, at low pH the value of k1 decreases, corresponding to titration of an enzyme group with a pKa of 5.0. Titration of this group is also detected from cyanide-binding kinetics. Furthermore, titration of this group is linked with marked spectroscopic changes unique to CIP. We ascribe these changes to protonation of proximal His183. A very low pKa is proposed for distal His55 in the resting state of CIP. The rate constants, k2 for cpd I and k3 for cpd II reduction, are very large for both ferulic acid and 2,2'-azinobis(3-ethylbenzthiazoline-6-sulfonic acid) (ABTS). For ferulic acid, transient-state kinetic analysis shows that the values of k2 and k3 are identical at pH 5-6, and the ratio k2/k3 increases to 10 at pH 10. The similar magnitude of k2 and k3 is unusual for a peroxidase. Both k2 and k3 decrease with increasing pH, and both are influenced by two ionizations: one with a pKa value near 7, assumed to reflect the protonation of His55; and the other with pKa of 9.0 +/- 0.7 for k2 and 8.8 +/- 0.4 for k3, perhaps reflecting the phenol-linked deprotonation of ferulic acid. Steady-state analysis at pH 7.0 gave k2k3/(k2 + k3) = (2.2 +/- 0.1) x 10(7) M-1 s-1 for ferulic acid, and (2.0 +/- 0.7) x 10(7) M-1 s-1 for ABTS and revealed a unimolecular step with ku = 1500 s-1, ascribed to slow ABTS radical product release. From transient-state results at pH 7, the values of k2 and k3 were found to be identical also for ABTS. A mechanism for cpd I and II reduction involving distal histidine and arginine is proposed.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Abelskov AK,Smith AT,Rasmussen CB,Dunford HB,Welinder KG

doi

10.1021/bi970387r

subject

Has Abstract

pub_date

1997-08-05 00:00:00

pages

9453-63

issue

31

eissn

0006-2960

issn

1520-4995

pii

bi970387r

journal_volume

36

pub_type

杂志文章
  • Determinants of high-affinity DNA binding by the glucocorticoid receptor: evaluation of receptor domains outside the DNA-binding domain.

    abstract::In this study, we have investigated the influence of regions outside the DNA-binding domain of the human glucocorticoid receptor on high-affinity DNA binding. We find that the DNA-binding domain shows a 10-fold lower affinity for a palindromic DNA-binding site than the intact receptor. The N-terminal part of the recep...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00152a047

    authors: Dahlman-Wright K,Wright AP,Gustafsson JA

    更新日期:1992-09-22 00:00:00

  • Inhibition of InhA, the enoyl reductase from Mycobacterium tuberculosis, by triclosan and isoniazid.

    abstract::Structural and genetic studies indicate that the antibacterial compound triclosan, an additive in many personal care products, is an inhibitor of EnvM, the enoyl reductase from Escherichia coli. Here we show that triclosan specifically inhibits InhA, the enoyl reductase from Mycobacterium tuberculosis and a target for...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0008940

    authors: Parikh SL,Xiao G,Tonge PJ

    更新日期:2000-07-04 00:00:00

  • Ultraviolet resonance Raman spectra of insulin and alpha-lactalbumin with 218- and 200-nm laser excitation.

    abstract::Ultraviolet resonance Raman (RR) spectra, with 200- and 218-nm excitation from a H2-shifted quadrupled Nd:YAG laser, are reported for insulin and alpha-lactalbumin in dilute aqueous solution, at pH values known to produce differences in the exposure of the aromatic residues to solvent. At 200 nm, the spectra are domin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00329a009

    authors: Rava RP,Spiro TG

    更新日期:1985-04-09 00:00:00

  • Utilization of Substrate Intrinsic Binding Energy for Conformational Change and Catalytic Function in Phosphoenolpyruvate Carboxykinase.

    abstract::Phosphoenolpyruvate carboxykinase (PEPCK) is an essential metabolic enzyme operating in the gluconeogenesis and glyceroneogenesis pathways. Previous work has demonstrated that the enzyme cycles between a catalytically inactive open state and a catalytically active closed state. The transition of the enzyme between the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01215

    authors: Johnson TA,Mcleod MJ,Holyoak T

    更新日期:2016-01-26 00:00:00

  • Biochemical basis for the functional switch that regulates hepatocyte growth factor receptor tyrosine kinase activation.

    abstract::Ligand-induced dimerization of receptor tyrosine kinases (RTKs) modulates a system of linked biochemical reactions, sharply switching the RTK from a quiescent state to an active state that becomes phosphorylated and triggers intracellular signaling pathways. To improve our understanding of this molecular switch, we de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701892f

    authors: Sheth PR,Hays JL,Elferink LA,Watowich SJ

    更新日期:2008-04-01 00:00:00

  • Structural, Functional, and Dynamical Responses of a Protein in a Restricted Environment Imposed by Macromolecular Crowding.

