Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance.

Abstract:

:I reexamine the use of isolation by distance models as a basis for the estimation of demographic parameters from measures of population subdivision. To that aim, I first provide results for values of F-statistics in one-dimensional models and coalescence times in two-dimensional models, and make more precise earlier results for F-statistics in two-dimensional models and coalescence times in one-dimensional models. Based on these results, I propose a method of data analysis involving the regression of FST/(1-FST) estimates for pairs of subpopulations on geographic distance for populations along linear habitats or logarithm of distance for populations in two-dimensional habitats. This regression provides in principle an estimate of the product of population density and second moment of parental axial distance. In two cases where comparison to direct estimates is possible, the method proposed here is more satisfactory than previous indirect methods.

journal_name

Genetics

journal_title

Genetics

authors

Rousset F

subject

Has Abstract

pub_date

1997-04-01 00:00:00

pages

1219-28

issue

4

eissn

0016-6731

issn

1943-2631

journal_volume

145

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Cis- and trans-regulatory mechanisms of gene expression in the ASJ sensory neuron of Caenorhabditis elegans.

    abstract::The identity of a given cell type is determined by the expression of a set of genes sharing common cis-regulatory motifs and being regulated by shared transcription factors. Here, we identify cis and trans regulatory elements that drive gene expression in the bilateral sensory neuron ASJ, located in the head of the ne...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.176172

    authors: González-Barrios M,Fierro-González JC,Krpelanova E,Mora-Lorca JA,Pedrajas JR,Peñate X,Chavez S,Swoboda P,Jansen G,Miranda-Vizuete A

    更新日期:2015-05-01 00:00:00

  • Spontaneous mutational effects on reproductive traits of arabidopsis thaliana.

    abstract::A study of spontaneous mutation in Arabidopsis thaliana was initiated from a single inbred Columbia founder; 120 lines were established and advanced 17 generations by single-seed descent. Here, we report an assay of reproductive traits in a random set of 40 lines from generations 8 and 17, grown together at the same t...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shaw RG,Byers DL,Darmo E

    更新日期:2000-05-01 00:00:00

  • Quantitative trait loci for sexual isolation between Drosophila simulans and D. mauritiana.

    abstract::Sexual isolating mechanisms that act before fertilization are often considered the most important genetic barriers leading to speciation in animals. While recent progress has been made toward understanding the genetic basis of the postzygotic isolating mechanisms of hybrid sterility and inviability, little is known ab...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.103.024364

    authors: Moehring AJ,Li J,Schug MD,Smith SG,deAngelis M,Mackay TF,Coyne JA

    更新日期:2004-07-01 00:00:00

  • Evidence that sisterless-a and sisterless-b are two of several discrete "numerator elements" of the X/A sex determination signal in Drosophila that switch Sxl between two alternative stable expression states.

    abstract::The primary signal for Drosophila sex determination is the number of X chromosomes relative to the number of sets of autosomes. The present report shows that the numerator of this X/A signal appears to be determined by the cumulative dose of a relatively limited number of discrete X-linked genetic elements, two of whi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Cline TW

    更新日期:1988-08-01 00:00:00

  • Apparent selection of enzyme alleles in laboratory populations of Drosophila.

    abstract::Twelve laboratory populations of recently collected Drosophila willistoni were begun with different frequencies of alleles at three enzyme loci, six populations at 25 degrees and six at 19 degrees . Periodic sampling of the populations allowed monitoring of the frequency changes in allozymes over time.-At Lap-5 (a loc...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Powell JR

    更新日期:1973-11-01 00:00:00

  • An exact sampling formula for the Wright-Fisher model and a solution to a conjecture about the finite-island model.

    abstract::An exact sampling formula for a Wright-Fisher population of fixed size N under the infinitely many neutral alleles model is deduced. This extends the Ewens formula for the configuration of a random sample to the case where the sample is drawn from a population of small size, that is, without the usual large-N and smal...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.077644

    authors: Lessard S

    更新日期:2007-10-01 00:00:00

  • Functional redundancy within roX1, a noncoding RNA involved in dosage compensation in Drosophila melanogaster.

