Resonance Raman spectra of bacteriorhodopsin's primary photoproduct: evidence for a distorted 13-cis retinal chromophore.

Abstract:

:We have obtained the resonance Raman spectrum of bacteriorhodopsin's primary photoproduct K with a novel low-temperature spinning sample technique. Purple membrane at 77 K is illuminated with spatially separated actinic (pump) and probe laser beams. The 514-nm pump beam produces a photostationary steady-state mixture of bacteriorhodopsin and K. This mixture is then rotated through the red (676 nm) probe beam, which selectively enhances the Raman scattering from K. The essential advantage of our successive pump-and-probe technique is that it prevents the fluorescence excited by the pump beam from masking the red probe Raman scattering. K exhibits strong Raman lines at 1516, 1294, 1194, 1012, 957, and 811 cm-1. The effects of C15 deuteration on K's fingerprint lines correlate well with those seen in 13-cis model compounds, indicating that K has a 13-cis chromophore. However, the presence of unusually strong "low-wavenumber" lines at 811 and 957 cm-1, attributable to hydrogen out-of-plane wags, indicates that the protein holds the chromophore in a distorted conformation after trans leads to cis isomerization.

authors

Braiman M,Mathies R

doi

10.1073/pnas.79.2.403

subject

Has Abstract

pub_date

1982-01-01 00:00:00

pages

403-7

issue

2

eissn

0027-8424

issn

1091-6490

journal_volume

79

pub_type

杂志文章
  • Effect of media presentations on willingness to commit to organ donation.

    abstract::We examine how presentations of organ donation cases in the media may affect people's willingness to sign organ donation commitment cards, donate the organs of a deceased relative, support the transition to an "opt-out" policy, or donate a kidney while alive. We found that providing identifying information about the p...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1703020114

    authors: Harel I,Kogut T,Pinchas M,Slovic P

    更新日期:2017-05-16 00:00:00

  • Oncogenic transformation by the tax gene of human T-cell leukemia virus type I in vitro.

    abstract::Human T-cell leukemia virus type I (HTLV-I) is a causative agent of adult T-cell leukemia (ATL). To elucidate the role of HTLV-I in leukemogenesis, we examined the biological activity of a defective HTLV-I provirus with the env-pX 3' long terminal repeat region cloned from leukemic cells of an ATL patient. Transfectio...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.3.1071

    authors: Tanaka A,Takahashi C,Yamaoka S,Nosaka T,Maki M,Hatanaka M

    更新日期:1990-02-01 00:00:00

  • Protein kinase C as a component of a nerve growth factor-sensitive phosphorylation system in PC12 cells.

    abstract::The treatment of PC12 cells with either nerve growth factor or phorbol 12-myristate 13-acetate caused a decrease in the phosphorylation of a soluble 100-kDa protein (Nsp100). After treatment with nerve growth factor, the activity of Ca2+/phospholipid-dependent protein kinase (protein kinase C) in the cytosol was incre...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.8.2353

    authors: Hama T,Huang KP,Guroff G

    更新日期:1986-04-01 00:00:00

  • CD4 memory T cells divide poorly in response to antigen because of their cytokine profile.

    abstract::Immunological memory is a hallmark of adaptive immunity, and understanding T cell memory will be central to the development of effective cell-mediated vaccines. The characteristics and functions of CD4 memory cells have not been well defined. Here we demonstrate that the increased size of the secondary response is sol...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0807449105

    authors: MacLeod MK,McKee A,Crawford F,White J,Kappler J,Marrack P

    更新日期:2008-09-23 00:00:00

  • Frequency modulation of neural oscillations according to visual task demands.

    abstract::Temporal integration in visual perception is thought to occur within cycles of occipital alpha-band (8-12 Hz) oscillations. Successive stimuli may be integrated when they fall within the same alpha cycle and segregated for different alpha cycles. Consequently, the speed of alpha oscillations correlates with the tempor...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1713318115

    authors: Wutz A,Melcher D,Samaha J

    更新日期:2018-02-06 00:00:00

  • Structure, function, and self-assembly of single network gyroid (I4132) photonic crystals in butterfly wing scales.

    abstract::Complex three-dimensional biophotonic nanostructures produce the vivid structural colors of many butterfly wing scales, but their exact nanoscale organization is uncertain. We used small angle X-ray scattering (SAXS) on single scales to characterize the 3D photonic nanostructures of five butterfly species from two fam...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0909616107

    authors: Saranathan V,Osuji CO,Mochrie SG,Noh H,Narayanan S,Sandy A,Dufresne ER,Prum RO

