Conformational preferences of the amylin nucleation site in SDS micelles: an NMR study.

Abstract:

:Human islet amyloid polypeptide (hIAPP), or amylin, is a 37 amino acid hormone secreted by pancreatic beta-cells. hIAPP constitutes approximately 90% of the amyloid deposits found in type II diabetic patients. It has been shown that the central region of the peptide (hIAPP(20-29)) constitutes the nucleation site for the amyloidogenic process with F23 playing a key role in the formation of the beta-pleated structures. In addition, it has been proposed that an important stage in the cytotoxicity of hIAPP is its interaction with the beta-cell membranes. As a first step toward the characterization of the interaction of hIAPP with cell membranes, we determined conformational preferences of hIAPP(20-29) in membrane-mimicking environments. We found that upon interacting with negatively charged micelles, the dominant conformation of hIAPP(20-29) is a distorted type I beta-turn centered on residues F23 and G24, with F23, A25, and I26 forming a small hydrophobic cluster that may facilitate the interaction of this peptide with the membrane bilayer. Moreover, we were able to elucidate the topological orientation of the peptide that is absorbed on the micelle surface, with the hydrophobic cluster oriented toward the hydrocarbon region of the micelles and both N- and C-termini exposed to the solvent.

journal_name

Biopolymers

journal_title

Biopolymers

authors

Mascioni A,Porcelli F,Ilangovan U,Ramamoorthy A,Veglia G

doi

10.1002/bip.10305

subject

Has Abstract

pub_date

2003-05-01 00:00:00

pages

29-41

issue

1

eissn

0006-3525

issn

1097-0282

journal_volume

69

pub_type

杂志文章
  • Surface-enhanced Raman spectroscopy of DOPA-containing peptides related to adhesive protein of marine mussel, Mytilus edulis.

    abstract::The common blue marine mussel adheres to underwater surfaces using an adhesive protein (Mefp-1) extruded from its foot. This highly hydroxylated protein contains a number of unusual amino acids, including 3,4-dihydroxyphenylalanine (DOPA), which is thought to contribute to the crosslinking of the extruded threads and ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(2000)57:2<92::AID-BIP6>3.0

    authors: Akemi Ooka A,Garrell RL

    更新日期:2000-01-01 00:00:00

  • A fluorescence and CD study on the interaction of synthetic lipophilic hepatitis B virus preS(120-145) peptide analogues with phospholipid vesicles.

    abstract::The interaction of the immunogenic peptide of human hepatitis B virus (HBV) preS(120-145), including B and T epitopes, with phospholipid vesicles has been studied by fluorescence techniques and CD. In addition, interaction of three lipopeptides derived from preS(120-145) containing stearoyl, cholanoyl, and tripalmitoy...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0282(199605)38:5<607::aid-bip6>

    authors: Cajal Y,Rabanal F,Alsina MA,Reig F

    更新日期:1996-05-01 00:00:00

  • Binding of phenol to R6 insulin hexamers.

    abstract::Small amounts of phenolic compounds are being used as preservatives in pharmaceutical insulin preparations. It has been shown previously that these compounds bind to specific sites on the insulin hexamer and act as allosteric effectors, inducing a transformation of the T6 hexamer to the R6 hexamer, via a T3R3 intermed...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(1999)51:2<165::AID-BIP6>3.

    authors: Berchtold H,Hilgenfeld R

    更新日期:1999-01-01 00:00:00

  • Host defense peptides: an alternative as antiinfective and immunomodulatory therapeutics.

    abstract::Host defense peptides are conserved components of innate immune response present among all classes of life. These peptides are potent, broad spectrum antimicrobial agents with potential as novel therapeutic compounds. Also, the ability of host defense peptides to modulate immunity is an emerging therapeutic concept si...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22076

    authors: Alba A,López-Abarrategui C,Otero-González AJ

    更新日期:2012-01-01 00:00:00

  • Biophysical characterization and unfolding of LEF4 factor of RNA polymerase from AcNPV.

    abstract::Late expression factor 4 (LEF4) is one of the four subunits of Autographa californica nuclear polyhedrosis virus (AcNPV) RNA polymerase. LEF4 was overexpressed in Escherichia coli and recombinant protein was subjected to structural characterization. Chemical induced unfolding of LEF4 was investigated using intrinsic f...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.21180

    authors: Rasheedi S,Suragani M,Haq SK,Ghosh S,Ehtesham NZ,Hasnain SE

    更新日期:2009-07-01 00:00:00

  • Influence of structure of human, rat, and bovine serum albumins on binding properties of photoactive drug hypericin.

