Probing receptor binding activity of interleukin-8 dimer using a disulfide trap.

Abstract:

:Interleukin-8 (IL-8), a member of the chemokine superfamily, exists as both monomers and dimers, and mediates its function by binding to neutrophil CXCR1 and CXCR2 receptors that belong to the G protein-coupled receptor class. It is now well established that the monomer functions as a high-affinity ligand, but the binding affinity of the dimer remains controversial. The approximately 1000-fold difference between monomer-dimer equilibrium constant (microM) and receptor binding constant (nM) of IL-8 does not allow receptor-binding affinity measurements of the native IL-8 dimer. In this study, we overcame this roadblock by creating a "trapped" nondissociating dimer that contains a disulfide bond across the dimer interface at the 2-fold symmetry point. The NMR studies show that the structure of this trapped dimer is indistinguishable from the native dimer. The trapped dimer, compared to a trapped monomer, bound CXCR1 with approximately 70-fold and CXCR2 with approximately 20-fold lower affinities. Receptor binding involves two interactions, between the IL-8 N-loop and receptor N-domain residues, and between IL-8 N-terminal and receptor extracellular loop residues. In contrast to a trapped monomer that bound an isolated CXCR1 N-domain peptide with microM affinity, the trapped dimer failed to show any binding, indicating that dimerization predominantly perturbs the binding of only the N-loop residues. These results demonstrate that only the monomer is a high-affinity ligand for both receptors, and also provide a structural basis for the lower binding affinity of the dimer.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Rajarathnam K,Prado GN,Fernando H,Clark-Lewis I,Navarro J

doi

10.1021/bi0605944

subject

Has Abstract

pub_date

2006-06-27 00:00:00

pages

7882-8

issue

25

eissn

0006-2960

issn

1520-4995

journal_volume

45

pub_type

杂志文章
  • Complex between a Multicrossover DNA Nanostructure, PX-DNA, and T7 Endonuclease I.

    abstract::Paranemic crossover DNA (PX-DNA) is a four-stranded multicrossover structure that has been implicated in recombination-independent recognition of homology. Although existing evidence has suggested that PX is the DNA motif in homologous pairing (HP), this conclusion remains ambiguous. Further investigation is needed bu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00057

    authors: Kizer M,Huntress ID,Walcott BD,Fraser K,Bystroff C,Wang X

    更新日期:2019-03-12 00:00:00

  • The alpha-helical domain of liver fatty acid binding protein is responsible for the diffusion-mediated transfer of fatty acids to phospholipid membranes.

    abstract::Intestinal fatty acid binding protein (IFABP) and liver FABP (LFABP), homologous proteins expressed at high levels in intestinal absorptive cells, employ markedly different mechanisms for the transfer of fatty acids (FAs) to acceptor membranes. Transfer from IFABP occurs during protein-membrane collisional interaction...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0357356

    authors: Córsico B,Liou HL,Storch J

    更新日期:2004-03-30 00:00:00

  • Comparative structural analysis of HLA-A2 antigens distinguishable by cytotoxic T lymphocytes: variants M7 and DR1.

    abstract::Comparative primary structural analyses have begun to elucidate polymorphic residues and segments of the class I antigens of the major histocompatibility complex, at least some of which presumably contribute to determinants important in immune recognition events. HLA-A2 structural variants have been described which ar...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00267a042

    authors: Krangel MS,Taketani S,Biddison WE,Strong DM,Strominger JL

    更新日期:1982-11-23 00:00:00

  • Abortive initiation and long ribonucleic acid synthesis.

    abstract::In vitro transcription assays have been used to study the rate of ribonucleic acid (RNA) synthesis from the Escherichia coli lactose promotor mutant lacL8UV5 contained on a 203-bp (base pair) restriction fragment. The half-life of long (63-base) RNA production from heparin-resistant RNA polymerase-promotor complexes w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00511a003

    authors: Munson LM,Reznikoff WS

    更新日期:1981-04-14 00:00:00

  • Structure of MMACHC reveals an arginine-rich pocket and a domain-swapped dimer for its B12 processing function.

    abstract::Defects in the MMACHC gene represent the most common disorder of cobalamin (Cbl) metabolism, affecting synthesis of the enzyme cofactors adenosyl-Cbl and methyl-Cbl. The encoded MMACHC protein binds intracellular Cbl derivatives with different upper axial ligands and exhibits flavin mononucleotide (FMN)-dependent decy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300150y

    authors: Froese DS,Krojer T,Wu X,Shrestha R,Kiyani W,von Delft F,Gravel RA,Oppermann U,Yue WW

    更新日期:2012-06-26 00:00:00

  • Structure of Ralstonia eutropha flavohemoglobin in complex with three antibiotic azole compounds.

