Geometric principles of second messenger dynamics in dendritic spines.

Abstract:

:Dendritic spines are small, bulbous protrusions along dendrites in neurons and play a critical role in synaptic transmission. Dendritic spines come in a variety of shapes that depend on their developmental state. Additionally, roughly 14-19% of mature spines have a specialized endoplasmic reticulum called the spine apparatus. How does the shape of a postsynaptic spine and its internal organization affect the spatio-temporal dynamics of short timescale signaling? Answers to this question are central to our understanding the initiation of synaptic transmission, learning, and memory formation. In this work, we investigated the effect of spine and spine apparatus size and shape on the spatio-temporal dynamics of second messengers using mathematical modeling using reaction-diffusion equations in idealized geometries (ellipsoids, spheres, and mushroom-shaped). Our analyses and simulations showed that in the short timescale, spine size and shape coupled with the spine apparatus geometries govern the spatiotemporal dynamics of second messengers. We show that the curvature of the geometries gives rise to pseudo-harmonic functions, which predict the locations of maximum and minimum concentrations along the spine head. Furthermore, we showed that the lifetime of the concentration gradient can be fine-tuned by localization of fluxes on the spine head and varying the relative curvatures and distances between the spine apparatus and the spine head. Thus, we have identified several key geometric determinants of how the spine head and spine apparatus may regulate the short timescale chemical dynamics of small molecules that control synaptic plasticity.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Cugno A,Bartol TM,Sejnowski TJ,Iyengar R,Rangamani P

doi

10.1038/s41598-019-48028-0

subject

Has Abstract

pub_date

2019-08-12 00:00:00

pages

11676

issue

1

issn

2045-2322

pii

10.1038/s41598-019-48028-0

journal_volume

9

pub_type

杂志文章
  • Designing a new cropping system for high productivity and sustainable water usage under climate change.

    abstract::The food supply is being increasingly challenged by climate change and water scarcity. However, incremental changes in traditional cropping systems have achieved only limited success in meeting these multiple challenges. In this study, we applied a systematic approach, using model simulation and data from two groups o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41587

    authors: Meng Q,Wang H,Yan P,Pan J,Lu D,Cui Z,Zhang F,Chen X

    更新日期:2017-02-03 00:00:00

  • Transfer and Integration of Breast Milk Stem Cells to the Brain of Suckling Pups.

    abstract::Beside its unique nutritional content breast milk also contains live cells from the mother. Fate of these cells in the offspring has not been adequately described. In this study, we aimed to detect and identify maternal cells in the suckling's blood and the brain. Green fluorescent protein expressing transgenic female...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32715-5

    authors: Aydın MŞ,Yiğit EN,Vatandaşlar E,Erdoğan E,Öztürk G

    更新日期:2018-09-24 00:00:00

  • Transcriptome Analysis in Spleen Reveals Differential Regulation of Response to Newcastle Disease Virus in Two Chicken Lines.

    abstract::Enhancing genetic resistance of chickens to Newcastle Disease Virus (NDV) provides a promising way to improve poultry health, and to alleviate poverty and food insecurity in developing countries. In this study, two inbred chicken lines with different responses to NDV, Fayoumi and Leghorn, were challenged with LaSota N...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-19754-8

    authors: Zhang J,Kaiser MG,Deist MS,Gallardo RA,Bunn DA,Kelly TR,Dekkers JCM,Zhou H,Lamont SJ

    更新日期:2018-01-19 00:00:00

  • The temporary and accumulated effects of transcranial direct current stimulation for the treatment of advanced Parkinson's disease monkeys.

    abstract::Transcranial direct current stimulation (tDCS) is a useful noninvasive technique of cortical brain stimulation for the treatment of neurological disorders. Clinical research has demonstrated tDCS with anodal stimulation of primary motor cortex (M1) in Parkinson's disease (PD) patients significantly improved their moto...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12178

    authors: Li H,Lei X,Yan T,Li H,Huang B,Li L,Xu L,Liu L,Chen N,Lü L,Ma Y,Xu L,Li J,Wang Z,Zhang B,Hu X

