Partially spatially coherent digital holographic microscopy and machine learning for quantitative analysis of human spermatozoa under oxidative stress condition.

Abstract:

:Semen quality assessed by sperm count and sperm cell characteristics such as morphology and motility, is considered to be the main determinant of men's reproductive health. Therefore, sperm cell selection is vital in assisted reproductive technology (ART) used for the treatment of infertility. Conventional bright field optical microscopy is widely utilized for the imaging and selection of sperm cells based on the qualitative analysis by experienced clinicians. In this study, we report the development of a highly sensitive quantitative phase microscopy (QPM) using partially spatially coherent light source, which is a label-free, non-invasive and high-resolution technique to quantify various biophysical parameters. The partial spatial coherence nature of light source provides a significant improvement in spatial phase sensitivity and hence reconstruction of the phase of the entire sperm cell is demonstrated, which was otherwise not possible using highly spatially coherent light source. High sensitivity of the system enables quantitative phase imaging of the specimens having very low refractive index contrast with respect to the medium like tail of the sperm cells. Further, it also benefits with accurate quantification of 3D-morphological parameters of sperm cells which might be helpful in the infertility treatment. The quantitative analysis of more than 2500 sperm cells under hydrogen peroxide (H2O2) induced oxidative stress condition is demonstrated. It is further correlated with motility of sperm cell to study the effect of oxidative stress on healthy sperm cells. The results exhibit a decrease in the maximum phase values of the sperm head as well as decrease in the sperm cell's motility with increasing oxidative stress, i.e., H2O2 concentration. Various morphological and texture parameters were extracted from the phase maps and subsequently support vector machine (SVM) based machine learning algorithm is employed for the classification of the control and the stressed sperms cells. The algorithm achieves an area under the receiver operator characteristic (ROC) curve of 89.93% based on the all morphological and texture parameters with a sensitivity of 91.18%. The proposed approach can be implemented for live sperm cells selection in ART procedure for the treatment of infertility.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Dubey V,Popova D,Ahmad A,Acharya G,Basnet P,Mehta DS,Ahluwalia BS

doi

10.1038/s41598-019-39523-5

subject

Has Abstract

pub_date

2019-03-05 00:00:00

pages

3564

issue

1

issn

2045-2322

pii

10.1038/s41598-019-39523-5

journal_volume

9

pub_type

杂志文章
  • Distinct roles for primate caudate dopamine D1 and D2 receptors in visual discrimination learning revealed using shRNA knockdown.

    abstract::The striatum plays important motor, associative and cognitive roles in brain functions. However, the rodent dorsolateral (the primate putamen) and dorsomedial (the primate caudate nucleus) striatum are not anatomically separated, making it difficult to distinguish their functions. By contrast, anatomical separation ex...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35809

    authors: Takaji M,Takemoto A,Yokoyama C,Watakabe A,Mizukami H,Ozawa K,Onoe H,Nakamura K,Yamamori T

    更新日期:2016-11-02 00:00:00

  • RNA polymerase II subunit D is essential for zebrafish development.

    abstract::DNA-directed RNA polymerase II (pol II) is composed of ten core and two dissociable subunits. The dissociable subcomplex is a heterodimer of Rpb4/Polr2d and Rpb7/Polr2g, which are encoded by RPB4/polr2d and RPB7/polr2g genes, respectively. Functional studies of Rpb4/Polr2d in yeast have revealed that Rpb4 plays a role...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70110-1

    authors: Maeta M,Kataoka M,Nishiya Y,Ogino K,Kashima M,Hirata H

    更新日期:2020-08-06 00:00:00

  • Reconstruction of thermotolerant yeast by one-point mutation identified through whole-genome analyses of adaptively-evolved strains.

    abstract::Saccharomyces cerevisiae is used as a host strain in bioproduction, because of its rapid growth, ease of genetic manipulation, and high reducing capacity. However, the heat produced during the fermentation processes inhibits the biological activities and growth of the yeast cells. We performed whole-genome sequencing ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23157

    authors: Satomura A,Miura N,Kuroda K,Ueda M

    更新日期:2016-03-17 00:00:00

  • Fan-out Estimation in Spin-based Quantum Computer Scale-up.

    abstract::Solid-state spin-based qubits offer good prospects for scaling based on their long coherence times and nexus to large-scale electronic scale-up technologies. However, high-threshold quantum error correction requires a two-dimensional qubit array operating in parallel, posing significant challenges in fabrication and c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13308-0

    authors: Nguyen T,Hill CD,Hollenberg LCL,James MR

    更新日期:2017-10-17 00:00:00

  • Imitation in Angelman syndrome: the role of social engagement.