    abstract::Flavohemoglobins (flavoHbs) are enzymes that operate primarily as nitric oxide dioxygenases and shuttle thereby electrons among NAD(P)H, FAD, heme, and a ligated redox-active substrate such as O(2). They function in the bacterial defense against nitrosative stress and are therefore considered as targets for new antibi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101650q

    authors: El Hammi E,Warkentin E,Demmer U,Limam F,Marzouki NM,Ermler U,Baciou L

    更新日期:2011-02-22 00:00:00

  • Structural and Mutagenesis Studies Evince the Role of the Extended Protuberant Domain of Ribosomal Protein uL10 in Protein Translation.

    abstract::The lateral stalk of ribosomes constitutes the GTPase-associated center and is responsible for recruiting translation factors to the ribosomes. The eukaryotic stalk contains a P-complex, in which one molecule of uL10 (formerly known as P0) protein binds two copies of P1/P2 heterodimers. Unlike bacterial uL10, eukaryot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00528

    authors: Choi KA,Yang L,Lee KM,Yu CW,Banfield DK,Ito K,Uchiumi T,Wong KB

    更新日期:2019-09-10 00:00:00

  • Regulation of nonmuscle myosin II by tropomyosin.

    abstract::The actin cytoskeleton carries out cellular functions, including division, migration, adhesion, and intracellular transport, that require a variety of actin binding proteins, including myosins. Our focus here is on class II nonmuscle myosin isoforms, NMIIA, NMIIB, and NMIIC, and their regulation by the actin binding p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500162z

    authors: Barua B,Nagy A,Sellers JR,Hitchcock-DeGregori SE

    更新日期:2014-06-24 00:00:00

  • Structural differences in the two agonist binding sites of the Torpedo nicotinic acetylcholine receptor revealed by time-resolved fluorescence spectroscopy.

    abstract::The nicotinic acetylcholine receptor (nAChR) from Torpedo marmorata carries two nonequivalent agonist binding sites at the alphadelta and alphagamma subunit interfaces. These sites have been characterized by time-resolved fluorescence with the partial nicotinic agonist dansyl-C(6)-choline (Dnscho). When bound to the d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992811p

    authors: Martinez KL,Corringer PJ,Edelstein SJ,Changeux JP,Mérola F

    更新日期:2000-06-13 00:00:00

  • Denatured proteins inhibit translation in hemin-supplemented rabbit reticulocyte lysate by inducing the activation of the heme-regulated eIF-2 alpha kinase.

    abstract::The heme-regulated inhibitor (HRI) of protein synthesis becomes activated in rabbit reticulocyte lysates in response to a variety of conditions including heme-deficiency, addition of oxidants, and heat shock. Activated HRI inhibits translation by catalyzing the phosphorylation of the alpha-subunit of eukaryotic initia...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00080a001

    authors: Matts RL,Hurst R,Xu Z

    更新日期:1993-07-27 00:00:00

  • Kinetic and structural studies on interactions between heparin or heparan sulfate and proteins of the hedgehog signaling pathway.

    abstract::Heparan sulfate (HS) proteoglycans (PGs) interact with a number of extracellular signaling proteins, thereby playing an essential role in the regulation of many physiological processes. These interactions are important for both normal signal transduction and regulation of the tissue distribution of signaling molecules...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi6025424

    authors: Zhang F,McLellan JS,Ayala AM,Leahy DJ,Linhardt RJ

    更新日期:2007-04-03 00:00:00

  • Evidence for the kinetic partitioning of polymerase activity on G-quadruplex DNA.

    abstract::We have investigated the action of the human DNA polymerase ε (hpol ε) and η (hpol η) catalytic cores on G-quadruplex (G4) DNA substrates derived from the promoter of the c-MYC proto-oncogene. The translesion enzyme hpol η exhibits a 6.2-fold preference for binding to G4 DNA over non-G4 DNA, while hpol ε binds both G4...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00060

    authors: Eddy S,Maddukuri L,Ketkar A,Zafar MK,Henninger EE,Pursell ZF,Eoff RL

    更新日期:2015-05-26 00:00:00

  • Solution conformation of asparagine-linked oligosaccharides: alpha(1-2)-, alpha(1-3)-, beta(1-2)-, and beta(1-4)-linked units.

    abstract::The solution conformation is presented for representatives of each of the major classes of asparaginyl oligosaccharides. In this report the conformation of alpha(1-3)-, alpha(1-2)-, beta(1-2)-, and beta(1-4)-linked units is described. The conformational properties of these glycopeptides were determined by high-resolut...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00284a021

    authors: Brisson JR,Carver JP

    更新日期:1983-07-19 00:00:00

  • Oxidative inactivation of a charge transfer complex in the medium-chain acyl-CoA dehydrogenase.

