Adaptation of the Romanomermis culicivorax CCA-Adding Enzyme to Miniaturized Armless tRNA Substrates.

Abstract:

:The mitochondrial genome of the nematode Romanomermis culicivorax encodes for miniaturized hairpin-like tRNA molecules that lack D- as well as T-arms, strongly deviating from the consensus cloverleaf. The single tRNA nucleotidyltransferase of this organism is fully active on armless tRNAs, while the human counterpart is not able to add a complete CCA-end. Transplanting single regions of the Romanomermis enzyme into the human counterpart, we identified a beta-turn element of the catalytic core that-when inserted into the human enzyme-confers full CCA-adding activity on armless tRNAs. This region, originally identified to position the 3'-end of the tRNA primer in the catalytic core, dramatically increases the enzyme's substrate affinity. While conventional tRNA substrates bind to the enzyme by interactions with the T-arm, this is not possible in the case of armless tRNAs, and the strong contribution of the beta-turn compensates for an otherwise too weak interaction required for the addition of a complete CCA-terminus. This compensation demonstrates the remarkable evolutionary plasticity of the catalytic core elements of this enzyme to adapt to unconventional tRNA substrates.

journal_name

Int J Mol Sci

authors

Hennig O,Philipp S,Bonin S,Rollet K,Kolberg T,Jühling T,Betat H,Sauter C,Mörl M

doi

10.3390/ijms21239047

subject

Has Abstract

pub_date

2020-11-28 00:00:00

issue

23

issn

1422-0067

pii

ijms21239047

journal_volume

21

pub_type

杂志文章
  • Fractionation of whey protein isolate with supercritical carbon dioxide-process modeling and cost estimation.

    abstract::An economical and environmentally friendly whey protein fractionation process was developed using supercritical carbon dioxide (sCO(2)) as an acid to produce enriched fractions of α-lactalbumin (α-LA) and β-lactoglobulin (β-LG) from a commercial whey protein isolate (WPI) containing 20% α-LA and 55% β-LG, through sele...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms13010240

    authors: Yver AL,Bonnaillie LM,Yee W,McAloon A,Tomasula PM

    更新日期:2012-01-01 00:00:00

  • Insights into the Impact of Linker Flexibility and Fragment Ionization on the Design of CK2 Allosteric Inhibitors: Comparative Molecular Dynamics Simulation Studies.

    abstract::Protein kinase is a novel therapeutic target for human diseases. The off-target and side effects of ATP-competitive inhibitors preclude them from the clinically relevant drugs. The compounds targeting the druggable allosteric sites outside the highly conversed ATP binding pocket have been identified as promising alter...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19010111

    authors: Zhou Y,Zhang N,Qi X,Tang S,Sun G,Zhao L,Zhong R,Peng Y

    更新日期:2018-01-01 00:00:00

  • p38 MAPK in Glucose Metabolism of Skeletal Muscle: Beneficial or Harmful?

    abstract::Skeletal muscles respond to environmental and physiological changes by varying their size, fiber type, and metabolic properties. P38 mitogen-activated protein kinase (MAPK) is one of several signaling pathways that drive the metabolic adaptation of skeletal muscle to exercise. p38 MAPK also participates in the develop...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21186480

    authors: Bengal E,Aviram S,Hayek T

    更新日期:2020-09-04 00:00:00

  • Problems Associated with Deprescribing of Proton Pump Inhibitors.

    abstract::Proton pump inhibitors (PPIs) are recommended as a first-line treatment for gastroesophageal reflux disease (GERD) and other acid related disorders. In recent years, concerns have been raised about the increasing prevalence of patients on long-term PPI therapy and inappropriate PPI use. It is well known that short-ter...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20215469

    authors: Helgadottir H,Bjornsson ES

    更新日期:2019-11-02 00:00:00

  • The Roles of Sodium-Independent Inorganic Phosphate Transporters in Inorganic Phosphate Homeostasis and in Cancer and Other Diseases.

