Identification and expression of isoflavone synthase, the key enzyme for biosynthesis of isoflavones in legumes.

Abstract:

:Isoflavones have drawn much attention because of their benefits to human health. These compounds, which are produced almost exclusively in legumes, have natural roles in plant defense and root nodulation. Isoflavone synthase catalyzes the first committed step of isoflavone biosynthesis, a branch of the phenylpropanoid pathway. To identify the gene encoding this enzyme, we used a yeast expression assay to screen soybean ESTs encoding cytochrome P450 proteins. We identified two soybean genes encoding isoflavone synthase, and used them to isolate homologous genes from other leguminous species including red clover, white clover, hairy vetch, mung bean, alfalfa, lentil, snow pea, and lupine, as well as from the nonleguminous sugarbeet. We expressed soybean isoflavone synthase in Arabidopsis thaliana, which led to production of the isoflavone genistein in this nonlegume plant. Identification of the isoflavone synthase gene should allow manipulation of the phenylpropanoid pathway for agronomic and nutritional purposes.

journal_name

Nat Biotechnol

journal_title

Nature biotechnology

authors

Jung W,Yu O,Lau SM,O'Keefe DP,Odell J,Fader G,McGonigle B

doi

10.1038/72671

subject

Has Abstract

pub_date

2000-02-01 00:00:00

pages

208-12

issue

2

eissn

1087-0156

issn

1546-1696

journal_volume

18

pub_type

杂志文章
  • Combinatorial polyketide biosynthesis by de novo design and rearrangement of modular polyketide synthase genes.

    abstract::Type I polyketide synthase (PKS) genes consist of modules approximately 3-6 kb long, which encode the structures of 2-carbon units in polyketide products. Alteration or replacement of individual PKS modules can lead to the biosynthesis of 'unnatural' natural products but existing techniques for this are time consuming...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1128

    authors: Menzella HG,Reid R,Carney JR,Chandran SS,Reisinger SJ,Patel KG,Hopwood DA,Santi DV

    更新日期:2005-09-01 00:00:00

  • Protein detection using proximity-dependent DNA ligation assays.

    abstract::The advent of in vitro DNA amplification has enabled rapid acquisition of genomic information. We present here an analogous technique for protein detection, in which the coordinated and proximal binding of a target protein by two DNA aptamers promotes ligation of oligonucleotides linked to each aptamer affinity probe....

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0502-473

    authors: Fredriksson S,Gullberg M,Jarvius J,Olsson C,Pietras K,Gústafsdóttir SM,Ostman A,Landegren U

    更新日期:2002-05-01 00:00:00

  • Continuous evolution of SpCas9 variants compatible with non-G PAMs.

    abstract::The targeting scope of Streptococcus pyogenes Cas9 (SpCas9) and its engineered variants is largely restricted to protospacer-adjacent motif (PAM) sequences containing G bases. Here we report the evolution of three new SpCas9 variants that collectively recognize NRNH PAMs (where R is A or G and H is A, C or T) using ph...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-020-0412-8

    authors: Miller SM,Wang T,Randolph PB,Arbab M,Shen MW,Huang TP,Matuszek Z,Newby GA,Rees HA,Liu DR

    更新日期:2020-04-01 00:00:00

  • Therapeutic silencing of miR-10b inhibits metastasis in a mouse mammary tumor model.

    abstract::MicroRNAs (miRNAs) are increasingly implicated in the regulation of metastasis. Despite their potential as targets for anti-metastatic therapy, miRNAs have only been silenced in normal tissues of rodents and nonhuman primates. Therefore, the development of effective approaches for sequence-specific inhibition of miRNA...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.1618

    authors: Ma L,Reinhardt F,Pan E,Soutschek J,Bhat B,Marcusson EG,Teruya-Feldstein J,Bell GW,Weinberg RA

    更新日期:2010-04-01 00:00:00

  • Statistical pattern matching facilitates the design of polyvalent inhibitors of anthrax and cholera toxins.

    abstract::Numerous biological processes involve the recognition of a specific pattern of binding sites on a target protein or surface. Although ligands displayed by disordered scaffolds form stochastic rather than specific patterns, theoretical models predict that recognition will occur between patterns that are characterized b...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1204

    authors: Rai P,Padala C,Poon V,Saraph A,Basha S,Kate S,Tao K,Mogridge J,Kane RS

    更新日期:2006-05-01 00:00:00

  • Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases.