    abstract::Fluorescence binding measurements and molecular modeling were employed to study the interaction of hypericin (Hyp) with human (HSA), rat (RSA), and bovine (BSA) serum albumins. Fluorescence emission data show the solubility of Hyp increasing in the order BSA, HSA, and RSA. Molecular modeling was used to construct the ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10110

    authors: Hritz J,Kascakova S,Ulicny J,Miskovsky P

    更新日期:2002-01-01 00:00:00

  • A small molecule--DNA binding landscape.

    abstract::This brief account traces the development of a "competition dialysis" method used to characterize the structural and sequence selectivity of DNA binding compounds. The method was inspired by a simple "differential dialysis" method pioneered by Don Crothers to explore base-selective intercalator binding. Results from c...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22660

    authors: Chaires JB

    更新日期:2015-09-01 00:00:00

  • Intermolecular Overhauser effects in fluoroalcohol solutions of cyclo-alanylglycine.

    abstract::Interactions between the diketopiperazine cyclo-alanylglycine and four fluorinated alcohols in water-fluoroalcohol mixtures were examined by (1)H[(19)F] intermolecular nuclear Overhauser effects (NOE) experiments. The alcohols studied were trifluoroethanol, hexafluoroacetone trihydrate, 1,1,1,3,3,3-hexafluoroisopropan...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10176

    authors: Strickler MA,Gerig JT

    更新日期:2002-08-15 00:00:00

  • A systematic approach toward the analysis of drug-DNA interactions using Raman spectroscopy: the binding of metal-free bleomycins A(2) and B(2) to calf thymus DNA.

    abstract::Bleomycins A(2) and B(2) are the two active components in the antineoplastic drug Blenoxane. DNA is targeted by this drug in cancer cells and the mode of action of this drug involves DNA binding. Ambiguity exists as to the way in which bleomycin binds to DNA. Raman spectroscopy was used to examine both calf thymus DNA...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/1097-0282(1999)52:3<110::AID-BIP20>3.0.CO;

    authors: Rajani C,Kincaid JR,Petering DH

    更新日期:1999-01-01 00:00:00

  • Expression and characterization of chimeric spidroins from flagelliform-aciniform repetitive modules.

    abstract::Spiders can produce up to seven different types of silks or glues with different mechanical properties. Of these, flagelliform (Flag) silk is the most elastic, and aciniform (AcSp1) silk is the toughest. To produce a chimeric spider silk (spidroin) FlagR -AcSp1R , we fused one repetitive module of flagelliform silk fr...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23404

    authors: Tian LY,Meng Q,Lin Y

    更新日期:2020-12-01 00:00:00

  • Pressure stability of the alpha-helix structure in a de novo designed protein (alpha-l-alpha)(2) studied by FTIR spectroscopy.

    abstract::The pressure-induced structural changes of a de novo designed four-helix bundle protein, (alpha-l-alpha)(2), in aqueous solution have been investigated by FTIR spectroscopy. Changes in the amide I' band intensity show that pressure induces disruption of tertiary interactions and stabilizes the solvated alpha-helical f...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20628

    authors: Takekiyo T,Takeda N,Isogai Y,Kato M,Taniguchi Y

    更新日期:2007-02-05 00:00:00

  • Biological activity of peptide-conjugated polyion complex matrices consisting of alginate and chitosan.

    abstract::Peptide-conjugated polysaccharide matrices using bioactive laminin-derived peptides are useful biomaterials for tissue and cell engineering. Here, we demonstrate an easy handling preparation method for peptide-polysaccharide matrices using polyion complex with both alginate and chitosan. First, aldehyde-alginate was s...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22983

    authors: Fujimori C,Kumai J,Nakamura K,Gu Y,Katagiri F,Hozumi K,Kikkawa Y,Nomizu M

    更新日期:2017-01-01 00:00:00

  • Peptides as transmembrane segments: decrypting the determinants for helix-helix interactions in membrane proteins.

    abstract::Although the structural analysis of membrane proteins is advancing, an understanding of the basic principles that underlie their folding and assembly remains limited because of the high insolubility intrinsic to these molecules and concomitant challenges in obtaining crystals. Fortunately, from an experimental standpo...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20668

    authors: Rath A,Johnson RM,Deber CM

    更新日期:2007-01-01 00:00:00

  • Structural and dynamic consequences of increasing repeats in a MUC1 peptide tumor antigen.