    abstract::Inorganic phosphate (Pi) is an essential nutrient for the maintenance of cells. In healthy mammals, extracellular Pi is maintained within a narrow concentration range of 0.70 to 1.55 mM. Mammalian cells depend on Na+/Pi cotransporters for Pi absorption, which have been well studied. However, a new type of sodium-indep...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21239298

    authors: Lacerda-Abreu MA,Russo-Abrahão T,Meyer-Fernandes JR

    更新日期:2020-12-06 00:00:00

  • Evaluation of the antiradical properties of phenolic acids.

    abstract::Antioxidant capacity (AOC) against peroxyl radical and 2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulphonic acid) diammonium salt (ABTS) radical cation was measured for a series of p-hydroxybenzoic (HB) and p-hydroxycinnamic (HC) acids at different pH. Quantum-chemical computation was performed using Gaussian 3.0 softwa...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms150916351

    authors: Koroleva O,Torkova A,Nikolaev I,Khrameeva E,Fedorova T,Tsentalovich M,Amarowicz R

    更新日期:2014-09-16 00:00:00

  • Exosomal Expression of CXCR4 Targets Cardioprotective Vesicles to Myocardial Infarction and Improves Outcome after Systemic Administration.

    abstract::Cell therapy has been evaluated to enhance heart function after injury. Delivered cells mostly act via paracrine mechanisms, including secreted growth factors, cytokines, and vesicles, such as exosomes (Exo). Intramyocardial injection of cardiac-resident progenitor cells (CPC)-derived Exo reduced scarring and improved...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20030468

    authors: Ciullo A,Biemmi V,Milano G,Bolis S,Cervio E,Fertig ET,Gherghiceanu M,Moccetti T,Camici GG,Vassalli G,Barile L

    更新日期:2019-01-22 00:00:00

  • Inhibition of HDAC Enzymes Contributes to Differential Expression of Pro-Inflammatory Proteins in the TLR-4 Signaling Cascade.

    abstract::Class I and II histone deacetylases (HDAC) are considered important regulators of immunity and inflammation. Modulation of HDAC expression and activity is associated with altered inflammatory responses but reports are controversial and the specific impact of single HDACs is not clear. We examined class I and II HDACs ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21238943

    authors: Weiss U,Möller M,Husseini SA,Manderscheid C,Häusler J,Geisslinger G,Niederberger E

    更新日期:2020-11-25 00:00:00

  • What do effective treatments for multiple sclerosis tell us about the molecular mechanisms involved in pathogenesis?

    abstract::Multiple sclerosis is a potentially debilitating disease of the central nervous system. A concerted program of research by many centers around the world has consistently demonstrated the importance of the immune system in its pathogenesis. This knowledge has led to the formal testing of a number of therapeutic agents ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms131012665

    authors: Buzzard KA,Broadley SA,Butzkueven H

    更新日期:2012-10-04 00:00:00

  • Interleukin-10 Protection against Lipopolysaccharide-Induced Neuro-Inflammation and Neurotoxicity in Ventral Mesencephalic Cultures.

    abstract::Interleukin (IL)-10, an anti-inflammatory cytokine, is expressed in the brain and can inhibit microglial activation. Herein, we utilized lipopolysaccharide (LPS)-induced inflammatory Parkinson's disease (PD) cell model to determine whether microglia and astrocytes are necessary targets for IL-10 neuroprotection. Prima...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17010025

    authors: Zhu Y,Chen X,Liu Z,Peng YP,Qiu YH

    更新日期:2015-12-28 00:00:00

  • Nuclear Phosphoinositides: Their Regulation and Roles in Nuclear Functions.

    abstract::Polyphosphoinositides (PPIns) are a family of seven lipid messengers that regulate a vast array of signalling pathways to control cell proliferation, migration, survival and differentiation. PPIns are differentially present in various sub-cellular compartments and, through the recruitment and regulation of specific pr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20122991

    authors: Fiume R,Faenza I,Sheth B,Poli A,Vidalle MC,Mazzetti C,Abdul SH,Campagnoli F,Fabbrini M,Kimber ST,Mariani GA,Xian J,Marvi MV,Mongiorgi S,Shah Z,Divecha N