    更新日期:2010-06-29 00:00:00

  • Evidence that a guanine nucleotide-binding protein linked to a muscarinic receptor inhibits directly phospholipase C.

    abstract::The mechanism of phospholipase C regulation by inhibitory receptors was analyzed both in intact and in permeabilized rat thyroid cells (FRTL5). In this system, the muscarinic agonist carbachol inhibited phospholipase C, as indicated by the decrease in the basal levels of inositol 1,4,5-trisphosphate as well as by the ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.12.4889

    authors: Bizzarri C,Di Girolamo M,D'Orazio MC,Corda D

    更新日期:1990-06-01 00:00:00

  • Oxidative damage during aging targets mitochondrial aconitase.

    abstract::The mechanisms that cause aging are not well understood. The oxidative stress hypothesis proposes that the changes associated with aging are a consequence of random oxidative damage to biomolecules. We hypothesized that oxidation of specific proteins is critical in controlling the rate of the aging process. Utilizing ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.94.21.11168

    authors: Yan LJ,Levine RL,Sohal RS

    更新日期:1997-10-14 00:00:00

  • Use of site-directed mutagenesis to elucidate the role of arginine-166 in the catalytic mechanism of alkaline phosphatase.

    abstract::The guanidinium group of arginine-166 has been postulated to act as an electrophilic species during phosphorylation of alkaline phosphatase. Its role could be either to stabilize the developing negative charge on the oxygen of the leaving group or the pentacoordinate transition state or to help bind the -PO2-3 group. ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.12.4276

    authors: Butler-Ransohoff JE,Kendall DA,Kaiser ET

    更新日期:1988-06-01 00:00:00

  • Model for specific rescue of normal hepatocytes during methotrexate treatment of hepatic malignancy.

    abstract::We utilized the presence of hepatic receptors for galactose-terminal glycoproteins to achieve specific rescue of differentiated hepatocytes from methotrexate toxicity. This was accomplished by administration of a conjugate formed by covalent coupling of the methotrexate antagonist, folinic acid (leucovorin), to galact...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.10.3078

    authors: Wu GY,Wu CH,Stockert RJ

    更新日期:1983-05-01 00:00:00

  • Nanog binds to Smad1 and blocks bone morphogenetic protein-induced differentiation of embryonic stem cells.

    abstract::ES cells represent a valuable model for investigating early embryo development and hold promise for future regenerative medicine strategies. The self-renewal of pluripotent mouse ES cells has been shown to require extrinsic stimulation by the bone morphogenetic protein (BMP) and leukemia inhibitory factor signaling pa...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0506945103

    authors: Suzuki A,Raya Á,Kawakami Y,Morita M,Matsui T,Nakashima K,Gage FH,Rodríguez-Esteban C,Izpisúa Belmonte JC

    更新日期:2006-07-05 00:00:00

  • Role of the translocation partner in protection against AID-dependent chromosomal translocations.

    abstract::Chromosome translocations between Ig (Ig) and non-Ig genes are frequently associated with B-cell lymphomas in humans and mice. The best characterized of these is c-myc/IgH translocation, which is associated with Burkitt's lymphoma. These translocations are caused by activation-induced cytidine deaminase (AID), which p...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0908946107

    authors: Jankovic M,Robbiani DF,Dorsett Y,Eisenreich T,Xu Y,Tarakhovsky A,Nussenzweig A,Nussenzweig MC

    更新日期:2010-01-05 00:00:00

  • Agricultural intensification escalates future conservation costs.

    abstract::The supposition that agricultural intensification results in land sparing for conservation has become central to policy formulations across the tropics. However, underlying assumptions remain uncertain and have been little explored in the context of conservation incentive schemes such as policies for Reducing Emission...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1220070110

    authors: Phelps J,Carrasco LR,Webb EL,Koh LP,Pascual U

    更新日期:2013-05-07 00:00:00

  • Chlorophyll biosynthesis and assembly into chlorophyll-protein complexes in isolated developing chloroplasts.