    abstract::Drosophila melanogaster males dosage compensate by twofold upregulation of the expression of genes on their single X chromosome. This process requires at least five proteins and two noncoding RNAs, roX1 and roX2, which paint the male X chromosome. We used a deletion analysis to search for functional RNA domains within...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Stuckenholz C,Meller VH,Kuroda MI

    更新日期:2003-07-01 00:00:00

  • DNA polymorphism, haplotype structure and balancing selection in the Leavenworthia PgiC locus.

    abstract::A study of DNA polymorphism and divergence was conducted for the cytosolic phosphoglucose isomerase (PGI:E.C.5.3.1.9) gene of five species of the mustard genus Leavenworthia: Leavenworthia stylosa, L. alabamica, L. crassa, L. uniflora, and L. torulosa. Sequences of an internal 2.3-kb PgiC gene region spanning exons 6-...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Filatov DA,Charlesworth D

    更新日期:1999-11-01 00:00:00

  • Isolation of the GA-response mutant sly1 as a suppressor of ABI1-1 in Arabidopsis thaliana.

    abstract::Seed dormancy and germination in higher plants are partially controlled by the plant hormones abscisic acid (ABA) and gibberellic acid (GA). ABA establishes dormancy during embryo maturation, whereas GA breaks dormancy and induces germination. Previous attempts to identify GA response genes were confounded because GA ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Steber CM,Cooney SE,McCourt P

    更新日期:1998-06-01 00:00:00

  • Wolbachia infection and cytoplasmic incompatibility in Drosophila species.

    abstract::Forty-one stocks from 30 Drosophila species were surveyed for Wolbachia infection using PCR technology. D. sechellia and two strains of D. auraria were found to be infected and were tested for the expression of cytoplasmic incompatibility, along with D. ananassae and D. melanogaster strains, which are already known to...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bourtzis K,Nirgianaki A,Markakis G,Savakis C

    更新日期:1996-11-01 00:00:00

  • Dietary change and adaptive evolution of enamelin in humans and among primates.

    abstract::Scans of the human genome have identified many loci as potential targets of recent selection, but exploration of these candidates is required to verify the accuracy of genomewide scans and clarify the importance of adaptive evolution in recent human history. We present analyses of one such candidate, enamelin, whose p...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.077123

    authors: Kelley JL,Swanson WJ

    更新日期:2008-03-01 00:00:00

  • Geographical distribution of twelve transferrin alleles in black rats of Asia and Oceania.

    abstract::About 450 black rats (Rattus rattus) were collected from 25 localities in Asia and Oceania. Their serum transferrins were analyzed by a newly developed thin layer acrylamide gel electrophoresis accompanied with acrinol pretreatment, exhibiting 12 transferrin bands. Generally, Asian type rats (2N=42) had fast-moving tr...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Moriwaki K,Kato H,ImalH,Tsuchiya K,Yosida T

    更新日期:1975-02-01 00:00:00

  • Std1p (Msn3p) positively regulates the Snf1 kinase in Saccharomyces cerevisiae.

    abstract::The Snf1 protein kinase of the glucose signaling pathway in Saccharomyces cerevisiae is regulated by an autoinhibitory interaction between the regulatory and catalytic domains of Snf1p. Transitions between the autoinhibited and active states are controlled by an upstream kinase and the Reg1p-Glc7p protein phosphatase ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kuchin S,Vyas VK,Kanter E,Hong SP,Carlson M

    更新日期:2003-02-01 00:00:00

  • The Drosophila melanogaster translational repressor pumilio regulates neuronal excitability.

    abstract::Maintenance of proper neuronal excitability is vital to nervous system function and normal behavior. A subset of Drosophila mutants that exhibit altered behavior also exhibit defective motor neuron excitability, which can be monitored with electrophysiological methods. One such mutant is the P-element insertion mutant...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Schweers BA,Walters KJ,Stern M