    更新日期:2019-06-19 00:00:00

  • Effects of intramolecular distance between amyloidogenic domains on amyloid aggregation.

    abstract::Peptide/protein aggregation is implicated in many amyloid diseases. Some amyloidogenic peptides/proteins, such as those implicated in Alzheimer's and Parkinson's diseases, contain multiple amyloidogenic domains connected by "linker" sequences displaying high propensities to form turn structures. Recent studies have de...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms131012169

    authors: Ko A,Kim JR

    更新日期:2012-09-25 00:00:00

  • Actin and Actin-Associated Proteins in Extracellular Vesicles Shed by Osteoclasts.

    abstract::Extracellular vesicles (EVs) are shed by all eukaryotic cells and have emerged as important intercellular regulators. EVs released by osteoclasts were recently identified as important coupling factors in bone remodeling. They are shed as osteoclasts resorb bone and stimulate osteoblasts to form bone to replace the bon...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21010158

    authors: Holliday LS,Faria LP,Rody WJ Jr

    更新日期:2019-12-25 00:00:00

  • Verification of the Saccharina japonica Translocon Tic20 and its Localization in the Chloroplast Membrane in Diatoms.

    abstract::Tic20 is an important translocon protein that plays a role in protein transport in the chloroplast. The sequence of Tic20 was determined in the lower brown alga Saccharina japonica. Structural analysis of SjTic20 revealed a noncanonical structure consisting of an N-terminal non-cyanobacterium-originated EF-hand domain...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20164000

    authors: Chen Z,Wang X,Li S,Yao J,Shao Z,Duan D

    更新日期:2019-08-16 00:00:00

  • Overview of the Microenvironment of Vasculature in Vascular Tone Regulation.

    abstract::Hypertension is asymptomatic and a well-known "silent killer", which can cause various concomitant diseases in human population after years of adherence. Although there are varieties of synthetic antihypertensive drugs available in current market, their relatively low efficacies and major application in only single dr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19010120

    authors: Loh YC,Tan CS,Ch'ng YS,Yeap ZQ,Ng CH,Yam MF

    更新日期:2018-01-02 00:00:00

  • Mitochondrial AOX Supports Redox Balance of Photosynthetic Electron Transport, Primary Metabolite Balance, and Growth in Arabidopsis thaliana under High Light.

    abstract::When leaves receive excess light energy, excess reductants accumulate in chloroplasts. It is suggested that some of the reductants are oxidized by the mitochondrial respiratory chain. Alternative oxidase (AOX), a non-energy conserving terminal oxidase, was upregulated in the photosynthetic mutant of Arabidopsis thalia...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20123067

    authors: Jiang Z,Watanabe CKA,Miyagi A,Kawai-Yamada M,Terashima I,Noguchi K

    更新日期:2019-06-23 00:00:00

  • Acid-denatured Green Fluorescent Protein (GFP) as model substrate to study the chaperone activity of protein disulfide isomerase.

    abstract::Green fluorescent protein (GFP) has been widely used in several molecular and cellular biology applications, since it is remarkably stable in vitro and in vivo. Interestingly, native GFP is resistant to the most common chemical denaturants; however, a low fluorescence signal has been observed after acid-induced denatu...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms12074625

    authors: Mares RE,Meléndez-López SG,Ramos MA

    更新日期:2011-01-01 00:00:00

  • Stimuli-Responsive Materials for Tissue Engineering and Drug Delivery.

    abstract::Smart or stimuli-responsive materials are an emerging class of materials used for tissue engineering and drug delivery. A variety of stimuli (including temperature, pH, redox-state, light, and magnet fields) are being investigated for their potential to change a material's properties, interactions, structure, and/or d...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21134724

    authors: Municoy S,Álvarez Echazú MI,Antezana PE,Galdopórpora JM,Olivetti C,Mebert AM,Foglia ML,Tuttolomondo MV,Alvarez GS,Hardy JG,Desimone MF