    abstract::The intercellular environment is known to be very different from the environment where most of the elementary biological processes are studied in the laboratory. As a result, there was a considerable effort on cell mimicking either by confinement or by introducing macromolecular crowding. In the present study, dextran...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00599

    authors: Das N,Sen P

    更新日期:2018-10-23 00:00:00

  • Sugar recognition by CscB and LacY.

    abstract::The sucrose permease (CscB) and lactose permease (LacY) of Escherichia coli belong to the oligosaccharide/H(+) symporter subfamily of the major facilitator superfamily, and both catalyze sugar/H(+) symport across the cytoplasmic membrane. Thus far, there is no common substrate for the two permeases; CscB transports su...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201592y

    authors: Sugihara J,Smirnova I,Kasho V,Kaback HR

    更新日期:2011-12-27 00:00:00

  • Acid-base properties of ionophore A23187 in methanol-water solutions and bound to unilamellar vesicles of dimyristoylphosphatidylcholine.

    abstract::The acid-base properties of ionophore A23187 in methanol-water solutions (0--95% w/w) and bound to unilamellar vesicles of dimyristoylphosphatidylcholine were examined by ultraviolet and fluorescence spectroscopy, and the spectral properties for the acidic and basic forms were defined under these conditions. Standard ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00539a023

    authors: Kauffman RF,Taylor RW,Pfeiffer DR

    更新日期:1982-05-11 00:00:00

  • Human Cytosolic and Mitochondrial Serine Hydroxymethyltransferase Isoforms in Comparison: Full Kinetic Characterization and Substrate Inhibition Properties.

    abstract::Serine hydroxymethyltransferase (SHMT) catalyzes the reversible conversion of l-serine and tetrahydrofolate into glycine and 5,10-methylenetetrahydrofolate. This enzyme, which plays a pivotal role in one-carbon metabolism, is involved in cancer metabolic reprogramming and is a recognized target of chemotherapy interve...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b01074

    authors: Tramonti A,Nardella C,di Salvo ML,Barile A,Cutruzzolà F,Contestabile R

    更新日期:2018-12-26 00:00:00

  • Fusion of phospholipid vesicles induced by muscle glyceraldehyde-3-phosphate dehydrogenase in the absence of calcium.

    abstract::Ca2+-induced fusion of phospholipid vesicles (phosphatidylcholine/phosphatidic acid, 9:1 mol/mol) prepared by ethanolic injection was followed by five different procedures: resonance energy transfer, light scattering, electron microscopy, intermixing of aqueous content, and gel filtration through Sepharose 4-B. The fi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00329a015

    authors: Morero RD,Viñals AL,Bloj B,Farías RN

    更新日期:1985-04-09 00:00:00

  • Interactions of factor XIII with fibrin as substrate and cofactor.

    abstract::Factor XIIIa (a2') is a homodimeric transglutaminase that is formed via limited alpha-thrombin-catalyzed proteolysis of the platelet (a2) or plasma (a2b2) factor XIII zymogen in a reaction that results in proteolytic removal of a 37-aminoacyl residue peptide from the N-terminus of the a chains and exposure of the acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00117a017

    authors: Hornyak TJ,Shafer JA

    更新日期:1992-01-21 00:00:00

  • Formation of a noncovalent serpin-proteinase complex involves no conformational change in the serpin. Use of 1H-15N HSQC NMR as a sensitive nonperturbing monitor of conformation.

    abstract::A structural understanding of the nature and scope of serpin inhibition mechanisms has been limited by the inability so far to crystallize any serpin-proteinase complex. We describe here the application of [(1)H-(15)N]-HSQC NMR on uniformly and residue-selectively (15)N-labeled serpin alpha(1)-proteinase inhibitor (Pi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001152+

    authors: Peterson FC,Gordon NC,Gettins PG

    更新日期:2000-10-03 00:00:00

  • Overexpression and divalent metal binding properties of the methionyl aminopeptidase from Pyrococcus furiosus.

    abstract::The gene encoding for the methionyl aminopeptidase from the hyperthermophilic archaeon Pyrococcus furiosus (PfMetAP-II; EC 3.4.11.18) has been inserted into a pET 27b(+) vector and overexpressed in Escherichia coli. The new expression system resulted in a 5-fold increase in purified enzyme obtained from a 5 L fermento...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020138p

    authors: Meng L,Ruebush S,D'souza VM,Copik AJ,Tsunasawa S,Holz RC

    更新日期:2002-06-11 00:00:00

  • Fourier-transform infrared spectroscopy of phytochrome: difference spectra of the intermediates of the photoreactions.