    abstract::Individuals with Angelman syndrome (AS) are characterized by severe cognitive impairments alongside an enhanced drive for social engagement. As knowledge on imitation skills in this population is limited, we conducted the first controlled study of imitation in AS. We examined how 23 individuals with AS and 21 typicall...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72079-3

    authors: Micheletti S,Vivanti G,Renzetti S,Martelli P,Calza S,“Imitation in Angelman” Study Group.,Fazzi E

    更新日期:2020-10-02 00:00:00

  • The effects of URAT1/SLC22A12 nonfunctional variants, R90H and W258X, on serum uric acid levels and gout/hyperuricemia progression.

    abstract::Urate transporter 1 (URAT1/SLC22A12), a urate transporter gene, is a causative gene for renal hypouricemia type 1. Among several reported nonsynonymous URAT1 variants, R90H (rs121907896) and W258X (rs121907892) are frequent causative mutations for renal hypouricemia. However, no case-control study has evaluated the re...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/srep20148

    authors: Sakiyama M,Matsuo H,Shimizu S,Nakashima H,Nakamura T,Nakayama A,Higashino T,Naito M,Suma S,Hishida A,Satoh T,Sakurai Y,Takada T,Ichida K,Ooyama H,Shimizu T,Shinomiya N

    更新日期:2016-01-29 00:00:00

  • Three cooperative mechanisms required for recovery after brain damage.

    abstract::Stroke is one of the main causes of human disabilities. Experimental observations indicate that several mechanisms are activated during the recovery of functional activity after a stroke. Here we unveil how the brain recovers by explaining the role played by three mechanisms: Plastic adaptation, hyperexcitability and ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50946-y

    authors: Berger D,Varriale E,van Kessenich LM,Herrmann HJ,de Arcangelis L

    更新日期:2019-11-01 00:00:00

  • Trajectory analysis quantifies transcriptional plasticity during macrophage polarization.

    abstract::In recent years, macrophages have been shown to be tremendously plastic in both in vitro and in vivo settings; however, it remains unclear whether macrophages retain any persistent memory of past polarization states which may then impact their future repolarization to new states. Here, we perform deep transcriptomic p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-68766-w

    authors: Liu SX,Gustafson HH,Jackson DL,Pun SH,Trapnell C

    更新日期:2020-07-23 00:00:00

  • Exciton-like electromagnetic excitations in non-ideal microcavity supercrystals.

    abstract::We study localized photonic excitations in a quasi-two-dimensional non-ideal binary microcavity lattice with use of the virtual crystal approximation. The effect of point defects (vacancies) on the excitation spectrum is investigated by numerical modelling. We obtain the dispersion and the energy gap of the electromag...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06945

    authors: Rumyantsev V,Fedorov S,Gumennyk K,Sychanova M,Kavokin A

    更新日期:2014-11-06 00:00:00

  • Labeling and analysis of chicken taste buds using molecular markers in oral epithelial sheets.

    abstract::In chickens, the sensory organs for taste are the taste buds in the oral cavity, of which there are ~240-360 in total number as estimated by scanning electron microscopy (SEM). There is not an easy way to visualize all taste buds in chickens. Here, we report a highly efficient method for labeling chicken taste buds in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37247

    authors: Rajapaksha P,Wang Z,Venkatesan N,Tehrani KF,Payne J,Swetenburg RL,Kawabata F,Tabata S,Mortensen LJ,Stice SL,Beckstead R,Liu HX

    更新日期:2016-11-17 00:00:00

  • Recruitment of parvalbumin and somatostatin interneuron inputs to adult born dentate granule neurons.

    abstract::GABA is a key regulator of adult-born dentate granule cell (abDGC) maturation so mapping the functional connectivity between abDGCs and local interneurons is required to understand their development and integration into the hippocampal circuit. We recorded from birthdated abDGCs in mice and photoactivated parvalbumin ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74385-2

    authors: Remmers CL,Castillon CCM,Armstrong JN,Contractor A

    更新日期:2020-10-16 00:00:00

  • The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells.

    abstract::Insulin secretion from pancreatic beta-cells is dependent on zinc ions as essential components of insulin crystals, zinc transporters are thus involved in the insulin secretory process. Zip14 (SLC39a14) is a zinc importing protein that has an important role in glucose homeostasis. Zip14 knockout mice display hyperinsu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44954-1

    authors: Maxel T,Smidt K,Petersen CC,Honoré B,Christensen AK,Jeppesen PB,Brock B,Rungby J,Palmfeldt J,Larsen A

    更新日期:2019-06-13 00:00:00

  • Contextual experience modifies functional connectome indices of topological strength and efficiency.