    更新日期:2020-07-02 00:00:00

  • Investigation of Bone Growth in Additive-Manufactured Pedicle Screw Implant by Using Ti-6Al-4V and Bioactive Glass Powder Composite.

    abstract::In this study, we optimized the geometry and composition of additive-manufactured pedicle screws. Metal powders of titanium-aluminum-vanadium (Ti-6Al-4V) were mixed with reactive glass-ceramic biomaterials of bioactive glass (BG) powders. To optimize the geometry of pedicle screws, we applied a novel numerical approac...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21207438

    authors: Lam TN,Trinh MG,Huang CC,Kung PC,Huang WC,Chang W,Amalia L,Chin HH,Tsou NT,Shih SJ,Chen SY,Wang CC,Tsai PI,Wu MH,Huang EW

    更新日期:2020-10-09 00:00:00

  • Vascular Cognitive Impairment: Information from Animal Models on the Pathogenic Mechanisms of Cognitive Deficits.

    abstract::Vascular cognitive impairment (VCI) is the second most common cause of cognitive deficit after Alzheimer's disease. Since VCI patients represent an important target population for prevention, an ongoing effort has been made to elucidate the pathogenesis of this disorder. In this review, we summarize the information fr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20102405

    authors: Hort J,Vališ M,Kuča K,Angelucci F

    更新日期:2019-05-15 00:00:00

  • Neurological and Epigenetic Implications of Nutritional Deficiencies on Psychopathology: Conceptualization and Review of Evidence.

    abstract::In recent years, a role for epigenetic modifications in the pathophysiology of disease has received significant attention. Many studies are now beginning to explore the gene-environment interactions, which may mediate early-life exposure to risk factors, such as nutritional deficiencies and later development of behavi...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms160818129

    authors: Liu J,Zhao SR,Reyes T

    更新日期:2015-08-05 00:00:00

  • Molecular cloning and expression analysis of P-selectin from Zebrafish (Danio rerio).

    abstract::The glycoprotein P-selectin belongs to the selectin family of cell adhesion molecules. In this study, we cloned the full-length cDNA of P-selectin from zebrafish (Danio rerio) by the method of rapid amplification of cDNA ends polymerase chain reaction (RACE-PCR). Zebrafish P-selectin cDNA is 2,800 bp and encodes a put...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms11114618

    authors: Sun G,Pan J,Liu K,Wang X,Wang S

    更新日期:2010-11-17 00:00:00

  • Distant Metastasis in Colorectal Cancer Patients-Do We Have New Predicting Clinicopathological and Molecular Biomarkers? A Comprehensive Review.

    abstract::Colorectal cancer (CRC) remains a serious health problem worldwide. Approximately half of patients will develop distant metastasis after CRC resection, usually with very poor prognosis afterwards. Because patient performance after distant metastasis surgery remains very heterogeneous, ranging from death within 2 years...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21155255

    authors: Filip S,Vymetalkova V,Petera J,Vodickova L,Kubecek O,John S,Cecka F,Krupova M,Manethova M,Cervena K,Vodicka P

    更新日期:2020-07-24 00:00:00

  • Gold Nanoparticles in Diagnostics and Therapeutics for Human Cancer.

    abstract::The application of nanotechnology for the treatment of cancer is mostly based on early tumor detection and diagnosis by nanodevices capable of selective targeting and delivery of chemotherapeutic drugs to the specific tumor site. Due to the remarkable properties of gold nanoparticles, they have long been considered as...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19071979

    authors: Singh P,Pandit S,Mokkapati VRSS,Garg A,Ravikumar V,Mijakovic I

    更新日期:2018-07-06 00:00:00

  • Antibacterial activity of the alkaloid-enriched extract from Prosopis juliflora pods and its influence on in vitro ruminal digestion.