    abstract::Genetic studies of human disease have traditionally focused on the detection of disease-causing mutations in afflicted individuals. Here we describe a complementary approach that seeks to identify healthy individuals resilient to highly penetrant forms of genetic childhood disorders. A comprehensive screen of 874 gene...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3514

    authors: Chen R,Shi L,Hakenberg J,Naughton B,Sklar P,Zhang J,Zhou H,Tian L,Prakash O,Lemire M,Sleiman P,Cheng WY,Chen W,Shah H,Shen Y,Fromer M,Omberg L,Deardorff MA,Zackai E,Bobe JR,Levin E,Hudson TJ,Groop L,Wang J,

    更新日期:2016-05-01 00:00:00

  • Glycosylase base editors enable C-to-A and C-to-G base changes.

    abstract::Current base editors (BEs) catalyze only base transitions (C to T and A to G) and cannot produce base transversions. Here we present BEs that cause C-to-A transversions in Escherichia coli and C-to-G transversions in mammalian cells. These glycosylase base editors (GBEs) consist of a Cas9 nickase, a cytidine deaminase...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-020-0592-2

    authors: Zhao D,Li J,Li S,Xin X,Hu M,Price MA,Rosser SJ,Bi C,Zhang X

    更新日期:2021-01-01 00:00:00

  • A dual-constriction biological nanopore resolves homonucleotide sequences with high fidelity.

    abstract::Single-molecule long-read DNA sequencing with biological nanopores is fast and high-throughput but suffers reduced accuracy in homonucleotide stretches. We now combine the CsgG nanopore with the 35-residue N-terminal region of its extracellular interaction partner CsgF to produce a dual-constriction pore with improved...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-020-0570-8

    authors: Van der Verren SE,Van Gerven N,Jonckheere W,Hambley R,Singh P,Kilgour J,Jordan M,Wallace EJ,Jayasinghe L,Remaut H

    更新日期:2020-12-01 00:00:00

  • Targeting by affinity-matured recombinant antibody fragments of an angiogenesis associated fibronectin isoform.

    abstract::The oncofetal fibronectin (B-FN) isoform is present in vessels of neoplastic tissues during angiogenesis but not in mature vessels. B-FN could therefore provide a target for diagnostic imaging and therapy of cancer. Phage display libraries have been used to isolate human antibody fragments with pan-species recognition...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1197-1271

    authors: Neri D,Carnemolla B,Nissim A,Leprini A,Querzè G,Balza E,Pini A,Tarli L,Halin C,Neri P,Zardi L,Winter G

    更新日期:1997-11-01 00:00:00

  • Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming.

    abstract::Current DNA methylation assays are limited in the flexibility and efficiency of characterizing a large number of genomic targets. We report a method to specifically capture an arbitrary subset of genomic targets for single-molecule bisulfite sequencing for digital quantification of DNA methylation at single-nucleotide...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.1530

    authors: Deng J,Shoemaker R,Xie B,Gore A,LeProust EM,Antosiewicz-Bourget J,Egli D,Maherali N,Park IH,Yu J,Daley GQ,Eggan K,Hochedlinger K,Thomson J,Wang W,Gao Y,Zhang K

    更新日期:2009-04-01 00:00:00

  • Efficient siRNA delivery into primary cells by a peptide transduction domain-dsRNA binding domain fusion protein.

    abstract::RNA interference (RNAi) induced by short interfering RNA (siRNA) allows for discovery research and large-scale screening; however, owing to their size and anionic charge, siRNAs do not readily enter cells. Current approaches do not deliver siRNAs into a high percentage of primary cells without cytotoxicity. Here we re...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.1541

    authors: Eguchi A,Meade BR,Chang YC,Fredrickson CT,Willert K,Puri N,Dowdy SF

    更新日期:2009-06-01 00:00:00

  • Best practices for benchmarking germline small-variant calls in human genomes.

    abstract::Standardized benchmarking approaches are required to assess the accuracy of variants called from sequence data. Although variant-calling tools and the metrics used to assess their performance continue to improve, important challenges remain. Here, as part of the Global Alliance for Genomics and Health (GA4GH), we pres...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-019-0054-x

    authors: Krusche P,Trigg L,Boutros PC,Mason CE,De La Vega FM,Moore BL,Gonzalez-Porta M,Eberle MA,Tezak Z,Lababidi S,Truty R,Asimenos G,Funke B,Fleharty M,Chapman BA,Salit M,Zook JM,Global Alliance for Genomics and Health Benchma

    更新日期:2019-05-01 00:00:00

  • Publisher Correction: Death by inflammation: drug makers chase the master controller.

