DNA replication-coupled inactivation of DnaA protein in vitro: a role for DnaA arginine-334 of the AAA+ Box VIII motif in ATP hydrolysis.

Abstract:

:The DnaA protein, which initiates chromosomal replication in Escherichia coli, is negatively regulated by both the sliding clamp of DNA polymerase III holoenzyme and the IdaB protein. We have found that, when the amount of minichromosome is limited in an in vitro replication system, minichromosomal replication-stimulated hydrolysis of DnaA-bound ATP yields the ADP-bound inactive form. The number of sliding clamps formed during replication was at least five per minichromosome, which is 2.7-fold higher than the number formed during incubation without replication. These results support the notion that coupling of DnaA-ATP hydrolysis to DNA replication is the outcome of enhanced clamp formation. We have also found that the amino acid substitution R334H in DnaA severely inhibits the hydrolysis of bound ATP in vitro. Whereas ATP bound to wild-type DnaA is hydrolysed in a DNA-dependent intrinsic manner or in a sliding clamp-dependent manner, ATP bound to DnaA R334H protein was resistant to hydrolysis under the same conditions. This arginine residue may be located in the vicinity where ATP binds, and therefore may play an essential role in ATP hydrolysis. This residue is highly conserved among DnaA homologues and also in the Box VIII motif of the AAA+ protein family.

journal_name

Mol Microbiol

journal_title

Molecular microbiology

authors

Su'etsugu M,Kawakami H,Kurokawa K,Kubota T,Takata M,Katayama T

doi

10.1046/j.1365-2958.2001.02378.x

subject

Has Abstract

pub_date

2001-04-01 00:00:00

pages

376-86

issue

2

eissn

0950-382X

issn

1365-2958

pii

mmi2378

journal_volume

40

pub_type

杂志文章
  • Cytological and biochemical characterization of the FtsA cell division protein of Bacillus subtilis.

    abstract::The actin-like protein FtsA is present in many eubacteria, and genetic experiments have shown that it plays an important, sometimes essential, role in cell division. Here, we show that Bacillus subtilis FtsA is targeted to division sites in both vegetative and sporulating cells. As in other organisms FtsA is probably ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2001.02356.x

    authors: Feucht A,Lucet I,Yudkin MD,Errington J

    更新日期:2001-04-01 00:00:00

  • Interaction of the sensor module of Mycobacterium tuberculosis H37Rv KdpD with members of the Lpr family.

    abstract::The genetic and biochemical mechanisms by which Mycobacterium tuberculosis senses and responds to the complex environment that it encounters during infection and persistence within the host remain unknown. In a number of bacterial species, the Kdp signal transduction pathway appears to be the primary response to envir...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03356.x

    authors: Steyn AJ,Joseph J,Bloom BR

    更新日期:2003-02-01 00:00:00

  • A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination.

    abstract::The S box transcription termination control system regulates expression of genes involved in methionine metabolism. Expression of the S box regulon, comprised of 11 transcriptional units in Bacillus subtilis, is induced in response to starvation for methionine. We previously demonstrated that S-adenosylmethionine (SAM...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2005.04740.x

    authors: McDaniel BA,Grundy FJ,Henkin TM

    更新日期:2005-08-01 00:00:00

  • Chromosomal constraints in Gram-positive bacteria revealed by artificial inversions.

    abstract::We used artificial chromosome inversions to investigate the chromosomal constraints that preserve genome organization in the Gram-positive bacterium Lactococcus lactis. Large inversions, 80-1260 kb in length, disturbing the symmetry of the origin and terminus of the replication axis to various extents, were constructe...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03847.x

    authors: Campo N,Dias MJ,Daveran-Mingot ML,Ritzenthaler P,Le Bourgeois P

    更新日期:2004-01-01 00:00:00

  • Genome-wide selection for increased copy number in Acinetobacter baylyi ADP1: locus and context-dependent variation in gene amplification.

    abstract::Renewed interest in gene amplification stems from its importance in evolution and a variety of medical problems ranging from drug resistance to cancer. However, amplified DNA segments (amplicons) are not fully characterized in any organism. Here we report a novel Acinetobacter baylyi system for genome-wide studies. Am...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2011.07945.x

    authors: Seaton SC,Elliott KT,Cuff LE,Laniohan NS,Patel PR,Neidle EL

    更新日期:2012-02-01 00:00:00

  • Requirement for RecFOR-mediated recombination in priA mutant.