    abstract::The photocycle of 124 kDa phytochrome A from Avena sativa was studied by Fourier-transform infrared spectroscopy at low temperatures. Difference spectra between the parent state Pr and the intermediates of the Pr-->Pfr pathway, i.e. lumi-R, meta-Ra, and meta-Rc, and between Pfr and the intermediates of the Pfr-->Pr pa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960960r

    authors: Foerstendorf H,Mummert E,Schäfer E,Scheer H,Siebert F

    更新日期:1996-08-20 00:00:00

  • Backbone Flexibility Influences Nucleotide Incorporation by Human Translesion DNA Polymerase η opposite Intrastrand Cross-Linked DNA.

    abstract::Intrastrand cross-links (IaCL) connecting two purine nucleobases in DNA pose a challenge to high-fidelity replication in the cell. Various repair pathways or polymerase bypass can cope with these lesions. The influence of the phosphodiester linkage between two neighboring 2'-deoxyguanosine (dG) residues attached throu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01078

    authors: O'Flaherty DK,Guengerich FP,Egli M,Wilds CJ

    更新日期:2015-12-29 00:00:00

  • An error-prone viral DNA ligase.

    abstract::Our recent demonstration that DNA polymerase X (Pol X), the DNA repair polymerase encoded by the African swine fever virus (ASFV), is extremely error prone during single-nucleotide gap filling led us to hypothesize that it might contribute to genetic variability in ASFV. For the infidelity of Pol X to be relevant, how...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047706g

    authors: Lamarche BJ,Showalter AK,Tsai MD

    更新日期:2005-06-14 00:00:00

  • The metastasis-associated extracellular matrix protein osteopontin forms transient structure in ligand interaction sites.

    abstract::Osteopontin (OPN) is an acidic hydrophilic glycophosphoprotein that was first identified as a major sialoprotein in bones. It functions as a cell attachment protein displaying a RGD cell adhesion sequence and as a cytokine that signals through integrin and CD44 cell adhesion molecules. OPN is also implicated in human ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200291e

    authors: Platzer G,Schedlbauer A,Chemelli A,Ozdowy P,Coudevylle N,Auer R,Kontaxis G,Hartl M,Miles AJ,Wallace BA,Glatter O,Bister K,Konrat R

    更新日期:2011-07-12 00:00:00

  • Allocrite Sensing and Binding by the Breast Cancer Resistance Protein (ABCG2) and P-Glycoprotein (ABCB1).

    abstract::The ATP binding cassette (ABC) transporters ABCG2 and ABCB1 perform ATP hydrolysis-dependent efflux of structurally highly diverse compounds, collectively called allocrites. Whereas much is known about allocrite-ABCB1 interactions, the chemical nature and strength of ABCG2-allocrite interactions have not yet been asse...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00649

    authors: Xu Y,Egido E,Li-Blatter X,Müller R,Merino G,Bernèche S,Seelig A

    更新日期:2015-10-13 00:00:00

  • MerR cross-links to the alpha, beta, and sigma 70 subunits of RNA polymerase in the preinitiation complex at the merTPCAD promoter.

    abstract::MerR, the metalloregulator of the mercury resistance (mer) operon, binds the operator (merO)between -10 and -35 of the merTPCAD promoter (PT) and sequesters RNA polymerase (RNAP) in a closed complex. MerR represses PT until Hg(II) induces it to underwind merO DNA and thus facilitate open complex formation. We used cro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982814m

    authors: Kulkarni RD,Summers AO

    更新日期:1999-03-16 00:00:00

  • Mn2+ is a native metal ion activator for bacteriophage lambda protein phosphatase.

    abstract::Bacteriophage lambda protein phosphatase (lambdaPP) is a member of a large family of metal-containing phosphoesterases, including purple acid phosphatase, protein serine/threonine phosphatases, 5'-nucleotidase, and DNA repair enzymes such as Mre11. lambdaPP can be activated several-fold by various divalent metal ions,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026317o

    authors: Reiter TA,Reiter NJ,Rusnak F

    更新日期:2002-12-24 00:00:00

  • Heteronuclear 3D NMR studies of water bound to an FK506 binding protein/immunosuppressant complex.

    abstract::From a series of 15N-resolved 3D ROESY-HMQC and 13C-resolved 3D NOESY-HMQC spectra of the FK506 binding protein (FKBP)/ascomycin complex in H2O, the locations of three tightly bound water molecules were identified. These waters are all buried within the interior of the complex and form an integral part of its structur...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00061a004

    authors: Xu RX,Meadows RP,Fesik SW

    更新日期:1993-03-16 00:00:00

  • Evolution of the antibiotic resistance protein, FosA, is linked to a catalytically promiscuous progenitor.