    更新日期:2015-07-29 00:00:00

  • In vitro biological screening of a critically endangered medicinal plant, Atropa acuminata Royle Ex Lindl of north western Himalaya.

    abstract::Atropa acuminata Royle Ex Lindl (Atropa acuminata) under tremendous threat of extinction in its natural habitat. However, the antimicrobial, antileishmanial and anticancer effects of the plant's extracts have not been reported yet. In the current study, an attempt has been made to evaluate the pharmacological potentia...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29231-x

    authors: Rahman K,Khan SU,Fahad S,Shinwari ZK,Khan D,Kamal S,Ullah I,Anjum SI,Man S,Khan AJ,Khan WU,Khan MHU,Jan M,Adnan M,Noor M

    更新日期:2018-07-23 00:00:00

  • Growth hormone-mediated reprogramming of macrophage transcriptome and effector functions.

    abstract::Macrophages are an important component of the innate immune response. Priming and activation of macrophages is stimulated by cytokines (i.e IFNγ). However, growth hormone (GH) can also stimulate macrophage activation. Based on these observations, the goal of this work was to 1) to compare the transcriptome profile of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56017-6

    authors: Schneider A,Wood HN,Geden S,Greene CJ,Yates RM,Masternak MM,Rohde KH

    更新日期:2019-12-18 00:00:00

  • Assessment of pharmacokinetic compatibility of short acting CDRI candidate trioxane derivative, 99-411, with long acting prescription antimalarials, lumefantrine and piperaquine.

    abstract::The pharmacokinetic compatibility of short-acting CDRI candidate antimalarial trioxane derivative, 99-411, was tested with long-acting prescription antimalarials, lumefantrine and piperaquine. LC-ESI-MS/MS methods were validated for simultaneous bioanalysis of lumefantrine and 99-411 and of piperaquine and 99-411 comb...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17264

    authors: Taneja I,Raju KS,Singh SP,Wahajuddin M

    更新日期:2015-11-25 00:00:00

  • Investigation of Inhibition Mechanism of Chemokine Receptor CCR5 by Micro-second Molecular Dynamics Simulations.

    abstract::Chemokine receptor 5 (CCR5) belongs to G protein coupled receptors (GPCRs) and plays an important role in treatment of human immunodeficiency virus (HIV) infection since HIV uses CCR5 protein as a co-receptor. Recently, the crystal structure of CCR5-bound complex with an approved anti-retroviral drug (maroviroc) was r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13180

    authors: Salmas RE,Yurtsever M,Durdagi S

    更新日期:2015-08-24 00:00:00

  • Oxidative Stress is a Convincing Contributor to Idiopathic Chronic Fatigue.

    abstract::The linkage between oxidative stress and idiopathic chronic fatigue (ICF) has not been explored in detail. This study thoroughly compared the serum levels of biomarkers for oxidative stress and antioxidants from 103 subjects with ICF (20 men and 83 women) to those of 82 healthy volunteers (27 men and 55 women). Oxidat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31270-3

    authors: Lee JS,Kim HG,Lee DS,Son CG

    更新日期:2018-08-27 00:00:00

  • Fabricating of high-performance functional graphene fibers for micro-capacitive energy storage.

    abstract::Although graphene is a typical two dimensional materials, it has converted to multi-dimensional materials with many unique properties. As an example, the one dimensional graphene fiber is fabricated by utilizing ionic liquid as coagulation and functional diamines as cross-linkers to connect graphene oxide layers. The ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29534

    authors: Fan T,Zhao C,Xiao Z,Guo F,Cai K,Lin H,Liu Y,Meng H,Min Y,Epstein AJ

    更新日期:2016-07-08 00:00:00

  • Human neural stem cell-induced endothelial morphogenesis requires autocrine/paracrine and juxtacrine signaling.