    abstract::MUC1 mucin is a large transmembrane glycoprotein whose extracelluler domain is composed of repeating units of a 20 amino acid sequence. In the cancer associated state, this protein expression becomes upregulated and underglycosylated. Previous studies, which show an enhanced binding of a 5-repeat over a 1-repeat MUC1 ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20190

    authors: Schuman JT,Grinstead JS,Apostolopoulos V,Campbell AP

    更新日期:2005-02-05 00:00:00

  • Identification of neuropeptide Y cleavage products in human blood to improve metabolic stability.

    abstract::Regulatory, receptor-binding peptides are considered as the agents of choice for diagnostic imaging and therapy of cancers, because their receptors are overexpressed in various human cancer cells. It has been recently indicated that there is a putative role of NPY in breast tumors. The expression of the two best-inves...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20666

    authors: Khan IU,Reppich R,Beck-Sickinger AG

    更新日期:2007-01-01 00:00:00

  • The serine palmitoyltransferase from Sphingomonas wittichii RW1: An interesting link to an unusual acyl carrier protein.

    abstract::Serine palmitoyltransferase (SPT) catalyses the first step in the de novo biosynthesis of sphingolipids (SLs). It uses a decarboxylative Claisen-like condensation reaction to couple L-serine with palmitoyl-CoA to generate a long-chain base product, 3-ketodihydrosphingosine. SLs are produced by mammals, plants, yeast, ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.21482

    authors: Raman MC,Johnson KA,Clarke DJ,Naismith JH,Campopiano DJ

    更新日期:2010-09-01 00:00:00

  • Synthesis and characterization of poly(dimer acid-brassylic acid) copolymer and poly(dimer acid-pentadecandioic acid) copolymer.

    abstract::Poly(dimer acid-brassylic acid) [P(DA-BA)] copolymers and poly(dimer acid-pentadecandioic acid) [P(DA-PA)] copolymers were prepared by melt polycondensation of the corresponding mixed anhydride prepolymers. The copolymers were characterized by Fourier transform infrared (FTIR), gel permeation chromatography (GPC), dif...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20078

    authors: Guo WX,Huang KX

    更新日期:2004-06-15 00:00:00

  • Use of Oxyma as pH modulatory agent to be used in the prevention of base-driven side reactions and its effect on 2-chlorotrityl chloride resin.

    abstract::The presence of low pKa N-hydroxylamines is beneficial in peptide chemistry as they reduce some base-mediated side reactions. Here we evaluated the applicability and buffering capacity of Ethyl 2-cyano-2-(hydroxyimino) acetate (Oxyma) in the prevention of aspartimide/piperidide formation and Pro-based overcoupling and...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.21713

    authors: Subirós-Funosas R,El-Faham A,Albericio F

    更新日期:2012-01-01 00:00:00

  • The structure of a rhombohedral R6 insulin hexamer that binds phenol.

    abstract::Different hexameric forms of insulin have been crystallized from a variety of conditions. In the presence of 1% phenol, 1.0 M sodium chloride, and at a pH of 8.5, a rhombohedral form is produced with two monomers in the asymmetric unit, space group R3, a = 79.92 A and c = 40.39 A. The structure has been solved and ref...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360320422

    authors: Smith GD,Dodson GG

    更新日期:1992-04-01 00:00:00

  • SAR study and conformational analysis of a series of novel peptide G protein-coupled receptor kinase 2 inhibitors.

    abstract::G protein-coupled receptor kinase 2 (GRK2) plays a central role in the cellular transduction network. In particular, during chronic heart failure GRK2 is upregulated and believed to contribute to disease progression. Thereby, its inhibition offers a potential therapeutic solution to several pathological conditions. In...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22295

    authors: Gomez-Monterrey I,Carotenuto A,Cipolletta E,Sala M,Vernieri E,Limatola A,Bertamino A,Musella S,Grieco P,Trimarco B,Novellino E,Iaccarino G,Campiglia P

    更新日期:2014-01-01 00:00:00

  • Active site structure and dynamics of cytochrome c3 from Desulfovibrio gigas immobilized on electrodes.

    abstract::Cytochrome c3 from Desulfovibrio gigas is electrostatically adsorbed on Ag electrodes coated with self-assembled monolayers (SAMs) of 11-mercaptoundecanoic acid. The redox equilibria and electron transfer dynamics of the adsorbed four-heme protein are studied by surface enhanced resonance Raman spectroscopy. Immobiliz...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10101

    authors: Simaan AJ,Murgida DH,Hildebrandt P

    更新日期:2002-01-01 00:00:00

  • Alpha-helix to random coil transitions: determination of peptide concentration from the CD at the isodichroic point.

