pH-dependent properties of cobalt(II) carboxypeptidase A-inhibitor complexes.

Abstract:

:1H NMR spectroscopy of the isotropically shifted signals in cobalt carboxypeptidase, CoCPD, permits a direct and selective detection of protons belonging to the residues liganded to the metal. The chemical shift of these protons in the free enzyme and enzyme-inhibitor complexes with changing pH monitors the state of ionization of the ligands directly and of other residues in the active center indirectly. The 1H NMR spectrum of CoCPD at pH 6 shows three well-resolved isotropically shifted signals in the downfield region at 62 (a), 52 (c), and 45 (d) ppm which have been assigned to the NH proton of His-69 and to the C-4 H's of His-69 and His-196, respectively. Titration of signal a with pH is characterized by a pKa of 8.8 which is identical to that seen in prior electronic absorption and kinetic studies. The fact that the signal reflecting the NH of His-69 is still observed at pH 10 and no major shifts occur for the signals reflecting the C-4 H's indicates the alkaline pKa in carboxypeptidase A catalysis, pKEH, cannot be ascribed to ionization of the histidyl NH of either His-69 or His-196. Binding of L-Phe shifts this pKa to 7.7 while not greatly perturbing the downfield 1H NMR signals that reflect the ligation shell of the cobalt coordination sphere. These results indicate the pKa of 8.8 in CoCPD and the pKa of 7.7 in the CoCPD.L-Phe adduct reflect ionization of the same group.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Auld DS,Bertini I,Donaire A,Messori L,Moratal JM

doi

10.1021/bi00130a015

subject

Has Abstract

pub_date

1992-04-21 00:00:00

pages

3840-6

issue

15

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • Formation of monomeric S100B and S100A11 proteins at low ionic strength.

    abstract::The S100 proteins comprise a group of EF-hand proteins that undergo a calcium-induced conformational change allowing them to interact with other proteins and produce a biological response. A unique feature of these proteins is the fact that they can form both homo- and heterodimers independent of calcium binding. The ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802086a

    authors: Marlatt NM,Boys BL,Konermann L,Shaw GS

    更新日期:2009-03-10 00:00:00

  • Dynamics of light-induced conformational changes of the phoborhodopsin/transducer complex formed in the n-dodecyl beta-D-maltoside micelle.

    abstract::A complex of photoreceptor phoborhodopsin (ppR; also called sensory rhodopsin II) and its cognate halobacterial transducer II (pHtrII) existing in the plasma membrane mediates the light signal to the cytoplasm in the earliest step of negative phototaxis in Natronomonas pharaonis. We have investigated the dynamics of t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602482s

    authors: Taniguchi Y,Ikehara T,Kamo N,Yamasaki H,Toyoshima Y

    更新日期:2007-05-08 00:00:00

  • Heme and cysteine microenvironments of tuna apomyoglobin. Evidence of two independent unfolding regions.

    abstract::The heme and cysteine microenvironments of bluefin tuna apomyoglobin have been investigated by examining the fluorescence properties of two extrinsic chromophores, i.e., ANS and 1,5-AEDANS. 1,5-AEDANS was covalently bound to the single cysteine residue found in the primary structure of tuna apomyoglobin. Recombination...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00531a002

    authors: Colonna G,Balestrieri C,Bismuto E,Servillo L,Irace G

    更新日期:1982-01-19 00:00:00

  • Insights into the catalytic mechanisms of phenylalanine and tryptophan hydroxylase from kinetic isotope effects on aromatic hydroxylation.

    abstract::Phenylalanine hydroxylase (PheH) and tryptophan hydroxylase (TrpH) catalyze the aromatic hydroxylation of phenylalanine and tryptophan, forming tyrosine and 5-hydroxytryptophan, respectively. The reactions of PheH and TrpH have been investigated with [4-(2)H]-, [3,5-(2)H(2)]-, and (2)H(5)-phenylalanine as substrates. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0607554

    authors: Pavon JA,Fitzpatrick PF

    更新日期:2006-09-12 00:00:00

  • Dynamic nature of the quaternary structure of the vesicular stomatitis virus envelope glycoprotein.

    abstract::The envelope glycoprotein (G protein) of vesicular stomatitis virus probably exists in the viral envelope as a trimer of identical subunits. Depending on the conditions of solubilization, G protein may dissociate into monomers. G protein solubilized with the detergent octyl glucoside was shown to exist as oligomeric f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00462a002

    authors: Lyles DS,Varela VA,Parce JW

    更新日期:1990-03-13 00:00:00

  • The linker between SH2 and kinase domains positively regulates catalysis of the Tec family kinases.