    abstract::Restart of arrested replication forks is an important process and PriA, the main Escherichia coli replication restart protein, is essential for viability under any condition that increases the frequency of fork arrest. In priA mutant, replication forks are arrested by spontaneously occurring roadblocks and blocked rep...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.03997.x

    authors: Grompone G,Sanchez N,Dusko Ehrlich S,Michel B

    更新日期:2004-04-01 00:00:00

  • Role of the extracytoplasmic-function sigma factor sigma(H) in Mycobacterium tuberculosis global gene expression.

    abstract::Like other bacterial species, Mycobacterium tuberculosis has multiple sigma (sigma) factors encoded in its genome. In previously published work, we and others have shown that mutations in some of these transcriptional activators render M. tuberculosis sensitive to various environmental stresses and, in some cases, cau...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.03005.x

    authors: Manganelli R,Voskuil MI,Schoolnik GK,Dubnau E,Gomez M,Smith I

    更新日期:2002-07-01 00:00:00

  • A novel class of peptide pheromone precursors in ascomycetous fungi.

    abstract::Recently, sexual development in the heterothallic ascomycete Trichoderma reesei (anamorph of Hypocrea jecorina) has been achieved and thus initiated attempts to elucidate regulation and determinants of this process. While the α-type pheromone of this fungus fits the consensus known from other fungi, the assumed a-type...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07295.x

    authors: Schmoll M,Seibel C,Tisch D,Dorrer M,Kubicek CP

    更新日期:2010-09-01 00:00:00

  • Cell wall-anchored 5'-nucleotidases in Gram-positive cocci.

    abstract::5'-nucleotidases (5'-NTs) are enzymes that catalyze the hydrolysis of nucleoside monophosphates to produce nucleosides and phosphate. Since the identification of adenosine synthase A (AdsA) in Staphylococcus aureus in 2009, several other 5'-NTs have been discovered in Gram-positive cocci, mainly in streptococci. Despi...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/mmi.14442

    authors: Soh KY,Loh JMS,Proft T

    更新日期:2020-04-01 00:00:00

  • The gene for toxic shock toxin is carried by a family of mobile pathogenicity islands in Staphylococcus aureus.

    abstract::Tst, the gene for toxic shock syndrome toxin-1 (TSST-1), is part of a 15.2 kb genetic element in Staphylococcus aureus that is absent in TSST-1-negative strains. The prototype, in RN4282, is flanked by a 17 nucleotide direct repeat and contains genes for a second possible superantigen toxin, a Dichelobacter nodosus Va...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.00947.x

    authors: Lindsay JA,Ruzin A,Ross HF,Kurepina N,Novick RP

    更新日期:1998-07-01 00:00:00

  • Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein.

    abstract::The bacterial enhancer binding proteins (bEBP) are members of the AAA+ protein family and have a highly conserved 'DE' Walker B motif thought to be involved in the catalytic function of the protein with an active role in nucleotide hydrolysis. Based on detailed structural data, we analysed the functionality of the con...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2007.05901.x

    authors: Joly N,Rappas M,Wigneshweraraj SR,Zhang X,Buck M

    更新日期:2007-11-01 00:00:00

  • The holin of bacteriophage lambda forms rings with large diameter.

    abstract::Holins control the length of the infection cycle of tailed phages (the Caudovirales) by oligomerizing to form lethal holes in the cytoplasmic membrane at a time dictated by their primary structure. Nothing is currently known about the physical basis of their oligomerization or the structure of the oligomers formed by ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06298.x

    authors: Savva CG,Dewey JS,Deaton J,White RL,Struck DK,Holzenburg A,Young R

    更新日期:2008-08-01 00:00:00

  • Multiple drug resistance genes in malaria -- from epistasis to epidemiology.

    abstract::A decline in our ability to successfully treat patients with malaria infections of the parasitic protozoan Plasmodium falciparum with cheap quinoline drugs has led to a huge escalation in morbidity and mortality in recent years. Many approaches have been taken, including classical genetics, reverse genetics and molecu...

    journal_title:Molecular microbiology

    pub_type: 评论,杂志文章,评审

    doi:10.1111/j.1365-2958.2005.04748.x

    authors: Duraisingh MT,Refour P

    更新日期:2005-08-01 00:00:00

  • Identification, cloning and sequence analysis of the Bacillus sphaericus 1593 41.9 kD larvicidal toxin gene.

    abstract::A number of strains of the widespread aerobic soil bacterium, Bacillus sphaericus, possess crystalline inclusions of a toxin lethal to a variety of insect (larvae) which are vectors of major tropical diseases. Partial amino acid sequence data from one strain, B. sphaericus 2362 have permitted us to design oligonucleot...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1987.tb00511.x

    authors: Hindley J,Berry C

    更新日期:1987-09-01 00:00:00

  • Co-ordinated regulation of gluconate catabolism and glucose uptake in Corynebacterium glutamicum by two functionally equivalent transcriptional regulators, GntR1 and GntR2.