    abstract::A method is presented for determining the concentrations of peptides and proteins having isodichroic points near 203 nm. The existence of an isodichroic point for a given substance indicates a local two-state (alpha-helix, random coil) population. The mean residue ellipticity at the isodichroic point, [theta lambda i]...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360321209

    authors: Holtzer ME,Holtzer A

    更新日期:1992-12-01 00:00:00

  • Molecular dynamic simulation studies on the effect of one residue chain staggering on the structure and stability of heterotrimeric collagen-like peptides with interruption.

    abstract::A systematic molecular dynamics (MD) simulation has been carried out on collagen-like peptides with different combinations of interruptions in the Gly-X(AA) -Y(AA) repeats. Although experimental studies have been carried out to elucidate the structural consequences of homotrimeric collagen-like peptides, this is the f...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22085

    authors: Singam ER,Balamurugan K,Gopalakrishnan R,Subramanian SR,Subramanian V,Ramasami T

    更新日期:2012-11-01 00:00:00

  • Investigation of the thermal stability of porin from Paracoccus denitrificans by site-directed mutagenesis and Fourier transform infrared spectroscopy.

    abstract::The folding of membrane proteins was addressed using outer membrane protein porin from the soil bacterium Paracoccus denitrificans (P. den.). IR spectroscopy and sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis were used to probe the effect of mutagenesis on the thermal stability of the pr...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20049

    authors: Sukumaran S,Zscherp C,Mäntele W

    更新日期:2004-05-01 00:00:00

  • Raman signatures of ligand binding and allosteric conformation change in hexameric insulin.

    abstract::Hexameric insulin is an allosteric protein that undergoes transitions between three conformational states (T(6), T(3)R(3), and R(6)). These allosteric states are stabilized by the binding of ligands to the phenolic pockets and by the coordination of anions to the His B10 metal sites. Raman difference (RD) spectroscopy...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.1020

    authors: Ferrari D,Diers JR,Bocian DF,Kaarsholm NC,Dunn MF

    更新日期:2001-01-01 00:00:00

  • CD of the synthetic RNA duplexes poly[r(A-T)] and poly[r(A-U)] in salt and ethanolic solutions.

    abstract::Synthetic RNA poly[r(A-T)] has been synthesized and its CD spectral properties compared to those of poly[r(A-U)], poly[d(A-T)], and poly[d(A-U)] in various salt and ethanolic solutions. The CD spectra of poly[r(A-T)] in an aqueous buffer and of poly[d(A-T)] in 70.8% v/v ethanol are very similar, suggesting that they b...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360290210

    authors: Vorlícková M,Kypr J,Jovin TM,Planck M

    更新日期:1990-02-05 00:00:00

  • De novo design of α,β-didehydrophenylalanine containing peptides: from models to applications.

    abstract::The de novo design of peptides and proteins has emerged as an approach for investigating protein structure and function. The success relies heavily on the ability to design relatively short peptides that can adopt stable secondary structures. To this end, substitution with α,β-dehydroamino acids, especially α,β-didehy...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.21561

    authors: Gupta M,Chauhan VS

    更新日期:2011-03-01 00:00:00

  • Acid wash in determining cellular uptake of Fab/cell-permeating peptide conjugates.

    abstract::Successful intracellular delivery of various bioactive molecules has been reported using cell-permeating peptides (CPPs) as delivery vectors. To determine the effects of CPPs on the cellular uptake of immunoglobulin Fab fragment, conjugates of a radio-iodinated Fab fragment with CPPs (CPP-(125)I-Fab) derived from HIV-...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20689

    authors: Kameyama S,Horie M,Kikuchi T,Omura T,Tadokoro A,Takeuchi T,Nakase I,Sugiura Y,Futaki S

    更新日期:2007-01-01 00:00:00

  • Effect of biogenic amines on oxidation of farmorubicin by Fenton-like reagents.

    abstract::The aim of this study was to investigate the effect of dopa and catecholamines on the generation of oxygen active species during oxidation of farmorubicin by "Fenton-like" reagents using chemiluminescent and spectrophotometric techniques. The tested catechols were found to reduce the light emission accompanying oxidat...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10161

    authors: Kruk I,Lichszteld K,Aboul-Enein HY

    更新日期:2002-01-01 00:00:00

  • Capturing the portrait of isolated individual natural cellulose molecules.

    abstract::Natural cellulose molecules have a strong tendency of being aggregated into larger structures. Thus, the imaging of isolated individual cellulose molecules is hampered for a long time. In this work, we manage to observe, for the first time, the isolated individual natural cellulose chains on a sample surface by means ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.21070

    authors: Wan Z,Li L,Cui S

    更新日期:2008-12-01 00:00:00