The crystal structure of eosinophil cationic protein in complex with 2',5'-ADP at 2.0 A resolution reveals the details of the ribonucleolytic active site.

Abstract:

:Eosinophil cationic protein (ECP) is a component of the eosinophil granule matrix. It shows marked toxicity against helminth parasites, bacteria single-stranded RNA viruses, and host epithelial cells. Secretion of human ECP is related to eosinophil-associated allergic, asthmatic, and inflammatory diseases. ECP belongs to the pancreatic ribonuclease superfamily of proteins, and the crystal structure of ECP in the unliganded form (determined previously) exhibited a conserved RNase A fold [Boix, E., et al. (1999) Biochemistry 38, 16794-16801]. We have now determined a high-resolution (2.0 A) crystal structure of ECP in complex with adenosine 2',5'-diphosphate (2',5'-ADP) which has revealed the details of the ribonucleolytic active site. Residues Gln-14, His-15, and Lys-38 make hydrogen bond interactions with the phosphate at the P(1) site, while His-128 interacts with the purine ring at the B(2) site. A new phosphate binding site, P(-)(1), has been identified which involves Arg-34. This study is the first detailed structural analysis of the nucleotide recognition site in ECP and provides a starting point for the understanding of its substrate specificity and low catalytic efficiency compared with that of the eosinophil-derived neurotoxin (EDN), a close homologue.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Mohan CG,Boix E,Evans HR,Nikolovski Z,Nogués MV,Cuchillo CM,Acharya KR

doi

10.1021/bi0264521

subject

Has Abstract

pub_date

2002-10-08 00:00:00

pages

12100-6

issue

40

eissn

0006-2960

issn

1520-4995

pii

bi0264521

journal_volume

41

pub_type

杂志文章
  • Lipid mobility and order in bovine rod outer segment disk membranes. A spin-label study of lipid-protein interactions.

    abstract::Lipid-protein interactions in bovine rod outer segment disk membranes have been studied by using a series of eight stearic acid spin-label probes which were labeled at different carbon atom positions in the chain. In randomly oriented membrane dispersions, the electron spin resonance (ESR) spectra of the C-8, C-9, C-1...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00375a005

    authors: Pates RD,Marsh D

    更新日期:1987-01-13 00:00:00

  • Mutagenic events in Escherichia coli and mammalian cells generated in response to acetylaminofluorene-derived DNA adducts positioned in the Nar I restriction enzyme site.

    abstract::Comparative mutagenesis studies of N-(2'-deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) and N-(2'-deoxyguanosin-8-yl)-2-aminofluorene (dG-AF) adducts positioned in the Nar I restriction enzyme site were performed using Escherichia coli (E. coli) and simian kidney (COS-7) cells. Oligodeoxynucleotides ((5)(')TCCTCG(...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0202878

    authors: Tan X,Suzuki N,Grollman AP,Shibutani S

    更新日期:2002-12-03 00:00:00

  • Crystal structure of thymidylate synthase from T4 phage: component of a deoxynucleoside triphosphate-synthesizing complex.

    abstract::Thymidylate synthase from phage T4 (T4TS) is part of a complex of several enzymes required for coordinate DNA synthesis in infected Escherichia coli cells. It has been proposed that similar complexes of enzymes related to DNA synthesis are also functional in eukaryotes [Pardee, A. B. (1989) Science 246, 603-608]. To d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00255a028

    authors: Finer-Moore JS,Maley GF,Maley F,Montfort WR,Stroud RM

    更新日期:1994-12-27 00:00:00

  • Specific activation of transcription initiation by the sequence-specific DNA-binding agents distamycin A and netropsin.

    abstract::A series of promoters with nine base-pair substitutions in the spacer DNA separating the -10 and -35 regions was used to demonstrate that Escherichia coli RNA polymerase is sensitive to events affecting the spacer DNA--a region not directly contacted by the enzyme. The drugs distamycin A and netropsin specifically enh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00377a040

    authors: Bruzik JP,Auble DT,deHaseth PL

    更新日期:1987-02-10 00:00:00

  • Crotonase-catalyzed beta-elimination is concerted: a double isotope effect study.

    abstract::Determining the sequence of bond cleavages, and consequently the nature of intermediates, in enzyme-catalyzed reactions is a major goal of mechanistic enzymology. When significant primary isotope effects on V/K are observed for two different bond cleavages, both bonds may be broken in the same transition state or they...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00238a013

    authors: Bahnson BJ,Anderson VE

    更新日期:1991-06-18 00:00:00

  • Apocalmodulin and Ca2+ calmodulin bind to the same region on the skeletal muscle Ca2+ release channel.

