Biological functions of the ISWI chromatin remodeling complex NURF.

Abstract:

:The nucleosome remodeling factor (NURF) is one of several ISWI-containing protein complexes that catalyze ATP-dependent nucleosome sliding and facilitate transcription of chromatin in vitro. To establish the physiological requirements of NURF, and to distinguish NURF genetically from other ISWI-containing complexes, we isolated mutations in the gene encoding the large NURF subunit, nurf301. We confirm that NURF is required for transcription activation in vivo. In animals lacking NURF301, heat-shock transcription factor binding to and transcription of the hsp70 and hsp26 genes are impaired. Additionally, we show that NURF is required for homeotic gene expression. Consistent with this, nurf301 mutants recapitulate the phenotypes of Enhancer of bithorax, a positive regulator of the Bithorax-Complex previously localized to the same genetic interval. Finally, mutants in NURF subunits exhibit neoplastic transformation of larval blood cells that causes melanotic tumors to form.

journal_name

Genes Dev

journal_title

Genes & development

authors

Badenhorst P,Voas M,Rebay I,Wu C

doi

10.1101/gad.1032202

subject

Has Abstract

pub_date

2002-12-15 00:00:00

pages

3186-98

issue

24

eissn

0890-9369

issn

1549-5477

journal_volume

16

pub_type

杂志文章
  • Foxp1 regulation of neonatal vocalizations via cortical development.

    abstract::The molecular mechanisms driving brain development at risk in autism spectrum disorders (ASDs) remain mostly unknown. Previous studies have implicated the transcription factor FOXP1 in both brain development and ASD pathophysiology. However, the specific molecular pathways both upstream of and downstream from FOXP1 ar...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.305037.117

    authors: Usui N,Araujo DJ,Kulkarni A,Co M,Ellegood J,Harper M,Toriumi K,Lerch JP,Konopka G

    更新日期:2017-10-15 00:00:00

  • Purification and characterization of mSin3A-containing Brg1 and hBrm chromatin remodeling complexes.

    abstract::Alteration of nucleosomes by ATP-dependent remodeling complexes represents a critical step in the regulation of transcription. The human SWI/SNF (hSWI/SNF) family is composed of complexes that contain either Brg1 or hBrm as the central ATPase; however, these separate complexes have not been compared functionally. Here...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.872801

    authors: Sif S,Saurin AJ,Imbalzano AN,Kingston RE

    更新日期:2001-03-01 00:00:00

  • The cohesin complex and its roles in chromosome biology.

    abstract::Cohesin is a chromosome-associated multisubunit protein complex that is highly conserved in eukaryotes and has close homologs in bacteria. Cohesin mediates cohesion between replicated sister chromatids and is therefore essential for chromosome segregation in dividing cells. Cohesin is also required for efficient repai...

    journal_title:Genes & development

    pub_type: 杂志文章,评审

    doi:10.1101/gad.1724308

    authors: Peters JM,Tedeschi A,Schmitz J

    更新日期:2008-11-15 00:00:00

  • Transcriptional coactivators PGC-1alpha and PGC-lbeta control overlapping programs required for perinatal maturation of the heart.

    abstract::Oxidative tissues such as heart undergo a dramatic perinatal mitochondrial biogenesis to meet the high-energy demands after birth. PPARgamma coactivator-1 (PGC-1) alpha and beta have been implicated in the transcriptional control of cellular energy metabolism. Mice with combined deficiency of PGC-1alpha and PGC-1beta ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1661708

    authors: Lai L,Leone TC,Zechner C,Schaeffer PJ,Kelly SM,Flanagan DP,Medeiros DM,Kovacs A,Kelly DP

    更新日期:2008-07-15 00:00:00

  • Isolation of a cDNA encoding the largest subunit of TFIIA reveals functions important for activated transcription.

    abstract::Transcription factor IIA has been shown to interact with the TATA-binding protein and to act early during preinitiation complex formation. The human factor is composed of three subunits (alpha, beta, gamma). A human cDNA clone encoding the largest subunit of TFIIA (alpha) was isolated. The recombinant alpha polypeptid...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.7.11.2246

    authors: Ma D,Watanabe H,Mermelstein F,Admon A,Oguri K,Sun X,Wada T,Imai T,Shiroya T,Reinberg D

    更新日期:1993-11-01 00:00:00

  • Identification of a new APC/C recognition domain, the A box, which is required for the Cdh1-dependent destruction of the kinase Aurora-A during mitotic exit.

