Abstract:
:The recently evolved field of synthetic biology has revolutionized the way we think of biology as an "engineerable" discipline. The newly sprouted branch is constantly in need of simple, cost-effective and automatable DNA-assembly methods. We have developed a reliable DNA-assembly system, ZeBRα (Zero-Background Redα), for cloning multiple DNA-fragments seamlessly with very high efficiency. The hallmarks of ZeBRα are the greatly reduced hands-on time and costs and yet excellent efficiency and flexibility. ZeBRα combines a "zero-background vector" with a highly efficient in vitro recombination method. The suicide-gene in the vector acts as placeholder, and is replaced by the fragments-of-interest, ensuring the exclusive survival of the successful recombinants. Thereby the background from uncut or re-ligated vector is absent and screening for recombinant colonies is unnecessary. Multiple fragments-of-interest can be assembled into the empty vector by a recombinogenic E. coli-lysate (SLiCE) with a total time requirement of less than 48 h. We have significantly simplified the preparation of the high recombination-competent E. coli-lysate compared to the original protocol. ZeBRα is the least labor intensive among comparable state-of-the-art assembly/cloning methods without a trade-off in efficiency.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Richter D,Bayer K,Toesko T,Schuster Sdoi
10.1038/s41598-019-39768-0subject
Has Abstractpub_date
2019-02-27 00:00:00pages
2980issue
1issn
2045-2322pii
10.1038/s41598-019-39768-0journal_volume
9pub_type
杂志文章abstract::Nesfatin-1, a satiety molecule processed from nucleobindin2 (NUCB2), is implicated in visceral hypersensitivity in rats and colocalized with 5-hydroxytryptamine (5-HT) in the dorsal raphe nucleus (DRN). Maternal separation (MS) in rats contributes to visceral hypersensitivity via elevated expression of 5-HT in the DRN...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-27592-x
更新日期:2018-06-19 00:00:00
abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title:Scientific reports
pub_type: 已发布勘误
doi:10.1038/s41598-020-75952-3
更新日期:2020-10-29 00:00:00
abstract::Light-sheet microscopy enables considerable speed and phototoxicity gains, while quantitative-phase imaging confers label-free recognition of cells and organelles, and quantifies their number-density that, thermodynamically, is more representative of metabolism than size. Here, we report the fusion of these two imagin...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-76730-x
更新日期:2020-11-19 00:00:00
abstract::Emotional expressions of others are salient biological stimuli that automatically capture attention and prepare us for action. We investigated the early cortical dynamics of automatic visual discrimination of fearful body expressions by monitoring cortical activity using magnetoencephalography. We show that right pari...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep24831
更新日期:2016-04-20 00:00:00
abstract::We developed a novel, erythropoietin-derived, non-erythropoiesis, cyclic helix B peptide (CHBP) that displays potent renoprotection against acute kidney injury (AKI). To determine the mechanism of CHBP-mediated protection, we investigated the proteomic profile of mice treated with CHBP in a kidney ischemia-reperfusion...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep18045
更新日期:2015-12-10 00:00:00
abstract::Artificial sheet materials, known as MetaSurfaces, have been applied to fully control both space and surface waves due to their exceptional abilities to dynamically tailor wave fronts and polarization states, while maintaining small footprints. However, previous and current designs and manufactured MetaSurfaces are li...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-36451-8
更新日期:2019-02-28 00:00:00
abstract::Secondary ion mass spectrometry is an excellent technique of analytical chemistry, where primary ions sputter a solid sample generating the secondary ions which are determined. Although the ion yield is inherently low, it can be enhanced by using a post-ionization of sputtered neutral species. Our novel approach integ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-06562-9
更新日期:2017-07-20 00:00:00
abstract::Cellular therapies for liver diseases and in vitro models for drug testing both require functional human hepatocytes (Hum-H), which have unfortunately been limited due to the paucity of donor liver tissues. Human pluripotent stem cells (hPSCs) represent a promising and potentially unlimited cell source to derive Hum-H...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep16884
更新日期:2015-11-23 00:00:00
abstract::Energetic ions have been widely used to evaluate the irradiation tolerance of structural materials for nuclear power applications and to modify material properties. It is important to understand the defect production, annihilation and migration mechanisms during and after collision cascades. In this study, single crys...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep19994
更新日期:2016-02-01 00:00:00
abstract::Diabetes is a chronic metabolic disease that causes blood glucose (BG) concentration to make dangerous excursions outside its physiological range. Measuring the fraction of time spent by BG outside this range, and, specifically, the time-below-range (TBR), is a clinically common way to quantify the effectiveness of th...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-75079-5
更新日期:2020-10-23 00:00:00
abstract::We propose a method to simulate spin models in trapped ions using a digital-analog approach, consisting in a suitable gate decomposition in terms of analog blocks and digital steps. In this way, we show that the quantum dynamics of an enhanced variety of spin models could be implemented with substantially less number ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep30534
更新日期:2016-07-29 00:00:00
abstract::Hippocampal volumes are smaller in psychiatric disorder patients and lower levels of hippocampal neurogenesis are the hypothesized cause. Understanding which molecular processes regulate hippocampal progenitor differentiation might aid in the identification of novel drug targets that can promote larger hippocampal vol...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-15042-z
更新日期:2017-11-08 00:00:00
abstract::Hepatocyte-specific HMGB1 deletion has been found to worsen the injury and inflammation in liver ischemia-reperfusion injury (IRI), highlighting a role for intracellular HMGB1 in cellular protection. Down-regulation of nuclear HMGB1 by small interfering RNA (siRNA) might not only decrease its injurious extracellular r...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep46272
更新日期:2017-04-06 00:00:00
abstract::Donor-specific CD4+CD127-CD25+FOXP3+ regulatory T cells (AgTregs) have the potential to induce clinical transplant tolerance; however, their expansion ex vivo remains challenging. We optimized a novel expansion protocol to stimulate donor-specific Tregs using soluble 4-trimer CD40 ligand (CD40L)-activated donor B cell...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-19621-6
更新日期:2018-01-18 00:00:00
abstract::The human connectome has become the very frequent subject of study of brain-scientists, psychologists and imaging experts in the last decade. With diffusion magnetic resonance imaging techniques, united with advanced data processing algorithms, today we are able to compute braingraphs with several hundred, anatomicall...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-68914-2
更新日期:2020-07-20 00:00:00
abstract::Graphene thin films have great potential to function as transparent electrodes in organic electronic devices, due to their excellent conductivity and high transparency. Recently, organic light-emitting diodes (OLEDs)have been successfully demonstrated to possess high luminous efficiencies with p-doped graphene anodes....