    abstract::The purpose of this study was to assess the in vitro antimicrobial activity of alkaloid-enriched extracts from Prosopis juliflora (Fabaceae) pods in order to evaluate them as feed additives for ruminants. As only the basic chloroformic extract (BCE), whose main constituents were juliprosopine (juliflorine), prosoflori...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms14048496

    authors: Dos Santos ET,Pereira ML,da Silva CF,Souza-Neta LC,Geris R,Martins D,Santana AE,Barbosa LC,Silva HG,Freitas GC,Figueiredo MP,de Oliveira FF,Batista R

    更新日期:2013-04-17 00:00:00

  • Changes in the Soil Microbiome in Eggplant Monoculture Revealed by High-Throughput Illumina MiSeq Sequencing as Influenced by Raw Garlic Stalk Amendment.

    abstract::The incorporation of plant residues into soil can be considered a keystone sustainability factor in improving soil structure function. However, the effects of plant residue addition on the soil microbial communities involved in biochemical cycles and abiotic stress phenomena are poorly understood. In this study, exper...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20092125

    authors: Ghani MI,Ali A,Atif MJ,Ali M,Amin B,Anees M,Khurshid H,Cheng Z

    更新日期:2019-04-29 00:00:00

  • Lipid Composition Affects the Efficiency in the Functional Reconstitution of the Cytochrome c Oxidase.

    abstract::The transmembrane protein cytochrome c oxidase (CcO) is the terminal oxidase in the respiratory chain of many aerobic organisms and catalyzes the reduction of dioxygen to water. This process maintains an electrochemical proton gradient across the membrane hosting the oxidase. CcO is a well-established model enzyme in ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21196981

    authors: Hugentobler KG,Heinrich D,Berg J,Heberle J,Brzezinski P,Schlesinger R,Block S

    更新日期:2020-09-23 00:00:00

  • Epigenetic Suppression of the T-box Subfamily 2 (TBX2) in Human Non-Small Cell Lung Cancer.

    abstract::(1) The TBX2 subfamily of transcription factors (TBXs 2, 3, 4 and 5) are markedly down-regulated in human non-small cell lung cancer (NSCLC) and exert tumor suppressor effects in lung malignancy. Yet, mechanisms underlying suppressed expression of the TBX2 subfamily in NSCLC are elusive. Here, we interrogated probable...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20051159

    authors: Nehme E,Rahal Z,Sinjab A,Khalil A,Chami H,Nemer G,Kadara H

    更新日期:2019-03-07 00:00:00

  • Alpha-B-Crystallin Effect on Mature Amyloid Fibrils: Different Degradation Mechanisms and Changes in Cytotoxicity.

    abstract::Given the ability of molecular chaperones and chaperone-like proteins to inhibit the formation of pathological amyloid fibrils, the chaperone-based therapy of amyloidosis has recently been proposed. However, since these diseases are often diagnosed at the stages when a large amount of amyloids is already accumulated i...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21207659

    authors: Stepanenko OV,Sulatsky MI,Mikhailova EV,Stepanenko OV,Povarova OI,Kuznetsova IM,Turoverov KK,Sulatskaya AI

    更新日期:2020-10-16 00:00:00

  • Estrogen Induces Selective Transcription of Caveolin1 Variants in Human Breast Cancer through Estrogen Responsive Element-Dependent Mechanisms.

    abstract::The estrogen receptor (ER) signaling regulates numerous physiological processes mainly through activation of gene transcription (genomic pathways). Caveolin1 (CAV1) is a membrane-resident protein that behaves as platform to enable different signaling molecules and receptors for membrane-initiated pathways. CAV1 direct...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21175989

    authors: Romano A,Feola A,Porcellini A,Gigantino V,Di Bonito M,Di Mauro A,Caggiano R,Faraonio R,Zuchegna C

    更新日期:2020-08-20 00:00:00