    abstract::Transplanted neural stem cells (NSC) interact with the host brain microenvironment. A neovascularization is commonly observed in the vicinity of the cell deposit, which is correlated with behavioral improvements. To elucidate the signaling mechanisms between human NSCs and endothelial cells (ECs), these were coculture...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29029

    authors: Chou CH,Modo M

    更新日期:2016-07-04 00:00:00

  • An effect of molecular motion on carrier formation in a poly(3-hexylthiophene) film.

    abstract::Free carriers, polarons (P), in conjugated polymers play a key role in the performance of optoelectronic devices. Here, we present solid evidence that P can be predominantly generated from polaron pairs (PP) in a poly(3-hexylthiophene) (P3HT) film under zero electric field. P formation from PP strongly depends on temp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08436

    authors: Ogata Y,Kawaguchi D,Tanaka K

    更新日期:2015-02-13 00:00:00

  • A random Q-switched fiber laser.

    abstract::Extensive studies have been performed on random lasers in which multiple-scattering feedback is used to generate coherent emission. Q-switching and mode-locking are well-known routes for achieving high peak power output in conventional lasers. However, in random lasers, the ubiquitous random cavities that are formed b...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09338

    authors: Tang Y,Xu J

    更新日期:2015-03-23 00:00:00

  • Lifespan Gyrification Trajectories of Human Brain in Healthy Individuals and Patients with Major Psychiatric Disorders.

    abstract::Cortical gyrification of the brain represents the folding characteristic of the cerebral cortex. How the brain cortical gyrification changes from childhood to old age in healthy human subjects is still unclear. Additionally, studies have shown regional gyrification alterations in patients with major psychiatric disord...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00582-1

    authors: Cao B,Mwangi B,Passos IC,Wu MJ,Keser Z,Zunta-Soares GB,Xu D,Hasan KM,Soares JC

    更新日期:2017-03-30 00:00:00

  • Silver Nanowires Modified with PEDOT: PSS and Graphene for Organic Light-Emitting Diodes Anode.

    abstract::Silver nanowires (AgNWs) networks are promising candidates for the replacement of indium tin oxide (ITO). However, the surface roughness of the AgNWs network is still too high for its application in optoelectronic devices. In this work, we have reduced the surface roughness of the AgNWs networks to 6.4 nm, compared to...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45392

    authors: Xu Y,Wei X,Wang C,Cao J,Chen Y,Ma Z,You Y,Wan J,Fang X,Chen X

    更新日期:2017-03-28 00:00:00

  • MnGa-based fully perpendicular magnetic tunnel junctions with ultrathin Co2MnSi interlayers.

    abstract::Because tetragonal structured MnGa alloy has intrinsic (not interface induced) giant perpendicular magnetic anisotropy (PMA), ultra-low damping constant and high spin polarization, it is predicted to be a kind of suitable magnetic electrode candidate in the perpendicular magnetic tunnel junction (p-MTJ) for high densi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43064

    authors: Mao S,Lu J,Zhao X,Wang X,Wei D,Liu J,Xia J,Zhao J

    更新日期:2017-02-24 00:00:00

  • Platform- and label-free detection of lead ions in environmental and laboratory samples using G-quadraplex probes by circular dichroism spectroscopy.

    abstract::Guanine-rich quadruplex (G-QD) are formed by conversion of nucleotides with specific sequences by stabilization of positively charged K+ or Na+. These G-QD structures differentially absorb two-directional (right- and left-handed) circularly polarized light, which can discriminate the parallel or anti-parallel structur...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77449-5

    authors: Kim R,Youn YS,Kang M,Kim E

    更新日期:2020-11-24 00:00:00

  • New breast cancer prognostic factors identified by computer-aided image analysis of HE stained histopathology images.