    更新日期:2002-07-01 00:00:00

  • Lethal mutagenesis in viruses and bacteria.

    abstract::In this work we study how mutations that change physical properties of cell proteins (stability) affect population survival and growth. We present a model in which the genotype is presented as a set folding free energies of cell proteins. Mutations occur upon replication, so stabilities of some proteins in daughter ce...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.109.106492

    authors: Chen P,Shakhnovich EI

    更新日期:2009-10-01 00:00:00

  • Polymorphism and divergence at a Drosophila pseudogene locus.

    abstract::The larval cuticle protein (Lcp) cluster in Drosophila melanogaster contains four functional genes and a closely related pseudogene. A 630-bp fragment including the larval cuticle pseudogene locus (Lcp psi) was nucleotide sequenced in 10 strains of D. melanogaster and a 458-bp Lcp psi fragment from D. simulans was als...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Pritchard JK,Schaeffer SW

    更新日期:1997-09-01 00:00:00

  • Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes.

    abstract::Combined with a system for identifying each of the chromosomes in a genome, visualizing the location of individual genetic loci by fluorescence in situ hybridization (FISH) would aid in assembling physical and genetic maps. Previously, large genomic clones have been successfully used as FISH probes onto somatic chromo...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.065573

    authors: Lamb JC,Danilova T,Bauer MJ,Meyer JM,Holland JJ,Jensen MD,Birchler JA

    更新日期:2007-03-01 00:00:00

  • A novel mutation in DNA topoisomerase I of yeast causes DNA damage and RAD9-dependent cell cycle arrest.

    abstract::DNA topoisomerases, enzymes that alter the superhelicity of DNA, have been implicated in such critical cellular functions as transcription, DNA replication, and recombination. In the yeast Saccharomyces cerevisiae, a null mutation in the gene encoding topoisomerase I (TOP1) causes elevated levels of mitotic recombinat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Levin NA,Bjornsti MA,Fink GR

    更新日期:1993-04-01 00:00:00

  • A screen for mutations that suppress the phenotype of Drosophila armadillo, the beta-catenin homolog.

    abstract::During development signaling pathways coordinate cell fates and regulate the choice between cell survival or programmed cell death. The well-conserved Wingless/Wnt pathway is required for many developmental decisions in all animals. One transducer of the Wingless/Wnt signal is Armadillo/beta-catenin. Drosophila Armadi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Cox RT,McEwen DG,Myster DL,Duronio RJ,Loureiro J,Peifer M

    更新日期:2000-08-01 00:00:00

  • Nucleoporin FG domains facilitate mRNP remodeling at the cytoplasmic face of the nuclear pore complex.

    abstract::Directional export of messenger RNA (mRNA) protein particles (mRNPs) through nuclear pore complexes (NPCs) requires multiple factors. In Saccharomyces cerevisiae, the NPC proteins Nup159 and Nup42 are asymmetrically localized to the cytoplasmic face and have distinct functional domains: a phenylalanine-glycine (FG) re...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.164012

    authors: Adams RL,Terry LJ,Wente SR

    更新日期:2014-08-01 00:00:00

  • The effect of nonhomologous DNA sequences on interplasmidic recombination.

    abstract::The effect of nonhomologous DNA sequences at one or both sides of short genetic intervals on recombination within that interval was investigated, using an interplasmidic recombination system in Escherichia coli K-12. The recombining plasmids were derivatives of pBR322 and pACYC184, which share a 1330-nucleotide sequen...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Laban A,Silberstein Z,Cohen A

    更新日期:1984-09-01 00:00:00

  • Genetic analysis of yeast Yip1p function reveals a requirement for Golgi-localized rab proteins and rab-Guanine nucleotide dissociation inhibitor.