    abstract::The skeletal muscle Ca2+ release channel (RYR1) is regulated by calmodulin in both its Ca2+-free (apocalmodulin) and Ca2+-bound (Ca2+ calmodulin) states. Apocalmodulin is an activator of the channel, and Ca2+ calmodulin is an inhibitor of the channel. Both apocalmodulin and Ca2+ calmodulin binding sites on RYR1 are de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9907431

    authors: Moore CP,Rodney G,Zhang JZ,Santacruz-Toloza L,Strasburg G,Hamilton SL

    更新日期:1999-06-29 00:00:00

  • Oxidative inactivation of a charge transfer complex in the medium-chain acyl-CoA dehydrogenase.

    abstract::The intense charge transfer complex between the enolate of 3-thia-octanoyl-CoA and the oxidized flavin of the medium-chain acyl-CoA dehydrogenase is discharged by the ferricenium ion with irreversible inactivation of the enzyme. Charge transfer complex formation is a necessary, but insufficient, condition for oxidativ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00050a025

    authors: Schaller RA,Thorpe C

    更新日期:1995-12-19 00:00:00

  • Restriction endonuclease EcoRI alters the enantiomeric preference of chiral metallointercalators for DNA: an illustration of a protein-induced DNA conformational change.

    abstract::A conformational change in the DNA plasmid ColE1 appears to occur upon specific binding of the restriction endonuclease EcoRI. Enzyme association alters the chiral discrimination found in binding metallointercalators to DNA sites. The complexes tris(1,10-phenanthroline)ruthenium(II), Ru(phen)3(2+), tris(4,7-diphenyl-1...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00356a053

    authors: Barton JK,Paranawithana SR

    更新日期:1986-04-22 00:00:00

  • Biochemical characterization of the minichromosome maintenance (MCM) protein of the crenarchaeote Aeropyrum pernix and its interactions with the origin recognition complex (ORC) proteins.

    abstract::Replication in archaea is carried out by proteins that are homologues of eukaryotic counterparts. However, the archaeal systems tend to be much simpler with fewer different genes encoding the core functions than in eukaryotic counterparts. In many archaea, there is a single minichromosome maintenance (MCM) homologue, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801479s

    authors: Atanassova N,Grainge I

    更新日期:2008-12-16 00:00:00

  • An engineered disulfide cross-link accelerates the refolding rate of calcium-free subtilisin by 850-fold.

    abstract::The mature form of subtilisin is an unusual example of a monomeric protein with a high kinetic barrier to folding and unfolding. Using site-directed mutagenesis of subtilisin BPN', we are attempting to determine the physical and energetic nature of the kinetic barrier. The high-affinity calcium-binding site A has been...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00090a012

    authors: Strausberg S,Alexander P,Wang L,Gallagher T,Gilliland G,Bryan P

    更新日期:1993-10-05 00:00:00

  • 24-homologated 1,25-dihydroxyvitamin D3 compounds: separation of calcium and cell differentiation activities.

    abstract::A series of 24-homologated 1,25-dihydroxyvitamin D3 compounds have been chemically synthesized and studied with regard to their activity in inducing differentiation of human promyelocyte HL-60 cells to monocytes and in calcium mobilizing activity in vitamin D deficient rats. Homologation of 1,25-dihydroxyvitamin D3 or...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00453a026

    authors: Perlman K,Kutner A,Prahl J,Smith C,Inaba M,Schnoes HK,DeLuca HF

    更新日期:1990-01-09 00:00:00

  • Recombinant bovine heart mitochondrial F1-ATPase inhibitor protein: overproduction in Escherichia coli, purification, and structural studies.

    abstract::A synthetic gene coding for the inhibitor protein of bovine heart mitochondrial F1 adenosine triphosphatase was designed and cloned in Escherichia coli. Recombinant F1-ATPase inhibitor protein was overproduced in E. coli and secreted to the periplasmic space. Biologically active recombinant F1-ATPase inhibitor protein...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00089a033

    authors: Van Heeke G,Deforce L,Schnizer RA,Shaw R,Couton JM,Shaw G,Song PS,Schuster SM

    更新日期:1993-09-28 00:00:00

  • Inactivation of human lung tryptase: evidence for a re-activatable tetrameric intermediate and active monomers.

    abstract::Human lung tryptase (HLT), a trypsin-like serine proteinase stored as an active enzyme in association with heparin in mast cell granules, is released into the extracellular environment when mast cells are activated. Tryptases are unusual in that they form tetramers and bind heparin. As there are no known endogenous tr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960042t

    authors: Addington AK,Johnson DA

    更新日期:1996-10-22 00:00:00

  • Mechanism of oligonucleotide loop formation in solution.

