Abstract:
:TaqMAMA combines the quantitative strengths of TaqMan with the allele-specific PCR of MAMA. In this article we develop TaqMAMA as a technique for screening human DNA samples for known genetic polymorphisms. In the first set of experiments, plasmids that model all types of genetic polymorphisms were used to understand the relationship between TaqMAMA primer/template mismatches and their strength of allelic discrimination. These data can be used to improve allelic discrimination of other primer extension genotyping methodologies through directed use of nucleotide mismatches. We used the data to derive a guide for TaqMAMA primer design and DNA strand selection for TaqMAMA genotyping assays. The guide was then used to develop assays for 11 known and novel human genetic polymorphisms. Genotypes were assigned quickly and accurately in all cases. TaqMAMA genotyping assays require minimal development time, have a high probability of success, produce reliable data that are straightforward to analyze, and are very cost-competitive.
journal_name
Genomicsjournal_title
Genomicsauthors
Li B,Kadura I,Fu DJ,Watson DEdoi
10.1016/j.ygeno.2003.08.005subject
Has Abstractpub_date
2004-02-01 00:00:00pages
311-20issue
2eissn
0888-7543issn
1089-8646pii
S0888754303002441journal_volume
83pub_type
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