    abstract::Yip1p is the first identified Rab-interacting membrane protein and the founder member of the YIP1 family, with both orthologs and paralogs found in all eukaryotic genomes. The exact role of Yip1p is unclear; YIP1 is an essential gene and defective alleles severely disrupt membrane transport and inhibit ER vesicle budd...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.032888

    authors: Chen CZ,Calero M,DeRegis CJ,Heidtman M,Barlowe C,Collins RN

    更新日期:2004-12-01 00:00:00

  • Concerted evolution of two novel protein families in Caenorhabditis species.

    abstract::Among a large number of homologous gene clusters in C. elegans, two gene families that appear to undergo concerted evolution were studied in detail. Both gene families are nematode specific and encode small secreted proteins of unknown function. For both families in three Caenorhabditis species, concerted groups of ge...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.052746

    authors: Thomas JH

    更新日期:2006-04-01 00:00:00

  • Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci.

    abstract::Understanding which genes contribute to evolutionary change and the nature of the alterations in them are fundamental challenges in evolution. We analyzed regulatory and enzymatic genes in the maize anthocyanin pathway as related to the evolution of anthocyanin-pigmented kernels in maize from colorless kernels of its ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hanson MA,Gaut BS,Stec AO,Fuerstenberg SI,Goodman MM,Coe EH,Doebley JF

    更新日期:1996-07-01 00:00:00

  • Molecular Genetics of the ROSY-ACE Region of DROSOPHILA MELANOGASTER.

    abstract::Three hundred and fifteen kilobases of DNA from the rosy-Ace region on chromosome 3R of D. melanogaster have previously been cloned and extensively characterized. We describe the isolation of nine new deficiency mutants that break within the 315-kb interval. The position of these breakpoints on the DNA map was determi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Gausz J,Hall LM,Spierer A,Spierer P

    更新日期:1986-01-01 00:00:00

  • Fixation probability in a two-locus model by the ancestral recombination-selection graph.

    abstract::We use the ancestral influence graph (AIG) for a two-locus, two-allele selection model in the limit of a large population size to obtain an analytic approximation for the probability of ultimate fixation of a single mutant allele A. We assume that this new mutant is introduced at a given locus into a finite population...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.136309

    authors: Lessard S,Kermany AR

    更新日期:2012-02-01 00:00:00

  • The genetic structure of a tribal population, the Yanomama Indians. XIV. Clines and their interpretation.

    abstract::The Yanomama Indians are a South American tribe distributed over an irregular area approximately 200 X 300 miles. The gene frequencies observed at 12 loci in 47 villages within this area have been analyzed for the occurrence of clines. Apparently significant clines are observed for alleles of the Rh, MNSs, Kidd, Gm, I...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ward RH,Neel JV

    更新日期:1976-01-01 00:00:00

  • Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data.

    abstract::It has been hypothesized that the ratio of X-linked to autosomal sequence diversity is influenced by unequal sex ratios in Drosophila melanogaster populations. We conducted a genome scan of single nucleotide polymorphism (SNP) of 378 autosomal loci in a derived European population and of a subset of 53 loci in an ance...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.074922

    authors: Hutter S,Li H,Beisswanger S,De Lorenzo D,Stephan W

    更新日期:2007-09-01 00:00:00

  • Mutants of downy mildew resistance in Lactuca sativa (lettuce).

    abstract::As part of our investigation of disease resistance in lettuce, we generated mutants that have lost resistance to Bremia lactucae, the casual fungus of downy mildew. Using a rapid and reliable screen, we identified 16 distinct mutants of Latuca sativa that have lost activity of one of four different downy mildew resist...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Okubara PA,Anderson PA,Ochoa OE,Michelmore RW

    更新日期:1994-07-01 00:00:00

  • Inference of population history using a likelihood approach.

    abstract::We introduce an approach to revealing the likelihood of different population histories that utilizes an explicit model of sequence evolution for the DNA segment under study. Based on a phylogenetic tree reconstruction method we show that a Tamura-Nei model with heterogeneous mutation rates is a fair description of the...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Weiss G,von Haeseler A

    更新日期:1998-07-01 00:00:00