    abstract::Tec family nonreceptor tyrosine kinases are key immunological enzymes that control processes that range from T and B cell development to reorganization of the actin cytoskeleton. The full-length Tec kinases have been resistant to crystallization. This lack of structural data and the paucity of in vitro biochemical dat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602512e

    authors: Joseph RE,Min L,Andreotti AH

    更新日期:2007-05-08 00:00:00

  • Locating monovalent cations in the grooves of B-DNA.

    abstract::Here we demonstrate that monovalent cations can localize around B-DNA in geometrically regular, sequence-specific sites in oligonucleotide crystals. Positions of monovalent ions were determined from high-resolution X-ray diffraction of DNA crystals grown in the presence of thallium(I) cations (Tl(+)). Tl(+) has previo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010391+

    authors: Howerton SB,Sines CC,VanDerveer D,Williams LD

    更新日期:2001-08-28 00:00:00

  • Influence of phosphoenolpyruvate and magnesium ions on the quaternary structure of enzyme I of the phosphotransferase system from gram-positive bacteria.

    abstract::Solution X-ray scattering patterns of enzyme I of the phosphotransferase system from Staphylococcus carnosus indicate an increase in radius of gyration and molecular mass in the presence of Mg2+ or both Mg2+ and phosphoenolpyruvate, indicating a partial dimerization of enzyme I. Mg2+ ions are essential for both the di...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00048a014

    authors: Hübner G,König S,Koch MH,Hengstenberg W

    更新日期:1995-12-05 00:00:00

  • Large changes in the CRAC segment of gp41 of HIV do not destroy fusion activity if the segment interacts with cholesterol.

    abstract::The membrane-proximal external region (MPER) of the gp41 fusion protein of HIV is highly conserved among isolates of this virus and is considered a target for vaccine development. This region also appears to play a role in membrane fusion as well as localization of the virus to cholesterol-rich domains in membranes. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8014828

    authors: Vishwanathan SA,Thomas A,Brasseur R,Epand RF,Hunter E,Epand RM

    更新日期:2008-11-11 00:00:00

  • Halogen Bonding: A Powerful Tool for Modulation of Peptide Conformation.

    abstract::Halogen bonding is a weak chemical force that has so far mostly found applications in crystal engineering. Despite its potential for use in drug discovery, as a new molecular tool in the direction of molecular recognition events, it has rarely been assessed in biopolymers. Motivated by this fact, we have developed a p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00429

    authors: Danelius E,Andersson H,Jarvoll P,Lood K,Gräfenstein J,Erdélyi M

    更新日期:2017-06-27 00:00:00

  • Kinetic studies of guinea pig liver transglutaminase reveal a general-base-catalyzed deacylation mechanism.

    abstract::Guinea pig liver transglutaminase (TGase) reacts with 0.1 mM N-Cbz-L-Glu(gamma-p-nitrophenyl ester)Gly (5, prepared herein, K(M) = 0.02 mM) to undergo rapid acylation that can be followed spectrophotometrically at 400 nm (pH 7.0, 25 degrees C). Deacylation of the transiently formed thiolester acyl enzyme intermediate ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0024097

    authors: Leblanc A,Gravel C,Labelle J,Keillor JW

    更新日期:2001-07-27 00:00:00

  • The 56-59-kilodalton protein identified in untransformed steroid receptor complexes is a unique protein that exists in cytosol in a complex with both the 70- and 90-kilodalton heat shock proteins.

    abstract::It has previously been shown that 9S, untransformed progestin, estrogen, androgen, and glucocorticoid receptor complexes in rabbit uterine and liver cytosols contain a 59-kDa protein [Tai, P. K., Maeda, Y., Nakao, K., Wakim, N. G., Duhring, J. L., & Faber, L. E. (1986) Biochemistry 25, 5269-5275]. In this work we show...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00473a021

    authors: Sanchez ER,Faber LE,Henzel WJ,Pratt WB

    更新日期:1990-05-29 00:00:00

  • Base protonation facilitates B-Z interconversions of poly(dG-dC) X poly(dG-dC).

    abstract::Comparative studies on the salt titration and the related kinetics for poly(dG-dC) X poly(dG-dC) in pH 7.0 and 3.8 solutions clearly suggest that base protonation facilitates the kinetics of B-Z interconversion although the midpoint for such a transition in acidic solution (2.0-2.1 M NaCl) is only slightly lower than ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00320a041

    authors: Chen FM

    更新日期:1984-12-04 00:00:00

  • pH dependence of tritium exchange with the C-2 protons of the histidines in bovine trypsin.

    abstract::At pH 8.9 and 37 degrees C the half-times for tritium exchange with the C-2 protons of the histidines of trypsin are 73 days for His-57, and greater than 1000 days for His-40 and His-91. These half-times are much longer than the half-life of exchange for the C-2 proton of free histidine (2.8 days at pD 8.2), and longe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00661a010

    authors: Krieger M,Koeppe RE 2nd,Stroud RM

    更新日期:1976-08-10 00:00:00

  • Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues.