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep09693
更新日期:2015-04-20 00:00:00
abstract::Earlier studies showed that endogenous estrogens have neuroprotective effect against oxidative damage. The present study seeks to investigate the protective effect of various endogenous estrogen metabolites against oxidative neurotoxicity in vitro and in vivo. Using immortalized mouse hippocampal neuronal cells as an ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-62984-y
更新日期:2020-04-29 00:00:00
abstract::Primary biliary cholangitis (PBC) is an autoimmune liver disease characterized by the destruction of interlobular biliary ductules, which progressively leads to cholestasis, hepatic fibrosis, cirrhosis, and eventually liver failure. Several mouse models have been used to clarify the pathogenesis of PBC and are general...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-15661-6
更新日期:2017-11-10 00:00:00
abstract::Ovarian cancer (OC) is the most lethal gynecological carcinoma due to the lack of diagnostic markers and effective drug targets. Discovery of new therapeutic targets in OC to improve the treatment outcome is urgently needed. We performed proteomic analysis of OC specimens and the paired normal tissues and revealed tha...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-48992-7
更新日期:2019-09-02 00:00:00
abstract::In this study, we measured the human epidermal growth factor receptor 2 (HER2) copy number in both tissue and plasma samples of gastric cancer patients by using droplet digital polymerase chain reaction (ddPCR) method. Eighty gastric cancer patients were enrolled and both formalin-fixed and paraffin-embedded tissue an...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-60897-4
更新日期:2020-03-06 00:00:00
abstract::The plasmonic waveguide made of uniform corrugated metallic strip can support and guide spoof surface plasmon polaritons (SSPPs) with high confinements. Here, we propose periodically-modulated plasmonic waveguide composed of non-uniform corrugated metallic strip to convert SSPPs to radiating waves, in which the main b...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep29600
更新日期:2016-07-12 00:00:00
abstract::Transient gene expression approaches are valuable tools for rapid introduction of genes of interest and characterization of their functions in plants. Although agroinfiltration is the most effectively and routinely used method for transient expression of multiple genes in various plant species, this approach has been ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep22436
更新日期:2016-02-29 00:00:00
abstract::Ehrlichia chaffeensis, a tick-transmitted rickettsial bacterium, is the causative agent of human monocytic ehrlichiosis. Biochemical characterization of this and other related Rickettsiales remains a major challenge, as they require a host cell for their replication. We investigated the use of an axenic medium for E. ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-27574-z
更新日期:2018-06-18 00:00:00
abstract::Mammals typically keep their body temperature (Tb) within a narrow limit with changing environmental conditions. There are indications that some wild ungulates can exhibit certain forms of energy saving mechanisms when ambient temperatures are low and/or food is scarce. Therefore, the aim of the study was to determine...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-07946-7
更新日期:2017-08-08 00:00:00
abstract::For many malignancies, inflammation-based scores correlate with survival. The neutrophil-to-lymphocyte ratio (NLR) and prognostic nutritional index (PNI) are immunonutritional indices associated with postoperative outcomes in patients with hepatocellular carcinoma (HCC). We evaluated whether a combined preoperative NL...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-13239-w
更新日期:2017-10-24 00:00:00
abstract::Chronic wounds affect millions of patients around the world and their treatment is challenging as the early signs indicating their development are subtle. In addition, a type of chronic wound, known as pressure ulcer, develops in patients with limited mobility. Infection and frequent bleeding are indicators of chronic...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep28949
更新日期:2016-06-29 00:00:00
abstract::A novel turn-off colorimetric sensor for sequence-specific recognition of single-stranded DNA (ssDNA) was established by combining Y-shaped DNA duplex and G-quadruplex-hemin DNAzyme. A G-rich single-stranded DNA (Oligo-1) displays peroxidase mimicking catalytic activity due to the specific binding with hemin in the pr...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-30529-z
更新日期:2018-08-13 00:00:00
abstract::The observation and analysis of dendritic spines morphological changes poses a major challenge in neuroscience studies. The alterations of their density and/or morphology are indicators of the cellular processes involved in neural plasticity underlying learning and memory, and are symptomatic in neuropsychiatric disor...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-21753-8
更新日期:2018-02-23 00:00:00
abstract::High-performance ZnO-Pr6O11 thin-film varistors were fabricated simply by hot-dipping oxygen-deficient zinc oxide thin films in Pr6O11 powder. The films had a composition of ZnO0.81 and a thickness of about 200 nm, which were deposited by radio frequency magnetron sputtering a sintered zinc oxide ceramic target. Speci...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep41994
更新日期:2017-02-03 00:00:00
abstract::For the application of formic acid as a liquid organic hydrogen carrier, development of efficient catalysts for dehydrogenation of formic acid is a challenging topic, and most studies have so far focused on the composition of metals and supports, the size effect of metal nanoparticles, and surface chemistry of support...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep33502
更新日期:2016-09-26 00:00:00