    abstract::Isolated developing plastids from greening cucumber cotyledons or from photoperiodically grown pea seedlings incorporated (14)C-labeled 5-aminolevulinic acid (ALA) into chlorophyll (Chl). Incorporation was light dependent, enhanced by S-adenosylmethionine, and linear for 1 hr. The in vitro rate of Chl synthesis from A...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.82.16.5370

    authors: Bhaya D,Castelfranco PA

    更新日期:1985-08-01 00:00:00

  • The activated state of a sodium channel voltage sensor in a membrane environment.

    abstract::Direct structural insights on the fundamental mechanisms of permeation, selectivity, and gating remain unavailable for the Na(+) and Ca(2+) channel families. Here, we report the spectroscopic structural characterization of the isolated Voltage-Sensor Domain (VSD) of the prokaryotic Na(+) channel NaChBac in a lipid bil...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0914109107

    authors: Chakrapani S,Sompornpisut P,Intharathep P,Roux B,Perozo E

    更新日期:2010-03-23 00:00:00

  • Viral delivery of glial cell line-derived neurotrophic factor improves behavior and protects striatal neurons in a mouse model of Huntington's disease.

    abstract::Huntington's disease (HD) is a fatal, genetic, neurological disorder resulting from a trinucleotide repeat expansion in the gene that encodes for the protein huntingtin. These excessive repeats confer a toxic gain of function on huntingtin, which leads to the degeneration of striatal and cortical neurons and a devasta...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0508875103

    authors: McBride JL,Ramaswamy S,Gasmi M,Bartus RT,Herzog CD,Brandon EP,Zhou L,Pitzer MR,Berry-Kravis EM,Kordower JH

    更新日期:2006-06-13 00:00:00

  • The editing enzyme ADAR1 and the mRNA surveillance protein hUpf1 interact in the cell nucleus.

    abstract::Posttranscriptional regulation is an important step in the regulation of gene expression. In this article, we show an unexpected connection between two proteins that participate in different processes of posttranscriptional regulation that ensures the production of functional mRNA molecules. Specifically, we show that...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0710576105

    authors: Agranat L,Raitskin O,Sperling J,Sperling R

    更新日期:2008-04-01 00:00:00

  • Slab melting versus slab dehydration in subduction-zone magmatism.

    abstract::The second critical endpoint in the basalt-H(2)O system was directly determined by a high-pressure and high-temperature X-ray radiography technique. We found that the second critical endpoint occurs at around 3.4 GPa and 770 °C (corresponding to a depth of approximately 100 km in a subducting slab), which is much shal...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1010968108

    authors: Mibe K,Kawamoto T,Matsukage KN,Fei Y,Ono S

    更新日期:2011-05-17 00:00:00

  • Design of small molecules that target metal-A{beta} species and regulate metal-induced A{beta} aggregation and neurotoxicity.

    abstract::The accumulation of metal ions and amyloid-β (Aβ) aggregates found in the brain of patients with Alzheimer's disease (AD) has been suggested to be involved in AD pathogenesis. To investigate metal-Aβ-associated pathways in AD, development of chemical tools to target metal-Aβ species is desired. Only a few efforts, how...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1006091107

    authors: Choi JS,Braymer JJ,Nanga RP,Ramamoorthy A,Lim MH

    更新日期:2010-12-21 00:00:00

  • Stimulation of release of adrenal catecholamine by adenosine 3':5'-cyclic monophosphate and theophylline in the absence of extracellular Ca 2+ .

    abstract::Stimulation of catecholamine release was studied in the isolated adrenal of the cat during retrograde perfusion. Theophylline, adenosine 3':5'-cyclic monophosphate (cyclic AMP), and dibutyryl-cyclic AMP stimulated catecholamine release in adrenal chromaffin tissue; adenosine, 2'-AMP, 3'-AMP, and 5'-AMP were ineffectiv...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.69.4.834

    authors: Peach MJ

    更新日期:1972-04-01 00:00:00

  • Extrinsic Cotton effects characteristic of specific hapten-antibody interactions.

    abstract::The reversible binding of the haptens 2,4-dinitrophenyllysine (DNP-lysine) and 2,4,6-trinitrophenyllysine (TNP-lysine) to either the nitrophenyl-binding myeloma protein MOPC-315 or to pooled mouse anti-DNP or anti-TNP antibodies produces large and characteristic extrinsic Cotton effects (in the circular dichroic spect...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.68.10.2477

    authors: Glaser M,Singer SJ

    更新日期:1971-10-01 00:00:00

  • Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H.