    abstract::Stimuli presented at short temporal delays before functional magnetic resonance imaging (fMRI) can have a robust impact on the organization of synchronous activity in resting state networks. This presents an opportunity to investigate how sensory, affective and cognitive stimuli alter functional connectivity in rodent...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76935-0

    authors: Pompilus M,Colon-Perez LM,Grudny MM,Febo M

    更新日期:2020-11-16 00:00:00

  • Evolving pneumococcal serotypes and sequence types in relation to high antibiotic stress and conditional pneumococcal immunization.

    abstract::In Taiwan, beginning in 2013, the 13-valent pneumococcal conjugate vaccine (PCV13) was provided free of charge to children 2-5 years of age. In 2014, this was extended to children 1-5 years old. During 2012-2014, 953 cases of culture-confirmed pneumococcal disease (CCPD), including 104 invasive pneumococcal disease (I...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15843

    authors: Su LH,Kuo AJ,Chia JH,Li HC,Wu TL,Feng Y,Chiu CH

    更新日期:2015-11-02 00:00:00

  • Toward a more accurate view of human B-cell repertoire by next-generation sequencing, unbiased repertoire capture and single-molecule barcoding.

    abstract::B-cell repertoire analysis using next-generation sequencing has become a valuable tool for interrogating the genetic record of humoral response to infection. However, key obstacles such as low throughput, short read length, high error rate, and undetermined bias of multiplex PCR method have hindered broader applicatio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06778

    authors: He L,Sok D,Azadnia P,Hsueh J,Landais E,Simek M,Koff WC,Poignard P,Burton DR,Zhu J

    更新日期:2014-10-27 00:00:00

  • Multiple uprising invasions of Pelophylax water frogs, potentially inducing a new hybridogenetic complex.

    abstract::The genetic era has revolutionized our perception of biological invasions. Yet, it is usually too late to understand their genesis for efficient management. Here, we take the rare opportunity to reconstruct the scenario of an uprising invasion of the famous water frogs (Pelophylax) in southern France, through a fine-s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06655-5

    authors: Dufresnes C,Denoël M,di Santo L,Dubey S

    更新日期:2017-07-26 00:00:00

  • Concurrence of oral and genital human papillomavirus infection in healthy men: a population-based cross-sectional study in rural China.

    abstract::Human papillomavirus (HPV) infection, a primary cause of genital cancer, is also related to the increasing incidence of oropharyngeal cancer among young men. Relatively little is known about the concurrence of oral and genital infection among healthy individuals. Oral and genital swab exfoliated cells were collected s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15637

    authors: Liu F,Hang D,Deng Q,Liu M,Xi L,He Z,Zhang C,Sun M,Liu Y,Li J,Pan Y,Ning T,Guo C,Liang Y,Xu R,Zhang L,Cai H,Ke Y

    更新日期:2015-10-27 00:00:00

  • CPT1C promotes human mesenchymal stem cells survival under glucose deprivation through the modulation of autophagy.

    abstract::Human mesenchymal stem cells (hMSCs) are widely used in regenerative medicine. In some applications, they must survive under low nutrient conditions engendered by avascularity. Strategies to improve hMSCs survival may be of high relevance in tissue engineering. Carnitine palmitoyltransferase 1 C (CPT1C) is a pseudoenz...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25485-7

    authors: Roa-Mansergas X,Fadó R,Atari M,Mir JF,Muley H,Serra D,Casals N

    更新日期:2018-05-03 00:00:00

  • Accelerating recovery from jet lag: prediction from a multi-oscillator model and its experimental confirmation in model animals.

    abstract::The endogenous circadian clock drives oscillations that are completely synchronized with the environmental day-night rhythms with a period of approximately 24 hours. Temporal misalignment between one's internal circadian clock and the external solar time often occurs in shift workers and long-distance travelers; such ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep46702

    authors: Kori H,Yamaguchi Y,Okamura H

    更新日期:2017-04-26 00:00:00

  • Evaluation of reproductive performances of the common octopus (Octopus vulgaris) reared in water recirculation systems and fed different diets.

    abstract::The reproductive performance of Octopus vulgaris broodstocks fed two different diets (mixed fish [F group, BW 1,048.14 g] or mixed crustaceans [C group, BW 998.44 g]) was analyzed using an experimental recirculating aquaculture system consisting of a tank equipped with spawning and incubation chambers. A total of 8 fe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72151-y

    authors: Casalini A,Roncarati A,Emmanuele P,Guercilena N,Bonaldo A,Parma L,Mordenti O

    更新日期:2020-09-17 00:00:00

  • A defined glycosylation regulatory network modulates total glycome dynamics during pluripotency state transition.