    abstract::The mitotic kinase Aurora A (Aur-A) is required for formation of a bipolar mitotic spindle and accurate chromosome segregation. In somatic cells, Aur-A protein and kinase activity levels peak during mitosis, and Aur-A is degraded during mitotic exit. Here, we investigated how Aur-A protein and kinase activity levels a...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1007302

    authors: Littlepage LE,Ruderman JV

    更新日期:2002-09-01 00:00:00

  • Sex-specific regulation of the male-specific lethal-1 dosage compensation gene in Drosophila.

    abstract::Dosage compensation in Drosophila occurs by a twofold increase in transcription per copy of X-linked genes in males (XY) compared with females (XX). msl-1 is one of four genes that are essential for dosage compensation in males, and MSL-1 protein is associated specifically with the male X chromosome. To explore the ba...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.8.6.698

    authors: Palmer MJ,Richman R,Richter L,Kuroda MI

    更新日期:1994-03-15 00:00:00

  • A subtilisin-like serine protease involved in the regulation of stomatal density and distribution in Arabidopsis thaliana.

    abstract::Stomata are specialized cellular structures in the epidermis of aerial plant organs that control gas exchange (H(2)O release and CO(2) uptake) between leaves and the atmosphere by modulating the aperture of a pore flanked by two guard cells. Stomata are nonrandomly distributed, and their density is controlled by endog...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:

    authors: Berger D,Altmann T

    更新日期:2000-05-01 00:00:00

  • Dual pathways for induction of wingless expression by protein kinase A and Hedgehog in Drosophila embryos.

    abstract::The secreted Drosophila Hedgehog (Hh) protein induces transcription of specific genes by an unknown mechanism that requires the serpentine transmembrane protein Smoothened (Smo) and the transcription factor Cubitus interruptus (Ci). Protein kinase A (PKA) has been implicated in the mechanism of Hh signal transduction ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.11.17.2250

    authors: Ohlmeyer JT,Kalderon D

    更新日期:1997-09-01 00:00:00

  • Chromatin signatures of cancer.

    abstract::Changes in the pattern of gene expression play an important role in allowing cancer cells to acquire their hallmark characteristics, while genomic instability enables cells to acquire genetic alterations that promote oncogenesis. Chromatin plays central roles in both transcriptional regulation and the maintenance of g...

    journal_title:Genes & development

    pub_type: 杂志文章,评审

    doi:10.1101/gad.255182.114

    authors: Morgan MA,Shilatifard A

    更新日期:2015-02-01 00:00:00

  • Disruption of retinoblastoma protein function by coexpression of its C pocket fragment.

    abstract::The growth suppression function of the retinoblastoma protein (RB) is mediated by its interaction with a variety of cellular proteins. RB contains at least two protein-binding pockets: the large A/B pocket, which interacts with E2F and the D-type cyclins, and the C pocket, which interacts with the nuclear c-Abl tyrosi...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.9.1.31

    authors: Welch PJ,Wang JY

    更新日期:1995-01-01 00:00:00

  • Tissue-specific expression of the gene encoding hepatocyte nuclear factor 1 may involve hepatocyte nuclear factor 4.

    abstract::Hepatocyte nuclear factor 1 (HNF-1) is a transcriptional regulatory protein possibly involved in the activation of many liver-specifically expressed genes. HNF-1 mRNA is restricted to a small number of tissues, suggesting that the HNF-1 gene itself is regulated at the transcriptional level. We have isolated and charac...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.5.12a.2225

    authors: Tian JM,Schibler U

    更新日期:1991-12-01 00:00:00

  • Brachyury downstream notochord differentiation in the ascidian embryo.

    abstract::The ascidian tadpole represents the most simplified chordate body plan. It contains a notochord composed of just 40 cells, but as in vertebrates Brachyury is essential for notochord differentiation. Here, we show that the misexpression of the Brachyury gene (Ci-Bra) of Ciona intestinalis is sufficient to transform end...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.13.12.1519

    authors: Takahashi H,Hotta K,Erives A,Di Gregorio A,Zeller RW,Levine M,Satoh N

    更新日期:1999-06-15 00:00:00

  • Role of the hypothalamic-pituitary-thyroid axis in metabolic regulation by JNK1.

    abstract::The cJun N-terminal kinase 1 (JNK1) is implicated in diet-induced obesity. Indeed, germline ablation of the murine Jnk1 gene prevents diet-induced obesity. Here we demonstrate that selective deficiency of JNK1 in the murine nervous system is sufficient to suppress diet-induced obesity. The failure to increase body mas...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1878510

    authors: Sabio G,Cavanagh-Kyros J,Barrett T,Jung DY,Ko HJ,Ong H,Morel C,Mora A,Reilly J,Kim JK,Davis RJ