    abstract::The crystallographic structure of oxygenated trHbN from Mycobacterium tuberculosis showed an extended heme distal site hydrogen-bonding network that includes Y(B10), Q(E11), and the bound O(2) (Milani, M., et al. (2001) EMBO J. 20, 3902-3909). In the present work, we analyze the effects that substitutions at the B10 a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060112o

    authors: Ouellet Y,Milani M,Couture M,Bolognesi M,Guertin M

    更新日期:2006-07-25 00:00:00

  • DNA strand arrangement within the SfiI-DNA complex: atomic force microscopy analysis.

    abstract::The SfiI restriction enzyme binds to DNA as a tetramer holding two usually distant DNA recognition sites together before cleavage of the four DNA strands. To elucidate structural properties of the SfiI-DNA complex, atomic force microscopy (AFM) imaging of the complexes under noncleaving conditions (Ca2+ instead of Mg2...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051767c

    authors: Lushnikov AY,Potaman VN,Oussatcheva EA,Sinden RR,Lyubchenko YL

    更新日期:2006-01-10 00:00:00

  • Purification and characterization of a Ca(2+)-activated thiol protease from Drosophila melanogaster.

    abstract::A Ca(2+)-activated thiol protease was purified from Drosophila melanogaster. The procedure involves Phenyl-Sepharose, Reactive Red-Agarose and Q-Sepharose fast flow (or MonoQ) chromatographic steps. The enzyme eluting from Q-Sepharose fast flow seems to be homogeneous as judged by silver staining on SDS-PAGE: it consi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00150a012

    authors: Pintér M,Stierandova A,Friedrich P

    更新日期:1992-09-08 00:00:00

  • 1H NMR sequential resonance assignments, secondary structure, and global fold in solution of the major (trans-Pro43) form of bovine calbindin D9k.

    abstract::A wide range of two-dimensional 1H NMR experiments have been used to completely assign the 500-MHz 1H NMR spectrum of recombinant Ca2+-saturated bovine calbindin D9k (76 amino acids, Mr = 8500). In solution, calbindin D9k exists as an equilibrium mixture of isoforms with trans (75%) and cis (25%) isomers of the peptid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00443a043

    authors: Kördel J,Forsén S,Chazin WJ

    更新日期:1989-08-22 00:00:00

  • Reactivity of C-terminal cysteines with HNO.

    abstract::Nitroxyl (HNO), a potential heart failure therapeutic, is known to target cysteine residues to form sulfinamides and/or disulfides. Because HNO-derived modifications may depend on their local environment, we have investigated the reactivity of HNO with cysteine derivatives and C-terminal cysteine-containing peptides a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500360x

    authors: Keceli G,Toscano JP

    更新日期:2014-06-10 00:00:00

  • Type II Binders Targeting the "GLR-Out" Conformation of the Pseudokinase STRADα.

    abstract::Pseudokinases play important roles in signal transduction and cellular processes similar to those of catalytically competent kinases. However, pseudokinase pharmacological tractability and conformational space accessibility are poorly understood. Pseudokinases have only recently been suggested to adopt "inactive" conf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00714

    authors: Smith RHB,Khan ZM,Ung PM,Scopton AP,Silber L,Mack SM,Real AM,Schlessinger A,Dar AC

    更新日期:2021-01-13 00:00:00

  • Switching catalysis from hydrolysis to perhydrolysis in Pseudomonas fluorescens esterase.

    abstract::Many serine hydrolases catalyze perhydrolysis, the reversible formation of peracids from carboxylic acids and hydrogen peroxide. Recently, we showed that a single amino acid substitution in the alcohol binding pocket, L29P, in Pseudomonas fluorescens (SIK WI) aryl esterase (PFE) increased the specificity constant of P...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9021268

    authors: Yin DL,Bernhardt P,Morley KL,Jiang Y,Cheeseman JD,Purpero V,Schrag JD,Kazlauskas RJ

    更新日期:2010-03-09 00:00:00

  • Synthesis and properties of azidonitrophenyl pyrophosphate, a photoaffinity probe of the nucleotide binding sites of mitochondrial F1-ATPase.

    abstract::4-Azido-2-nitrophenyl pyrophosphate (azido-PPi) labeled with 32P in the alpha position was prepared and used to photolabel beef heart mitochondrial F1. Azido-PPi was hydrolyzed by yeast inorganic pyrophosphatase, but not by mitochondrial F1-ATPase. Incubation of F1 with [alpha-32P]azido-PPi in the dark under condition...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00452a021

    authors: Michel L,Garin J,Issartel JP,Vignais PV

    更新日期:1989-12-26 00:00:00

  • Substrate specificity of homogeneous monkeypox virus uracil-DNA glycosylase.