    abstract::Corynebacterium glutamicum is a Gram-positive soil bacterium that prefers the simultaneous catabolism of different carbon sources rather than their sequential utilization. This type of metabolism requires an adaptation of the utilization rates to the overall metabolic capacity. Here we show how two functionally redund...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2007.06020.x

    authors: Frunzke J,Engels V,Hasenbein S,Gätgens C,Bott M

    更新日期:2008-01-01 00:00:00

  • Purification and functional studies of a potent modified quorum-sensing peptide and a two-peptide bacteriocin in Streptococcus mutans.

    abstract::Bacteria use quorum-sensing signals or autoinducers to communicate. The signals in Gram-positive bacteria are often peptides activated by proteolytic removal of an N-terminal leader sequence. While investigating stimulation of antimicrobial peptide production by the Streptococcus mutans synthetic competence stimulatin...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2006.05312.x

    authors: Petersen FC,Fimland G,Scheie AA

    更新日期:2006-09-01 00:00:00

  • Amplified expression of a transcriptional pattern formed during development of Anabaena.

    abstract::The cyanobacterium Anabaena responds to nitrogen deprivation by producing heterocysts, cells specialized for nitrogen fixation, at well-spaced intervals along its filaments. The gene hepA, required for heterocyst maturation, is expressed in response to nitrogen deprivation, prior to visible differentiation. A spatial ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb01135.x

    authors: Wolk CP,Elhai J,Kuritz T,Holland D

    更新日期:1993-02-01 00:00:00

  • Evidence that acetyl phosphate functions as a global signal during biofilm development.

    abstract::We used DNA macroarray analysis to identify genes that respond to the status of the intracellular acetyl phosphate (acP) pool. Genes whose expression correlated negatively with the ability to synthesize acP (i.e. negatively regulated genes) function primarily in flagella biosynthesis, a result consistent with observat...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03457.x

    authors: Wolfe AJ,Chang DE,Walker JD,Seitz-Partridge JE,Vidaurri MD,Lange CF,Prüss BM,Henk MC,Larkin JC,Conway T

    更新日期:2003-05-01 00:00:00

  • Regulated, sequential processing by multiple proteases is required for proper maturation and release of Bordetella filamentous hemagglutinin.

    abstract::Filamentous hemagglutinin (FHA) is a critically important virulence factor produced by Bordetella species that cause respiratory infections in humans and other animals. It is also a prototypical member of the widespread two partner secretion (TPS) pathway family of proteins. First synthesized as a ~370 kDa protein cal...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14318

    authors: Nash ZM,Cotter PA

    更新日期:2019-09-01 00:00:00

  • Interspecies recombination, and phylogenetic distortions, within the glutamine synthetase and shikimate dehydrogenase genes of Neisseria meningitidis and commensal Neisseria species.

    abstract::Visual inspection showed clear evidence of a history of intraspecies recombinational exchanges within the neighbouring meningococcal shikimate dehydrogenase (aroE) and glutamine synthetase (glnA) genes, which was supported by the non-congruence of the trees constructed from the sequences of these genes from different ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1997.2681633.x

    authors: Zhou J,Bowler LD,Spratt BG

    更新日期:1997-02-01 00:00:00

  • Functional interplay between the Bacillus subtilis DnaD and DnaB proteins essential for initiation and re-initiation of DNA replication.

    abstract::Initiation and re-initiation of chromosomal DNA replication in bacteria rely on divergent multiprotein assemblies, which direct the functional delivery of the replicative helicase on single-stranded DNA (ssDNA) at specific sites. These two processes are triggered either at the single chromosomal origin oriC or at arre...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04451.x

    authors: Bruand C,Velten M,McGovern S,Marsin S,Sérèna C,Ehrlich SD,Polard P

    更新日期:2005-02-01 00:00:00

  • The nrfI gene is essential for the attachment of the active site haem group of Wolinella succinogenes cytochrome c nitrite reductase.

    abstract::The cytochrome c nitrite reductase complex (NrfHA) is the terminal enzyme in the electron transport chain catalysing nitrite respiration of Wolinella succinogenes. The catalytic subunit NrfA is a pentahaem cytochrome c containing an active site haem group which is covalently bound via the cysteine residues of a unique...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.02784.x

    authors: Pisa R,Stein T,Eichler R,Gross R,Simon J

    更新日期:2002-02-01 00:00:00

  • Characterization of anf genes specific for the alternative nitrogenase and identification of nif genes required for both nitrogenases in Rhodobacter capsulatus.