    更新日期:2010-02-01 00:00:00

  • Rpp1, an essential protein subunit of nuclear RNase P required for processing of precursor tRNA and 35S precursor rRNA in Saccharomyces cerevisiae.

    abstract::The gene for an essential protein subunit of nuclear RNase P from Saccharomyces cerevisiae has been cloned. The gene for this protein, RPP1, was identified by virtue of its homology with a human scleroderma autoimmune antigen, Rpp30, which copurifies with human RNase P. Epitope-tagged Rpp1 can be found in association ...

    journal_title:Genes & development

    pub_type: 更正并重新发布的文章,杂志文章

    doi:10.1101/gad.11.21.2926

    authors: Stolc V,Altman S

    更新日期:1997-11-01 00:00:00

  • Caenorhabditis elegans sex-determining protein FEM-2 is a protein phosphatase that promotes male development and interacts directly with FEM-3.

    abstract::Male sexual development in the nematode Caenorhabditis elegans requires the genes fem-1, fem-2, and fem-3. The current model of sex determination portrays the FEM proteins as components of a novel signal transduction pathway, but the mechanisms involved in signaling through the pathway are not understood. We report th...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.18.2314

    authors: Chin-Sang ID,Spence AM

    更新日期:1996-09-15 00:00:00

  • Stimulation of transcription by an Ultrabithorax protein in vitro.

    abstract::The Ultrabithorax (Ubx) gene of Drosophila melanogaster encodes a family of UBX proteins that are thought to specify the developmental fates of segments in the posterior thorax and anterior abdomen by controlling the expression of a set of target genes. UBX proteins bind DNA in vitro, and they activate or repress diff...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.6.1044

    authors: Johnson FB,Krasnow MA

    更新日期:1990-06-01 00:00:00

  • Expression of two members of the Wnt family during mouse development--restricted temporal and spatial patterns in the developing neural tube.

    abstract::The Wnt gene family encodes a group of cysteine-rich proteins implicated in intercellular signaling during several stages of vertebrate development. This family includes Wnt-1 and Wnt-3, both discovered as activated oncogenes in mouse mammary tumors. Here we describe the molecular cloning of an additional member of th...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.5.3.381

    authors: Roelink H,Nusse R

    更新日期:1991-03-01 00:00:00

  • The crystal structure of DR6 in complex with the amyloid precursor protein provides insight into death receptor activation.

    abstract::The amyloid precursor protein (APP) has garnered considerable attention due to its genetic links to Alzheimer's disease. Death receptor 6 (DR6) was recently shown to bind APP via the protein extracellular regions, stimulate axonal pruning, and inhibit synapse formation. Here, we report the crystal structure of the DR6...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.257675.114

    authors: Xu K,Olsen O,Tzvetkova-Robev D,Tessier-Lavigne M,Nikolov DB

    更新日期:2015-04-15 00:00:00

  • Gene encoding a morphogenic protein required in the assembly of the outer coat of the Bacillus subtilis endospore.

    abstract::Endospores of Bacillus subtilis are encased in a two-layer protein shell known as the coat, which consists of a lammellar-like inner layer and an electron-dense outer layer. We report the cloning of the structural gene (designated cotE) for an alkali-soluble coat protein of 24 kD and show that the cotE gene product is...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.2.8.1047

    authors: Zheng LB,Donovan WP,Fitz-James PC,Losick R

    更新日期:1988-08-01 00:00:00

  • Half helical turn spacing changes convert a frog into a mouse rDNA promoter: a distant upstream domain determines the helix face of the initiation site.

    abstract::Transcription of frog rDNA by mouse cell factors is the only documented exception to the observed species selectivity of rRNA gene expression. This heterologous transcription is authentic in that it uses the normal frog upstream and core promoter domains, as well as the normal mouse polymerase I transcription factors,...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.1.52

    authors: Pape LK,Windle JJ,Sollner-Webb B

    更新日期:1990-01-01 00:00:00

  • A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway.

    abstract::Binding of microRNA (miRNA) to mRNA within the RNA-induced silencing complex (RISC) leads to either translational inhibition or to destruction of the target mRNA. Both of these functions are executed by Argonaute 2 (Ago2). Using hematopoiesis in mice as a model system to study the physiological function of Ago2 in viv...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1565607

    authors: O'Carroll D,Mecklenbrauker I,Das PP,Santana A,Koenig U,Enright AJ,Miska EA,Tarakhovsky A

    更新日期:2007-08-15 00:00:00

  • RNAi in Xenopus: look before you leap.