    abstract::We have studied the tridecadeoxynucleotide CGCGAATTACGCG (I), which contains an additional A at position 9 compared to the dodecanucleotide of which the crystal structure has been determined. Sequence I exhibits no distinct melting curve and also has a concentration-dependent pattern of peaks on reverse-phase chromato...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00371a025

    authors: Roy S,Weinstein S,Borah B,Nickol J,Appella E,Sussman JL,Miller M,Shindo H,Cohen JS

    更新日期:1986-11-18 00:00:00

  • Phosphoinositide 3-kinase in rat liver nuclei.

    abstract::Biochemical and immunochemical data from the present investigation reveal the existence of a p85/p110 phosphoinositide 3-kinase (PI 3-kinase) in rat liver nuclei. 32P-Labeling of membrane phosphoinositides by incubating intact nuclei with [gamma-32P]ATP results in the formation of [32P]phosphatidyl-inositol 3,4, 5-tri...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972551g

    authors: Lu PJ,Hsu AL,Wang DS,Yan HY,Yin HL,Chen CS

    更新日期:1998-04-21 00:00:00

  • Fusion of influenza hemagglutinin-expressing fibroblasts with glycophorin-bearing liposomes: role of hemagglutinin surface density.

    abstract::Influenza virus gains access to the cytoplasm of its host cell by means of a fusion event between viral and host cell membrane. Fusion is mediated by the envelope glycoprotein hemagglutinin (HA) and is triggered by low pH. To learn how many hemagglutinin trimers are necessary to cause membrane fusion, we have used two...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00493a027

    authors: Ellens H,Bentz J,Mason D,Zhang F,White JM

    更新日期:1990-10-16 00:00:00

  • Complex between a Multicrossover DNA Nanostructure, PX-DNA, and T7 Endonuclease I.

    abstract::Paranemic crossover DNA (PX-DNA) is a four-stranded multicrossover structure that has been implicated in recombination-independent recognition of homology. Although existing evidence has suggested that PX is the DNA motif in homologous pairing (HP), this conclusion remains ambiguous. Further investigation is needed bu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00057

    authors: Kizer M,Huntress ID,Walcott BD,Fraser K,Bystroff C,Wang X

    更新日期:2019-03-12 00:00:00

  • The linker between SH2 and kinase domains positively regulates catalysis of the Tec family kinases.

    abstract::Tec family nonreceptor tyrosine kinases are key immunological enzymes that control processes that range from T and B cell development to reorganization of the actin cytoskeleton. The full-length Tec kinases have been resistant to crystallization. This lack of structural data and the paucity of in vitro biochemical dat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602512e

    authors: Joseph RE,Min L,Andreotti AH

    更新日期:2007-05-08 00:00:00

  • Evidence for the amphipathic nature and tilted topology of helices 4 and 5 in the closed state of the colicin E1 channel.

    abstract::The membrane-bound closed channel structure of helices 4 and 5 (Lys-406-Asp-446) of the colicin E1 channel domain was investigated by using a site-directed fluorescence labeling technique. A bimane probe was covalently attached to a cysteine residue in a series of single-cysteine mutant proteins to scan each helix in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801906v

    authors: Ho D,Merrill AR

    更新日期:2009-02-17 00:00:00

  • 2- and 8-azido photoaffinity probes. 2. Studies on the binding process of 2-5A synthetase by photosensitive ATP analogues.

    abstract::The photoaffinity probes [gamma-32P]2-azidoATP (2-N3ATP) and [alpha-32P]8-azido-ATP (8-N3ATP) were used to investigate the binding of ATP to highly purified 2-5A synthetase. 2-N3ATP and 8-N3ATP are substrates for 2-5A synthetase [Suhadolnik, R.J., Karikó, K., Sobol, R.W., Jr., Li, S.W., Reichenbach, N.L., & Haley, B.E...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00424a024

    authors: Suhadolnik RJ,Li SW,Sobol RW Jr,Haley BE

    更新日期:1988-11-29 00:00:00

  • Dissecting the catalytic mechanism of betaine-homocysteine S-methyltransferase by use of intrinsic tryptophan fluorescence and site-directed mutagenesis.

    abstract::Betaine-homocysteine S-methyltransferase (BHMT) is a zinc-dependent enzyme that catalyzes the transfer of a methyl group from glycine betaine (Bet) to homocysteine (Hcy) to form dimethylglycine (DMG) and methionine (Met). Previous studies in other laboratories have indicated that catalysis proceeds through the formati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049821x

    authors: Castro C,Gratson AA,Evans JC,Jiracek J,Collinsová M,Ludwig ML,Garrow TA

    更新日期:2004-05-11 00:00:00

  • N-linked neutral sugar chains of aminopeptidase N purified from rat small intestinal brush-border membrane.