    abstract::To identify Rhodobacter capsulatus nif genes necessary for the alternative nitrogenase, strains carrying defined mutations in 32 genes and open reading frames of nif region A, B or C were constructed. The ability of these mutants to grow on nitrogen-free medium with molybdenum (Nif phenotype) or in a nifHDK deletion b...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb01611.x

    authors: Schüddekopf K,Hennecke S,Liese U,Kutsche M,Klipp W

    更新日期:1993-05-01 00:00:00

  • Agrobacterium type IV secretion is a two-step process in which export substrates associate with the virulence protein VirJ in the periplasm.

    abstract::Type IV secretion systems are virulence determinants in many bacteria and share extensive homology with many conjugal transfer systems. Although type IV systems and their homologues have been studied widely, the mechanism by which substrates are secreted remains unclear. In Agrobacterium, we show that type IV secretio...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.03098.x

    authors: Pantoja M,Chen L,Chen Y,Nester EW

    更新日期:2002-09-01 00:00:00

  • The merR regulatory gene in Thiobacillus ferrooxidans is spaced apart from the mer structural genes.

    abstract::Two distinct merR genes, which regulate expression of the mercuric ion resistance gene (mer), of Thiobacillus ferrooxidans strain E-15 have been cloned, sequenced and termed merR1 and merR2. As a result of gene walking around two merR genes, it was found that these two genes were quite close in distance. The nucleotid...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1991.tb01979.x

    authors: Inoue C,Sugawara K,Kusano T

    更新日期:1991-11-01 00:00:00

  • Multiple roles of Pseudomonas aeruginosa TBCF10839 PilY1 in motility, transport and infection.

    abstract::Polymorphonuclear neutrophils are the most important mammalian host defence cells against infections with Pseudomonas aeruginosa. Screening of a signature tagged mutagenesis library of the non-piliated P. aeruginosa strain TBCF10839 uncovered that transposon inactivation of its pilY1 gene rendered the bacterium more r...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06559.x

    authors: Bohn YS,Brandes G,Rakhimova E,Horatzek S,Salunkhe P,Munder A,van Barneveld A,Jordan D,Bredenbruch F,Häussler S,Riedel K,Eberl L,Jensen PØ,Bjarnsholt T,Moser C,Hoiby N,Tümmler B,Wiehlmann L

    更新日期:2009-02-01 00:00:00

  • Competitive activation of the Escherichia coli argO gene coding for an arginine exporter by the transcriptional regulators Lrp and ArgP.

    abstract::In vivo and in vitro analyses indicate that transcription of the argO gene coding for an arginine exporter is regulated by the global transcriptional regulator Lrp, an effect that went by unnoticed in previous genome-scale screenings of the Lrp regulatory network in Escherichia coli. Lrp activates the argO promoter fo...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2009.06950.x

    authors: Peeters E,Nguyen Le Minh P,Foulquié-Moreno M,Charlier D

    更新日期:2009-12-01 00:00:00

  • A well-conserved Plasmodium falciparum var gene shows an unusual stage-specific transcript pattern.

    abstract::The var multicopy gene family encodes Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) variant antigens, which, through their ability to adhere to a variety of host receptors, are thought to be important virulence factors. The predominant expression of a single cytoadherent PfEMP1 type on an infected red ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03505.x

    authors: Kyes SA,Christodoulou Z,Raza A,Horrocks P,Pinches R,Rowe JA,Newbold CI

    更新日期:2003-06-01 00:00:00

  • The GATA factor AreA regulates localization and in vivo binding site occupancy of the nitrate activator NirA.

    abstract::The GATA factor AreA is a wide-domain regulator in Aspergillus nidulans with transcriptional activation and chromatin remodelling functions. AreA interacts with the nitrate-specific Zn(2)-C(6) cluster protein NirA and both proteins cooperate to synergistically activate nitrate-responsive genes. We have previously esta...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2005.04957.x

    authors: Berger H,Pachlinger R,Morozov I,Goller S,Narendja F,Caddick M,Strauss J

    更新日期:2006-01-01 00:00:00

  • A bZIP protein from halophilic archaea: structural features and dimer formation of cGvpE from Halobacterium salinarum.

    abstract::The cGvpE protein of Halobacterium salinarum PHH4 has been identified as transcriptional activator for the promoter of the c-gvpA gene encoding the major gas vesicle structural protein cGvpA. Molecular modelling of the carboxy-terminal region of cGvpE suggests that this protein resembles a basic leucine-zipper protein...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.03031.x

    authors: Plösser P,Pfeifer F

    更新日期:2002-07-01 00:00:00