    abstract::The fosfomycin (1) resistance proteins FosA and FosX in pathogenic microorganisms are related to a catalytically promiscuous progenitor encoded in a phn operon in Mesorhizobium loti. The mlr3345 gene product (FosX(Ml)) from M. loti has a very low epoxide hydrolase activity and even lower glutathione transferase activi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900078q

    authors: Brown DW,Schaab MR,Birmingham WR,Armstrong RN

    更新日期:2009-03-10 00:00:00

  • Association of botulinum neurotoxin serotypes a and B with synaptic vesicle protein complexes.

    abstract::Botulinum neurotoxins (BoNTs) elicit flaccid paralysis through cleavage of SNARE proteins within peripheral neurons. There are seven serotypes of the BoNTs, termed A-G, which differ in the SNARE protein and/or site that is cleaved. BoNTs are single-chain toxins that comprise an N-terminal zinc metalloprotease domain t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602396x

    authors: Baldwin MR,Barbieri JT

    更新日期:2007-03-20 00:00:00

  • Oxygen equilibria of Octopus dofleini hemocyanin.

    abstract::Oxygen binding by Octopus dofleini hemocyanin was examined under very nearly physiological conditions. The effects of pH, ionic composition, temperature, and aggregation were controlled so that the role each plays in modulating oxygen binding can be isolated. There is a very large effect of pH on affinity, the Bohr ef...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00338a015

    authors: Miller KI

    更新日期:1985-08-13 00:00:00

  • Differential scanning calorimetry study of local anesthetic effects on F1ATPase and submitochondrial particles.

    abstract::The differential scanning calorimetry trace of F1ATPase, prepared from beef heart submitochondrial particles, has a single sharp endothermic transition at 80.5 +/- 1.0 degrees C and a half-height peak width of 2.0 +/- 0.2 degrees. The transition enthalpy is 19 +/- 2 cal/g of protein. Submitochondrial particles (SMP) h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00328a022

    authors: Kresheck GC,Adade AB,Vanderkooi G

    更新日期:1985-03-26 00:00:00

  • Dismutase activity of ADP-L-glycero-D-manno-heptose 6-epimerase: evidence for a direct oxidation/reduction mechanism.

    abstract::The first positive evidence for the utilization of a direct C-6' ' oxidation/reduction mechanism by ADP-l-glycero-d-manno-heptose 6-epimerase is reported here. The epimerase (HldD or AGME, formerly RfaD) operates in the biosynthetic pathway of l-glycero-d-manno-heptose, which is a conserved sugar in the core region of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050106c

    authors: Morrison JP,Read JA,Coleman WG Jr,Tanner ME

    更新日期:2005-04-19 00:00:00

  • Differential scanning calorimetry study of the thermodynamic stability of some mutants of Sso7d from Sulfolobus solfataricus.

    abstract::Sso7d from the thermoacidophilic archaebacterium Sulfolobus solfataricus is a small globular protein with a known three-dimensional structure. Inspection of the structure reveals that Phe31 is a member of the aromatic cluster forming the protein hydrophobic core, whereas Trp23 is located on the protein surface and its...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972994k

    authors: Catanzano F,Graziano G,Fusi P,Tortora P,Barone G

    更新日期:1998-07-21 00:00:00

  • Fluorescence spectroscopy of the longwave chlorophylls in trimeric and monomeric photosystem I core complexes from the cyanobacterium Spirulina platensis.

    abstract::The organization and interaction of chlorophylls (Chl) and the kinetics of the energy transfer in the core antenna of photosystem I (PSI) trimeric and monomeric complexes, isolated from Spirulina platensis with Triton X-100 have been studied by stationary and time-resolved fluorescence. At 295 K both complexes show an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970386z

    authors: Karapetyan NV,Dorra D,Schweitzer G,Bezsmertnaya IN,Holzwarth AR

    更新日期:1997-11-11 00:00:00

  • Compartmentation of glucose and fructose 1,6-bisphosphate metabolism in vascular smooth muscle.

    abstract::We examined the metabolism of exogenously added 13C-labeled fructose 1,6-bisphosphate (either labeled at the first and sixth carbons or labeled at the first carbon only) and of [2-13C]glucose in well-oxygenated and well-superfused hog carotid artery segments. Exogenously added fructose 1,6-bisphosphate was utilized by...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00004a027

    authors: Hardin CD,Roberts TM

    更新日期:1995-01-31 00:00:00

  • Regioselectivity in the homolytic cleavage of S-adenosylmethionine.

    abstract::The observed regioselectivity of the homolytic cleavage of S-adenosylmethionine (SAM) by the radical SAM enzymes is modeled by free radical displacement reactions at sulfoxide centers. These displacements are also regioselective, in direct consequence of the reaction mechanism. The selectivity in the radical SAM react...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101509u

    authors: Kampmeier JA

    更新日期:2010-12-28 00:00:00