    abstract::In the version of this article initially published, a GlaxoSmithKline compound referred to as GSK298559 was listed in Table 1 as a RIPK1 inhibitor in phase 1 trials for inflammatory bowel disease. The correct designation is GSK2983559; however, this compound is a RIPK2 inhibitor and thus should not have been included ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41587-019-0082-6

    authors: Sheridan C

    更新日期:2019-04-01 00:00:00

  • Publisher Correction: Federated discovery and sharing of genomic data using Beacons.

    abstract::In the version of this article initially published, Lena Dolman's second affiliation was given as Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. The correct second affiliation is Ontario Institute for Cancer Research, Toronto, Ontario, Canada. The error has been corrected in the HTML ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41587-019-0094-2

    authors: Fiume M,Cupak M,Keenan S,Rambla J,de la Torre S,Dyke SOM,Brookes AJ,Carey K,Lloyd D,Goodhand P,Haeussler M,Baudis M,Stockinger H,Dolman L,Lappalainen I,Törnroos J,Linden M,Spalding JD,Ur-Rehman S,Page A,Flicek P,

    更新日期:2019-04-01 00:00:00

  • Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing.

    abstract::Expansions of short tandem repeats are genetic variants that have been implicated in several neuropsychiatric and other disorders, but their assessment remains challenging with current polymerase-based methods1-4. Here we introduce a CRISPR-Cas-based enrichment strategy for nanopore sequencing combined with an algorit...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-019-0293-x

    authors: Giesselmann P,Brändl B,Raimondeau E,Bowen R,Rohrandt C,Tandon R,Kretzmer H,Assum G,Galonska C,Siebert R,Ammerpohl O,Heron A,Schneider SA,Ladewig J,Koch P,Schuldt BM,Graham JE,Meissner A,Müller FJ

    更新日期:2019-12-01 00:00:00

  • Almost in bloom.

    abstract::St. Louis wants to become a hub of agricultural biotechnology. All it needs is more start-ups and funds. ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0408-471

    authors: Marris E

    更新日期:2008-04-01 00:00:00

  • Author Correction: A male-biased sex-distorter gene drive for the human malaria vector Anopheles gambiae.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature biotechnology

    pub_type: 已发布勘误

    doi:10.1038/s41587-020-0658-1

    authors: Simoni A,Hammond AM,Beaghton AK,Galizi R,Taxiarchi C,Kyrou K,Meacci D,Gribble M,Morselli G,Burt A,Nolan T,Crisanti A

    更新日期:2020-09-01 00:00:00

  • Multi-omic measurements of heterogeneity in HeLa cells across laboratories.

    abstract::Reproducibility in research can be compromised by both biological and technical variation, but most of the focus is on removing the latter. Here we investigate the effects of biological variation in HeLa cell lines using a systems-wide approach. We determine the degree of molecular and phenotypic variability across 14...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-019-0037-y

    authors: Liu Y,Mi Y,Mueller T,Kreibich S,Williams EG,Van Drogen A,Borel C,Frank M,Germain PL,Bludau I,Mehnert M,Seifert M,Emmenlauer M,Sorg I,Bezrukov F,Bena FS,Zhou H,Dehio C,Testa G,Saez-Rodriguez J,Antonarakis SE,Hard

    更新日期:2019-03-01 00:00:00

  • Generation of higher affinity T cell receptors by antigen-driven differentiation of progenitor T cells in vitro.

    abstract::Many promising targets for T-cell-based cancer immunotherapies are self-antigens. During thymic selection, T cells bearing T cell receptors (TCRs) with high affinity for self-antigen are eliminated. The affinity of the remaining low-avidity TCRs can be improved to increase their antitumor efficacy, but conventional sa...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.4004

    authors: Schmitt TM,Aggen DH,Ishida-Tsubota K,Ochsenreither S,Kranz DM,Greenberg PD

    更新日期:2017-12-01 00:00:00

  • Insights into US public biotech sector using patenting trends.

    abstract::Analyzing patent data from 1995-2005 show the increasing importance of patenting by small and medium-sized biotech companies. ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0606-643

    authors: Aggarwal S,Gupta V,Bagchi-Sen S

    更新日期:2006-06-01 00:00:00

  • BMP4 initiates human embryonic stem cell differentiation to trophoblast.

    abstract::The excitement and controversy surrounding the potential role of human embryonic stem (ES) cells in transplantation therapy have often overshadowed their potentially more important use as a basic research tool for understanding the development and function of human tissues. Human ES cells can proliferate without a kno...

