Enhanced and unified anatomical labeling for a common mouse brain atlas.

Abstract:

:Anatomical atlases in standard coordinates are necessary for the interpretation and integration of research findings in a common spatial context. However, the two most-used mouse brain atlases, the Franklin-Paxinos (FP) and the common coordinate framework (CCF) from the Allen Institute for Brain Science, have accumulated inconsistencies in anatomical delineations and nomenclature, creating confusion among neuroscientists. To overcome these issues, we adopt here the FP labels into the CCF to merge the labels in the single atlas framework. We use cell type-specific transgenic mice and an MRI atlas to adjust and further segment our labels. Moreover, detailed segmentations are added to the dorsal striatum using cortico-striatal connectivity data. Lastly, we digitize our anatomical labels based on the Allen ontology, create a web-interface for visualization, and provide tools for comprehensive comparisons between the CCF and FP labels. Our open-source labels signify a key step towards a unified mouse brain atlas.

journal_name

Nat Commun

journal_title

Nature communications

authors

Chon U,Vanselow DJ,Cheng KC,Kim Y

doi

10.1038/s41467-019-13057-w

subject

Has Abstract

pub_date

2019-11-07 00:00:00

pages

5067

issue

1

issn

2041-1723

pii

10.1038/s41467-019-13057-w

journal_volume

10

pub_type

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