    abstract::A plasmid that consists of an 812-base-pair segment containing the replication origin of plasmid ColE1 and of a 1240-base-pair segment containing a beta-lactamase gene has been constructed. The plasmid DNA has three principal sites where transcription is initiated in vitro. One is located in the ColE1 segment 555 nucl...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.77.5.2450

    authors: Itoh T,Tomizawa J

    更新日期:1980-05-01 00:00:00

  • ADP-ribosylation in inner membrane of rat liver mitochondria.

    abstract::NAD+ glycohydrolase activity is found at high levels in submitochondrial particles. It leads to the reaction products ADP-ribose, nicotinamide, and small amounts of 5'-AMP. Furthermore, submitochondrial particles catalyze the exchange reaction: [adenosine-14C]ADP-ribose + NAD+ in equilibrium [adenosine-14C]-NAD+ + ADP...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.11.3188

    authors: Richter C,Winterhalter KH,Baumhüter S,Lötscher HR,Moser B

    更新日期:1983-06-01 00:00:00

  • Activation of cAMP-response-element-binding protein (CREB) after focal cerebral ischemia stimulates neurogenesis in the adult dentate gyrus.

    abstract::New neurons are generated in adult mammalians and may contribute to repairing the brain after injury. Here, we show that the number of new neurons in the dentate gyrus of adult rats increased in cerebral ischemic stroke and correlated with activation of the cAMP-response-element-binding protein (CREB). Inhibition of e...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0401063101

    authors: Zhu DY,Lau L,Liu SH,Wei JS,Lu YM

    更新日期:2004-06-22 00:00:00

  • Symmetric coalescence of two hydraulic fractures.

    abstract::The formation of a fracture network is a key process for many geophysical and industrial practices from energy resource recovery to induced seismic management. We focus on the initial stage of a fracture network formation using experiments on the symmetric coalescence of two equal coplanar, fluid-driven, penny-shaped ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1809233115

    authors: O'Keeffe NJ,Zheng Z,Huppert HE,Linden PF

    更新日期:2018-10-09 00:00:00

  • Pinching a glass reveals key properties of its soft spots.

    abstract::It is now well established that glasses feature quasilocalized nonphononic excitations-coined "soft spots"-, which follow a universal [Formula: see text] density of states in the limit of low frequencies ω. All glass-specific properties, such as the dependence on the preparation protocol or composition, are encapsulat...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1919958117

    authors: Rainone C,Bouchbinder E,Lerner E

    更新日期:2020-03-10 00:00:00

  • The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5.

    abstract::In facultative photoperiodic flowering plants, noninductive photoperiods result in a delay in flowering, but such plants eventually flower, illustrating plasticity in an important developmental transition, flowering. The model plant, Arabidopsis, has a facultative photoperiod response. Although the inductive flowering...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1010834107

    authors: Kim DH,Sung S

    更新日期:2010-09-28 00:00:00

  • Rapid evolution of male-biased gene expression in Drosophila.

    abstract::A number of genes associated with sexual traits and reproduction evolve at the sequence level faster than the majority of genes coding for non-sex-related traits. Whole genome analyses allow this observation to be extended beyond the limited set of genes that have been studied thus far. We use cDNA microarrays to demo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1630690100

    authors: Meiklejohn CD,Parsch J,Ranz JM,Hartl DL

    更新日期:2003-08-19 00:00:00

  • White lines in L-edge x-ray absorption spectra and their implications for anomalous diffraction studies of biological materials.

    abstract::We have measured high-resolution x-ray absorption spectra of lanthanide (Ln) and heavy transition metal complexes that display prominent narrow absorption peaks near the L2 and L3 absorption edges. The anomalous scattering factors (f' and f"), which are mathematically related to the absorption cross section, have corr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.77.10.5884

    authors: Lye RC,Phillips JC,Kaplan D,Doniach S,Hodgson KO

    更新日期:1980-10-01 00:00:00

  • beta-dystrobrevin, a member of the dystrophin-related protein family.

    abstract::The importance of dystrophin and its associated proteins in normal muscle function is now well established. Many of these proteins are expressed in nonmuscle tissues, particularly the brain. Here we describe the characterization of beta-dystrobrevin, a dystrophin-related protein that is abundantly expressed in brain a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.1.241

    authors: Blake DJ,Nawrotzki R,Loh NY,Górecki DC,Davies KE

    更新日期:1998-01-06 00:00:00