    journal_title:Nature biotechnology

    pub_type:

    doi:10.1038/nbt761

    authors: Xu RH,Chen X,Li DS,Li R,Addicks GC,Glennon C,Zwaka TP,Thomson JA

    更新日期:2002-12-01 00:00:00

  • Preventing gene silencing with human replicators.

    abstract::Transcriptional silencing, one of the major impediments to gene therapy in humans, is often accompanied by replication during late S-phase. We report that transcriptional silencing and late replication were prevented by DNA sequences that can initiate DNA replication (replicators). When replicators were included in si...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1202

    authors: Fu H,Wang L,Lin CM,Singhania S,Bouhassira EE,Aladjem MI

    更新日期:2006-05-01 00:00:00

  • Increased gibberellin biosynthesis in transgenic trees promotes growth, biomass production and xylem fiber length.

    abstract::In most tree-breeding programs worldwide, increasing the trees' growth rates and stem volumes and shortening their rotation times are important aims. Such trees would yield more biomass per unit area. Here we show that overexpressing a key regulatory gene in the biosynthesis of the plant hormone gibberellin (GA) in hy...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/77355

    authors: Eriksson ME,Israelsson M,Olsson O,Moritz T

    更新日期:2000-07-01 00:00:00

  • Inovio.

    abstract::A Pennsylvania company hopes to turn synthetic DNA vaccines into rapid response agents against flu epidemics and cancer. ...

    journal_title:Nature biotechnology

    pub_type: 新闻

    doi:10.1038/nbt0213-98

    authors: Rohn J

    更新日期:2013-02-01 00:00:00

  • Pulsed electric fields for selection of hematopoietic cells and depletion of tumor cell contaminants.

    abstract::Purging of tumor cells and selection of stem cells are key technologies for enabling stem cell transplantation and stem cell gene therapy. Here we report a strategy for cell selection based on physical properties of the cells. Exposing cells to an external pulsed electric field (PEF) increases the natural potential di...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/78504

    authors: Eppich HM,Foxall R,Gaynor K,Dombkowski D,Miura N,Cheng T,Silva-Arrieta S,Evans RH,Mangano JA,Preffer FI,Scadden DT

    更新日期:2000-08-01 00:00:00

  • Regulation of endogenous gene expression with a small-molecule dimerizer.

    abstract::Artificial transcription factors containing designer zinc-finger DNA-binding domains (DBDs) have been used to activate or repress expression of a growing number of endogenous genes. We have combined targeted zinc-finger DBD technology with a dimerizer-regulated gene expression system to permit the small-molecule contr...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0702-729

    authors: Pollock R,Giel M,Linher K,Clackson T

    更新日期:2002-07-01 00:00:00

  • Homologous recombination based modification in Escherichia coli and germline transmission in transgenic mice of a bacterial artificial chromosome.

    abstract::Escherichia coli-based artificial chromosomes have become important tools for physical mapping and sequencing in various genome projects. The lack of a general method to modify these large bacterial clones, however, has limited their utility in functional studies. We developed a simple method to modify bacterial artif...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0997-859

    authors: Yang XW,Model P,Heintz N

    更新日期:1997-09-01 00:00:00

  • High-throughput genome scaffolding from in vivo DNA interaction frequency.

    abstract::Despite advances in DNA sequencing technology, assembly of complex genomes remains a major challenge, particularly for genomes sequenced using short reads, which yield highly fragmented assemblies. Here we show that genome-wide in vivo chromatin interaction frequency data, which are measurable with chromosome conforma...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.2768

    authors: Kaplan N,Dekker J

    更新日期:2013-12-01 00:00:00

  • Author Correction: Programmable RNA editing by recruiting endogenous ADAR using engineered RNAs.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature biotechnology

    pub_type: 已发布勘误

    doi:10.1038/s41587-019-0292-y

    authors: Qu L,Yi Z,Zhu S,Wang C,Cao Z,Zhou Z,Yuan P,Yu Y,Tian F,Liu Z,Bao Y,Zhao Y,Wei W

    更新日期:2019-11-01 00:00:00

  • TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets.

    abstract::Although mass spectrometry is well suited to identifying thousands of potential protein post-translational modifications (PTMs), it has historically been biased towards just a few. To measure the entire set of PTMs across diverse proteomes, software must overcome the dual challenges of covering enormous search spaces ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-019-0067-5

    authors: Devabhaktuni A,Lin S,Zhang L,Swaminathan K,Gonzalez CG,Olsson N,Pearlman SM,Rawson K,Elias JE

    更新日期:2019-04-01 00:00:00