    abstract::Computer-aided image analysis (CAI) can help objectively quantify morphologic features of hematoxylin-eosin (HE) histopathology images and provide potentially useful prognostic information on breast cancer. We performed a CAI workflow on 1,150 HE images from 230 patients with invasive ductal carcinoma (IDC) of the bre...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10690

    authors: Chen JM,Qu AP,Wang LW,Yuan JP,Yang F,Xiang QM,Maskey N,Yang GF,Liu J,Li Y

    更新日期:2015-05-29 00:00:00

  • Development of Alendronate-conjugated Poly (lactic-co-glycolic acid)-Dextran Nanoparticles for Active Targeting of Cisplatin in Osteosarcoma.

    abstract::In this study, we developed a novel poly (lactic-co-glycolic acid)-dextran (PLD)-based nanodelivery system to enhance the anticancer potential of cisplatin (CDDP) in osteosarcoma cells. A nanosized CDDP-loaded PLGA-DX nanoparticle (PLD/CDDP) controlled the release rate of CDDP up to 48 h. In vitro cytotoxicity assay s...

    journal_title:Scientific reports

    pub_type: 杂志文章,收录出版

    doi:10.1038/srep17387

    authors: Liu P,Sun L,Zhou DS,Zhang P,Wang YH,Li D,Li QH,Feng RJ

    更新日期:2015-12-01 00:00:00

  • Gabapentin-induced drug-seeking-like behavior: a potential role for the dopaminergic system.

    abstract::Drugs of abuse represent a growing public health crisis. Accumulating evidence indicates that gabapentin (GBP), a prescription drug, is prone to misuse, abuse, withdrawal, and dependence. Commonly, drugs of abuse modulate the dopaminergic system to induce addiction. In this study, we used the conditioned place prefere...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67318-6

    authors: Althobaiti YS,Alghorabi A,Alshehri FS,Baothman B,Almalki AH,Alsaab HO,Alsanie W,Gaber A,Almalki H,Alghamdi AS,Basfer A,Althobaiti S,Hardy AMG,Shah ZA

    更新日期:2020-06-26 00:00:00

  • Cylindrical Fused Silica Resonators Driven by PZT Thin Film Electrodes with Q Factor Achieving 2.89 Million after Coating.

    abstract::Cylindrical shell fused silica resonators coated with 8 axisymmetric Pb(Zr0.53Ti0.47)O3 (PZT) thin film electrodes (thickness ~2 μm) were reported. The resonators were firstly designed and fabricated, then annealed and processed by chemical etching to increase mechanical quality factor (Q factor) of resonators, which ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45180-5

    authors: Luo Y,Qu T,Cui Y,Pan Y,Yu M,Luo H,Jia Y,Tan Z,Liu J,Zhang B

    更新日期:2019-07-01 00:00:00

  • Optimization of the energy for Breast monochromatic absorption X-ray Computed Tomography.

    abstract::The limits of mammography have led to an increasing interest on possible alternatives such as the breast Computed Tomography (bCT). The common goal of all X-ray imaging techniques is to achieve the optimal contrast resolution, measured through the Contrast to Noise Ratio (CNR), while minimizing the radiological risks,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49351-2

    authors: Delogu P,Di Trapani V,Brombal L,Mettivier G,Taibi A,Oliva P

    更新日期:2019-09-11 00:00:00

  • Publisher Correction: RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-64447-w

    authors: Colak D,Al-Harazi O,Mustafa OM,Meng F,Assiri AM,Dhar DK,Broering DC

    更新日期:2020-05-05 00:00:00

  • ZeBRα a universal, multi-fragment DNA-assembly-system with minimal hands-on time requirement.

    abstract::The recently evolved field of synthetic biology has revolutionized the way we think of biology as an "engineerable" discipline. The newly sprouted branch is constantly in need of simple, cost-effective and automatable DNA-assembly methods. We have developed a reliable DNA-assembly system, ZeBRα (Zero-Background Redα),...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-39768-0

    authors: Richter D,Bayer K,Toesko T,Schuster S

    更新日期:2019-02-27 00:00:00

  • A miR-199a/miR-214 self-regulatory network via PSMD10, TP53 and DNMT1 in testicular germ cell tumor.