    abstract::Neutral oligosaccharides, which accounted for 74% of the total N-linked sugar chains released by hydrazinolysis of rat small intestinal aminopeptidase N, were investigated on a structural basis. They are mainly composed of complex-type sugar chains with tri- and tetraantennary structures, and small amounts of high man...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00101a028

    authors: Takasaki S,Erickson RH,Kim YS,Kochibe N,Kobata A

    更新日期:1991-09-17 00:00:00

  • Kringle 4 from human plasminogen: a proton magnetic resonance study via two-dimensional photochemically induced dynamic nuclear polarization spectroscopy.

    abstract::Two-dimensional (2D) proton magnetic resonance techniques used in conjunction with laser photochemically induced dynamic nuclear polarization (photo-CIDNP) spectroscopy have been applied to studying the kringle 4 domain from human plasminogen at 360 MHz. Out of 11 potential CIDNP-sensitive aromatic side chains, only 5...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00372a020

    authors: De Marco A,Zetta L,Petros AM,Llinás M,Boelens R,Kaptein R

    更新日期:1986-12-02 00:00:00

  • Mechanistic inferences from the binding of ligands to LpxC, a metal-dependent deacetylase.

    abstract::The metal-dependent deacetylase LpxC catalyzes the first committed step of lipid A biosynthesis in Gram-negative bacteria. Accordingly, LpxC is an attractive target for the development of inhibitors that may serve as potential new antibiotics for the treatment of Gram-negative bacterial infections. Here, we report the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060823m

    authors: Gennadios HA,Whittington DA,Li X,Fierke CA,Christianson DW

    更新日期:2006-07-04 00:00:00

  • Binding studies on anti-fructofuranan mouse myeloma immunoglobulins A47N, A4, U61, and E109.

    abstract::Four murine myeloma immunoglobulins, A4, A47N, U61, and E109, have been studied for their binding affinities with inulin and a series of oligosaccharides derived from inulin. The results indicate that the combining site of these immunoglobulins shows highest complementarity for a trifructofuranosyl sequence (A4 and A4...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00636a005

    authors: Streefkerk DG,Glaudemans CP

    更新日期:1977-08-23 00:00:00

  • Probing receptor binding activity of interleukin-8 dimer using a disulfide trap.

    abstract::Interleukin-8 (IL-8), a member of the chemokine superfamily, exists as both monomers and dimers, and mediates its function by binding to neutrophil CXCR1 and CXCR2 receptors that belong to the G protein-coupled receptor class. It is now well established that the monomer functions as a high-affinity ligand, but the bin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0605944

    authors: Rajarathnam K,Prado GN,Fernando H,Clark-Lewis I,Navarro J

    更新日期:2006-06-27 00:00:00

  • Interconverting receptor states at 4 degrees C for the neutrophil N-formyl peptide receptor.

    abstract::With the aid of high time resolution kinetic data extracted from a flow cytometer, we determined that there are two N-formyl peptide receptor states for human neutrophils at 4 degrees C: a low affinity and a high affinity state. Competitive binding of FMLP, FNLP, and t-BOC with FNLPNTL-FL revealed different kinetic ra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961088p

    authors: Hoffman JF,Keil ML,Riccobene TA,Omann GM,Linderman JJ

    更新日期:1996-10-08 00:00:00

  • Through the Lipopolysaccharide Glass: A Potent Antimicrobial Peptide Induces Phase Changes in Membranes.

    abstract::In the following, molecular simulations are used to reveal unexpected behavior within bacterial membranes. We show that lipopolysaccharide molecules found in these membranes form viscous amorphous solids when they are interlinked with monovalent and divalent cations. The bilayers exhibit both liquid and glassy charact...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01063

    authors: Jefferies D,Hsu PC,Khalid S

    更新日期:2017-03-21 00:00:00

  • Dihydrofolate reductase from Escherichia coli: probing the role of aspartate-27 and phenylalanine-137 in enzyme conformation and the binding of NADPH.

    abstract::In the absence of ligands, dihydrofolate reductase from Escherichia coli exists in at least two interconvertible conformations, only one of which binds NADPH with high affinity. This equilibrium is pH dependent, involving an ionizable group of the enzyme (pK approximately 5.5), and the proportion of the NADPH-binding ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00489a010

    authors: Dunn SM,Lanigan TM,Howell EE

    更新日期:1990-09-18 00:00:00

  • Pre-steady-state kinetics of the microtubule-kinesin ATPase.

    abstract::The pre-steady-state kinetics of the microtubule-kinesin ATPase were investigated by chemical-quench flow methods using the Drosophila kinesin motor domain (K401) expressed in Escherichia coli [Gilbert, S. P., & Johnson, K. A. (1993) Biochemistry 32, 4677-4684]. The results define a minimal mechanism: M.K + ATP in equ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00173a044

    authors: Gilbert SP,Johnson KA

    更新日期:1994-02-22 00:00:00