    abstract::The intense charge transfer complex between the enolate of 3-thia-octanoyl-CoA and the oxidized flavin of the medium-chain acyl-CoA dehydrogenase is discharged by the ferricenium ion with irreversible inactivation of the enzyme. Charge transfer complex formation is a necessary, but insufficient, condition for oxidativ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00050a025

    authors: Schaller RA,Thorpe C

    更新日期:1995-12-19 00:00:00

  • Alteration of the iron-sulfur cluster composition of Escherichia coli dimethyl sulfoxide reductase by site-directed mutagenesis.

    abstract::We have used site-directed mutagenesis to alter the [Fe-S] cluster composition of Escherichia coli dimethyl sulfoxide (DMSO) reductase (DmsABC). The electron-transfer subunit (DmsB) of this enzyme contains 16 Cys residues arranged in 4 groups (I-IV) which provide ligands to 4 [4Fe-4S] clusters [Cammack, R., & Weiner, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00098a003

    authors: Rothery RA,Weiner JH

    更新日期:1991-08-27 00:00:00

  • Substrate binding in the FAD-dependent hydroxynitrile lyase from almond provides insight into the mechanism of cyanohydrin formation and explains the absence of dehydrogenation activity.

    abstract::In a large number of plant species hydroxynitrile lyases catalyze the decomposition of cyanohydrins in order to generate hydrogen cyanide upon tissue damage. Hydrogen cyanide serves as a deterrent against herbivores and fungi. In vitro hydroxynitrile lyases are proficient biocatalysts for the stereospecific synthesis ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802162s

    authors: Dreveny I,Andryushkova AS,Glieder A,Gruber K,Kratky C

    更新日期:2009-04-21 00:00:00

  • Contrasting synergistic anion effects in vanadium(V) binding to nicatransferrin versus human serum transferrin.

    abstract::Some ascidians sequester vanadium and other metal ions that are bound and transported in higher organisms by transferrin. The ascidian Ciona intestinalis has a monolobal transferrin (nicatransferrin) in its plasma. The binding of vanadium(V) to nicatransferrin was investigated by using isothermal titration calorimetry...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901630j

    authors: Gaffney JP,Valentine AM

    更新日期:2009-12-15 00:00:00

  • Kinetics of cytochrome b oxidation in antimycin-treated submitochondrial particles.

    abstract::It has been shown that in bovine heart submitochondrial particles, antimycin and 2-heptyl-4-hydroxyquinoline N-oxide (HQNO) inhibit the oxidation of NADH, succinate, and reduced ubiquinone incompletely, the uninhibited rate being about 20-40 nmol of substrate oxidized min-1 (mg of protein)-1. By contrast, rotenone, cy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00268a045

    authors: Hatefi Y,Yagi T

    更新日期:1982-12-07 00:00:00

  • Cryoenzymic studies on actomyosin ATPase. Evidence that the degree of saturation of actin with myosin subfragment 1 affects the kinetics of the binding of ATP.

    abstract::The initial steps of actomyosin subfragment 1 (acto-S1) ATPase (dissociation and binding of ATP) were studied at -15 degrees C with 40% ethylene glycol as antifreeze. The dissociation kinetics were followed by light scattering in a stopped-flow apparatus, and the binding of ATP was followed by the ATP chase method in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00459a026

    authors: Tesi C,Travers F,Barman T

    更新日期:1990-02-20 00:00:00

  • Mechanism of heparin activation of antithrombin. Evidence for reactive center loop preinsertion with expulsion upon heparin binding.

    abstract::A heparin-induced conformational change is required to convert antithrombin from a slow to a fast inhibitor of factor Xa. It has been proposed [van Boeckel et al. (1994) Nat. Struct. Biol. 1, 423-425] that the reactive center residue P14 is inserted into beta-sheet A in native antithrombin and is displaced from the be...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9604643

    authors: Huntington JA,Olson ST,Fan B,Gettins PG

    更新日期:1996-07-02 00:00:00

  • Study of the conformational transition of A beta(1-42) using D-amino acid replacement analogues.

    abstract::A critical event in Alzheimer's disease is the transition of Abeta peptides from their soluble forms into disease-associated beta-sheet-rich conformers. Structural analysis of a complete D-amino acid replacement set of Abeta(1-42) enabled us to localize in the full-length 42-mer peptide the region responsible for the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002005e

    authors: Janek K,Rothemund S,Gast K,Beyermann M,Zipper J,Fabian H,Bienert M,Krause E

    更新日期:2001-05-08 00:00:00

  • Kinetics of biotinyl-5'-adenylate synthesis catalyzed by the Escherichia coli repressor of biotin biosynthesis and the stability of the enzyme-product complex.