    abstract::It was previously demonstrated that microRNA-199a (miR-199a) was down-regulated in testicular germ cell tumor (TGCT) partially caused by hypermethylation of its promoter. miR-199a is encoded by two loci in the human genome, miR-199a-1 on chromosome (Chr) 19 and miR-199a-2 on Chr 1. Both loci encode the same miR-199a. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06413

    authors: Chen BF,Suen YK,Gu S,Li L,Chan WY

    更新日期:2014-09-18 00:00:00

  • A Low Permeability Microfluidic Blood-Brain Barrier Platform with Direct Contact between Perfusable Vascular Network and Astrocytes.

    abstract::A novel three dimensional blood brain barrier (BBB) platform was developed by independently supplying different types of media to separate cell types within a single device. One channel (vascular channel, VC) is connected to the inner lumen of the vascular network while the other supplies media to the neural cells (ne...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07416-0

    authors: Bang S,Lee SR,Ko J,Son K,Tahk D,Ahn J,Im C,Jeon NL

    更新日期:2017-08-14 00:00:00

  • Work stress, anthropometry, lung function, blood pressure, and blood-based biomarkers: a cross-sectional study of 43,593 French men and women.

    abstract::Work stress is a risk factor for cardio-metabolic diseases, but few large-scale studies have examined the clinical profile of individuals with work stress. To address this limitation, we conducted a cross-sectional study including 43,593 working adults from a French population-based sample aged 18-72 years (the CONSTA...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07508-x

    authors: Magnusson Hanson LL,Westerlund H,Goldberg M,Zins M,Vahtera J,Hulvej Rod N,Stenholm S,Steptoe A,Kivimäki M

    更新日期:2017-08-24 00:00:00

  • Effects of a High-Intensity Exercise Program on Weight Regain and Cardio-metabolic Profile after 3 Years of Bariatric Surgery: A Randomized Trial.

    abstract::Weight regain is one of the most common problems in the long-term after bariatric surgery. It is unknown if high-intensity exercise programs applied in late phases of post-surgical follow-up could counteract this trend. After a 3-year follow-up, 21 patients underwent sleeve gastrectomy were randomized into an exercise...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-020-60044-z

    authors: Marc-Hernández A,Ruiz-Tovar J,Aracil A,Guillén S,Moya-Ramón M

    更新日期:2020-02-20 00:00:00

  • C10orf99 contributes to the development of psoriasis by promoting the proliferation of keratinocytes.

    abstract::Psoriasis is a chronic, relapsing inflammatory skin disease. The pathogenesis of psoriasis is complex and has not been fully understood. C10orf99 was a recently identified human antimicrobial peptide whose mRNA expression is elevated in psoriatic human skin samples. In this study, we investigated the functional roles ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26996-z

    authors: Chen C,Wu N,Duan Q,Yang H,Wang X,Yang P,Zhang M,Liu J,Liu Z,Shao Y,Zheng Y

    更新日期:2018-06-05 00:00:00

  • N-acetylaspartate reduction in the medial prefrontal cortex following 8 weeks of risperidone treatment in first-episode drug-naïve schizophrenia patients.

    abstract::It is unclear whether N-acetylaspartate (NAA) depletions documented in schizophrenia patients might be due to the disease progression or medications. Here we investigated longitudinal NAA changes in drug-naïve first-episode patients (FEP) who are relatively free from chronicity. Forty-two drug-naïve FEP and 38 control...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09109

    authors: Zong X,Hu M,Li Z,Cao H,He Y,Liao Y,Zhou J,Sang D,Zhao H,Tang J,Lv L,Chen X

    更新日期:2015-03-16 00:00:00