    abstract::Weak or nonexistent smallpox immunity in today's human population raises concerns about the possibility of natural or provoked genetic modifications leading to re-emergence of variola virus and other poxviruses. Thus, the development of new antiviral strategies aimed at poxvirus infections in humans is a high priority...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700726a

    authors: Duraffour S,Ishchenko AA,Saparbaev M,Crance JM,Garin D

    更新日期:2007-10-23 00:00:00

  • Structural polymorphism and dynamism in the DNA segment GATCTTCCCCCCGGAA: NMR investigations of hairpin, dumbbell, nicked duplex, parallel strands, and i-motif.

    abstract::Structure and dynamism in a DNA segment d-GATCTTCCCCCCGGAA have been investigated by nuclear magnetic resonance (NMR) spectroscopy. At neutral pH, the molecule exists largely as a dumbbell, formed by the association of two hairpins with sticky ends. A small percentage of hairpin is also detectable. The stem of the dum...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970819y

    authors: Singh S,Patel PK,Hosur RV

    更新日期:1997-10-28 00:00:00

  • Studies of the cryptic allylic pyrophosphate isomerase activity of trichodiene synthase using the anomalous substrate 6,7-dihydrofarnesyl pyrophosphate.

    abstract::Two enantiomeric analogues of farnesyl pyrophosphate (1) were tested as inhibitors and anomalous substrates of trichodiene synthase, which catalyzes the cyclization of trans,trans-farnesyl pyrophosphate (1) to the sesquiterpene hydrocarbon trichodiene (2). The reaction has been shown to involve preliminary isomerizati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00475a011

    authors: Cane DE,Pawlak JL,Horak RM

    更新日期:1990-06-12 00:00:00

  • Pressure effects and thermal stability of myosin rods and rod minifilaments: fluorescence and circular dichroism studies.

    abstract::In the present study hydrostatic pressure was applied upon both skeletal myosin rod molecules and rod minifilaments to learn more of the intra- and intermolecular interaction behavior of myosin. Applied pressure disassembled the rod minifilaments into individual rod molecules and dissociated each myosin rod molecule i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00184a028

    authors: King L,Liu CC,Lee RF

    更新日期:1994-05-10 00:00:00

  • NMR localization of divalent cations at the active site of the Neurospora VS ribozyme provides insights into RNA-metal-ion interactions.

    abstract::Metal cations represent key elements of RNA structure and function. In the Neurospora VS ribozyme, metal cations play diverse roles; they are important for substrate recognition, formation of the active site, and shifting the pKa's of two key nucleobases that contribute to the general acid-base mechanism. Recently, we...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401484a

    authors: Bonneau E,Legault P

    更新日期:2014-01-28 00:00:00

  • Acetylcholine receptors in normal and denervated rat diaphragm muscle. I. Purification and interaction with [125I]-alpha-bungarotoxin.

    abstract::Acetylcholine receptors have been purified from junctional regions of normal rat diaphragm muscle and from extrajunctional regions of denervated diaphragm. The reaction of purified receptors with [122I]-alpha-bungarotoxin has been investigated by kinetic methods. The toxin-receptor complexes dissociated in a biphasic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00681a008

    authors: Brockes JP,Hall ZW

    更新日期:1975-05-20 00:00:00

  • The Display of Single-Domain Antibodies on the Surfaces of Connectosomes Enables Gap Junction-Mediated Drug Delivery to Specific Cell Populations.

    abstract::Gap junctions, transmembrane protein channels that directly connect the cytoplasm of neighboring cells and enable the exchange of molecules between cells, are a promising new frontier for therapeutic delivery. Specifically, cell-derived lipid vesicles that contain functional gap junction channels, termed Connectosomes...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00688

    authors: Gadok AK,Zhao C,Meriwether AI,Ferrati S,Rowley TG,Zoldan J,Smyth HDC,Stachowiak JC

    更新日期:2018-01-09 00:00:00

  • Purification and characterization of CTP synthetase, the product of the URA7 gene in Saccharomyces cerevisiae.

    abstract::In the yeast Saccharomyces cerevisiae, CTP synthetase [EC 6.3.4.2; UTP:ammonia ligase (ADP-forming)] is the product of the URA7 gene. CTP synthetase was purified 503-fold to apparent homogeneity from cells bearing the URA7 gene on a multicopy plasmid that directed a 10-fold overproduction of the enzyme. The purificati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00201a028

    authors: Yang WL,McDonough VM,Ozier-Kalogeropoulos O,Adeline MT,Flocco MT,Carman GM

    更新日期:1994-09-06 00:00:00