    abstract::The Escherichia coli repressor of biotin biosynthesis is both a biotin ligase and the repressor of transcriptional initiation at the biotin biosynthetic operon. The small molecule, biotinyl-5'-adenylate (bio-5'-AMP), is the intermediate in the biotin ligation reaction and the positive allosteric effector for sequence-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00189a041

    authors: Xu Y,Beckett D

    更新日期:1994-06-14 00:00:00

  • Solution Behavior of the Intrinsically Disordered N-Terminal Domain of Retinoid X Receptor α in the Context of the Full-Length Protein.

    abstract::Retinoid X receptors (RXRs) are transcription factors with important functions in embryonic development, metabolic processes, differentiation, and apoptosis. A particular feature of RXRs is their ability to act as obligatory heterodimerization partners of class II nuclear receptors. At the same time, these receptors a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01122

    authors: Belorusova A,Osz J,Petoukhov MV,Peluso-Iltis C,Kieffer B,Svergun DI,Rochel N

    更新日期:2016-03-29 00:00:00

  • Structure of the eukaryotic initiation factor (eIF) 5 reveals a fold common to several translation factors.

    abstract::Eukaryotic initiation factor 5 (eIF5) plays multiple roles in translation initiation. Its N-terminal domain functions as a GTPase-activator protein (GAP) for GTP bound to eIF2, while its C-terminal region nucleates the interactions between multiple translation factors, including eIF1, which acts to inhibit GTP hydroly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052387u

    authors: Conte MR,Kelly G,Babon J,Sanfelice D,Youell J,Smerdon SJ,Proud CG

    更新日期:2006-04-11 00:00:00

  • Fitting the Pieces of the β-Barrel Assembly Machinery Complex.

    abstract::β-Barrel membrane proteins are found in the outer membranes of mitochondria, chloroplasts, and Gram-negative bacteria; however, exactly how they are folded and inserted remains unknown. Over the past decade, both functional and structural studies have greatly contributed to addressing this elusive mechanism. It is kno...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.5b00852

    authors: O'Neil PK,Rollauer SE,Noinaj N,Buchanan SK

    更新日期:2015-10-20 00:00:00

  • tRNA glycylation system from Thermus thermophilus. tRNAGly identity and functional interrelation with the glycylation systems from other phylae.

    abstract::The systems of tRNA glycylation belong to the most complex aminoacylation systems since neither the oligomeric structure of glycyl-tRNA synthetases (GlyRS) nor the discriminator bases in tRNAGly are conserved in the phylae. To better understand the structure-function relationship in glycylation systems of various orig...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991392t

    authors: Mazauric MH,Roy H,Kern D

    更新日期:1999-10-05 00:00:00

  • Electron transfer mechanism of the Rieske protein from Thermus thermophilus from solution nuclear magnetic resonance investigations.

    abstract::We report nuclear magnetic resonance (NMR) data indicating that the Rieske protein from the cytochrome bc complex of Thermus thermophilus (TtRp) undergoes modest redox-state-dependent and ligand-dependent conformational changes. To test models concerning the mechanism by which TtRp transfers between different sites on...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400296c

    authors: Hsueh KL,Tonelli M,Cai K,Westler WM,Markley JL

    更新日期:2013-04-30 00:00:00

  • The study of pH-dependent stability shows that the TPLH-mediated hydrogen-bonding network is important for the conformation and stability of human gankyrin.

    abstract::Ankyrin repeat (AR) proteins possess a distinctive modular and repetitive architecture, and their global folds are maintained by short-range interactions in terms of the primary sequence. In this work, we extended our previous study on the highly conserved TPLH tetrapeptide and investigated the impact of a solvent-exp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi4005717

    authors: Yuan C,Guo Y,Zhu L,Guo W,Mahajan A,Weghorst CM,Li J

    更新日期:2013-07-16 00:00:00

  • Localization of the factor IX propeptide binding site on recombinant vitamin K dependent carboxylase using benzoylphenylalanine photoaffinity peptide inactivators.

    abstract::The propeptide binding/activation site on the vitamin K dependent carboxylase has been localized to a region of carboxylase between residues Arg +50 and Glu +225 by photoinactivation studies using [125I]tyrosyl-labeled benzoylphenylalanine (Bpa)-containing analogs of proFIX19, a peptide containing residues -18 to +1 o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00002a012

    authors: Yamada M,Kuliopulos A,Nelson NP,Roth DA,Furie B,Furie BC,Walsh CT

    更新日期:1995-01-17 00:00:00

  • DNA photolyase repairs the trans-syn cyclobutane thymine dimer.

    abstract::DNA photolyases catalyze the splitting of the cyclobutane ring joining the two dihydropyrimidines of a pyrimidine dimer by a photoinduced electron-transfer reaction. Previous studies concluded that photolyase repairs only the cis-syn form of the eight stereoisomers of the cyclobutane pyrimidine dimer (Pyr[ ]Pyr). In t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00079a001

    authors: Kim ST,Malhotra K,Smith CA,Taylor JS,Sancar A

    更新日期:1993-07-20 00:00:00