    abstract::RNAi has revolutionized reverse genetics; however, RNAi is not necessarily ubiquitous or constitutive. Lund and colleagues (pp. 1121-1131) show that microRNA (miRNA) effector Argonautes (Agos) are limiting and easily saturated during early Xenopus embryogenesis. Moreover, this stage is devoid of slicing capacity. Supp...

    journal_title:Genes & development

    pub_type: 评论,杂志文章

    doi:10.1101/gad.2062911

    authors: Flynt AS,Lai EC

    更新日期:2011-06-01 00:00:00

  • Fgf-10 is required for both limb and lung development and exhibits striking functional similarity to Drosophila branchless.

    abstract::Fgf-10-deficient mice (Fgf-10(-/-)) were generated to determine the role(s) of Fgf-10 in vertebrate development. Limb bud initiation was abolished in Fgf-10(-/-) mice. Strikingly, Fgf-10(-/-) fetuses continued to develop until birth, despite the complete absence of both fore- and hindlimbs. Fgf-10 is necessary for api...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.20.3156

    authors: Min H,Danilenko DM,Scully SA,Bolon B,Ring BD,Tarpley JE,DeRose M,Simonet WS

    更新日期:1998-10-15 00:00:00

  • Expression of multiple novel Wnt-1/int-1-related genes during fetal and adult mouse development.

    abstract::The mammary tumor-associated proto-oncogene Wnt-1/int-1 encodes a secreted protein implicated in the regulation of neural development in vertebrates and segmental pattern in Drosophila. Using a PCR-based strategy, we isolated cDNAs encoding six novel, related proteins that are expressed in fetal mice. Predicted protei...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.12b.2319

    authors: Gavin BJ,McMahon JA,McMahon AP

    更新日期:1990-12-01 00:00:00

  • Conversion of a gene-specific repressor to a regional silencer.

    abstract::In Saccharomyces cerevisiae, gene silencing at the HMR and HML loci is normally dependent on Sir2p, Sir3p, and Sir4p, which are structural components of silenced chromatin. Sir2p is a NAD+-dependent histone deacetylase required for silencing. Silencing can be restored in cells lacking Sir proteins by a dominant mutati...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.873601

    authors: Rusché LN,Rine J

    更新日期:2001-04-15 00:00:00

  • Translational profiling of hypocretin neurons identifies candidate molecules for sleep regulation.

    abstract::Hypocretin (orexin; Hcrt)-containing neurons of the hypothalamus are essential for the normal regulation of sleep and wake behaviors and have been implicated in feeding, anxiety, depression, and reward. The absence of these neurons causes narcolepsy in humans and model organisms. However, little is known about the mol...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.207654.112

    authors: Dalal J,Roh JH,Maloney SE,Akuffo A,Shah S,Yuan H,Wamsley B,Jones WB,de Guzman Strong C,Gray PA,Holtzman DM,Heintz N,Dougherty JD

    更新日期:2013-03-01 00:00:00

  • Jmjd1a and Jmjd2c histone H3 Lys 9 demethylases regulate self-renewal in embryonic stem cells.

    abstract::Embryonic stem (ES) cells are pluripotent cells with the ability to self-renew indefinitely. These unique properties are controlled by genetic factors and chromatin structure. The exit from the self-renewing state is accompanied by changes in epigenetic chromatin modifications such as an induction in the silencing-ass...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1588207

    authors: Loh YH,Zhang W,Chen X,George J,Ng HH

    更新日期:2007-10-15 00:00:00

  • The role of disordered protein regions in the assembly of decapping complexes and RNP granules.

    abstract::The removal of the 5' cap structure by the decapping enzyme DCP2 inhibits translation and generally commits the mRNA to irreversible 5'-to-3' exonucleolytic degradation by XRN1. DCP2 catalytic activity is stimulated by DCP1, and these proteins form the conserved core of the decapping complex. Additional decapping fact...

    journal_title:Genes & development

    pub_type: 杂志文章,评审

    doi:10.1101/gad.227843.113

    authors: Jonas S,Izaurralde E

    更新日期:2013-12-15 00:00:00

  • Sequence-specific DNA binding of the B-cell-specific coactivator OCA-B.

    abstract::B-cell-specific transcription of immunoglobulin genes is mediated by the interaction of a POU domain containing transcription factor Oct-1 or Oct-2, with the B-cell-specific coactivator OCA-B (Bob-1, OBF-1) and a prototype octamer element. We find that OCA-B binds DNA directly in the major groove between the two subdo...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.16.2079

    authors: Cepek KL,Chasman DI,Sharp PA

    更新日期:1996-08-15 00:00:00