    abstract::Embryonic stem cells (ESCs) and epiblast-like cells (EpiLCs) recapitulate in vitro the epiblast first cell lineage decision, allowing characterization of the molecular mechanisms underlying pluripotent state transition. Here, we performed a comprehensive and comparative analysis of total glycomes of mouse ESCs and Epi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79666-4

    authors: Pecori F,Yokota I,Hanamatsu H,Miura T,Ogura C,Ota H,Furukawa JI,Oki S,Yamamoto K,Yoshie O,Nishihara S

    更新日期:2021-01-14 00:00:00

  • Enhancing nanoparticle-based visible detection by controlling the extent of aggregation.

    abstract::Visible indication based on the aggregation of colloidal nanoparticles (NPs) is highly advantageous for rapid on-site detection of biological entities, which even untrained persons can perform without specialized instrumentation. However, since the extent of aggregation should exceed a certain minimum threshold to pro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep00456

    authors: Lim S,Koo OK,You YS,Lee YE,Kim MS,Chang PS,Kang DH,Yu JH,Choi YJ,Gunasekaran S

    更新日期:2012-01-01 00:00:00

  • Dynamical Analysis of Standing Balance Control on Sloped Surfaces in Individuals with Lumbar Disc Herniation.

    abstract::The changes of balance control mechanism caused by lumbar disc herniation (LDH) has not been well understood. This study aimed to investigate the effects of LDH on the balance control during standing on sloped surfaces. Ten patients with LDH and 10 gender- and age-matched healthy subjects were instructed to stand quie...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58455-z

    authors: Li J,Zhang Y,Song S,Hou Y,Hong Y,Yue S,Li K

    更新日期:2020-02-03 00:00:00

  • The 3D architecture of a bacterial swarm has implications for antibiotic tolerance.

    abstract::Swarming bacteria are an example of a complex, active biological system, where high cell density and super-diffusive cell mobility confer survival advantages to the group as a whole. Previous studies on the dynamics of the swarm have been limited to easily observable regions at the advancing edge of the swarm where ce...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34192-2

    authors: Partridge JD,Ariel G,Schvartz O,Harshey RM,Be'er A

    更新日期:2018-10-25 00:00:00

  • Contributions of multiple refugia during the last glacial period to current mainland populations of Korean pine (Pinus koraiensis).

    abstract::The northern microrefugia that existed during the Last Glacial Maximum (LGM) are a key factor in the demographic history of species. Pinus koraiensis has a unique distribution in northeast Asia. The Changbai Mountains and the Korean peninsula (CM/KP) are usually considered to be the LGM refugia for P. koraiensis. Howe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18608

    authors: Bao L,Kudureti A,Bai W,Chen R,Wang T,Wang H,Ge J

    更新日期:2015-12-22 00:00:00

  • Using proximity extension proteomics assay to discover novel biomarkers associated with circulating leptin levels in patients with type 2 diabetes.

    abstract::We aimed to discover novel associations between leptin and circulating proteins which could link leptin to the development of cardiovascular disease in patients with type 2 diabetes (T2DM). In a discovery phase, we investigated associations between 88 plasma proteins, assessed with a proximity extension assay, and pla...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69473-2

    authors: Vavruch C,Nowak C,Feldreich T,Östgren CJ,Sundström J,Söderberg S,Lind L,Nyström F,Ärnlöv J

    更新日期:2020-08-04 00:00:00

  • A unique ~12 ka subaerial record of rift-transform triple-junction tectonics, NE Iceland.

    abstract::In northern Iceland the European-North American plate boundary is broad and complex but includes a remarkable subaerial triple-junction intersection between the Husavik-Flatey Fault (HFF) dextral transform and rifting in the Northern Volcanic Zone. Fortuitously, the triple junction occurs in a sheet of ~12 ka pahoehoe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45903-8

    authors: Rust D,Whitworth M

    更新日期:2019-07-04 00:00:00

  • Genetic connection between cell-wall composition and grain yield via parallel QTL analysis in indica and japonica subspecies.

    abstract::Grain yield is a complicated trait, which is highly associated with biomass productivity. The cell wall is a central element of biomass, and its biogenesis contributes to plant architecture and development. However, the genetic link between cell-wall property and grain yield is largely unclear. Here, we report on iden...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12903-5

    authors: Xu Z,Li S,Zhang C,Zhang B,Zhu K,Zhou Y,Liu Q

    更新日期:2017-10-02 00:00:00

  • Exploration of miRNA families for hypotheses generation.

    abstract::Technological improvements have resulted in increased discovery of new microRNAs (miRNAs) and refinement and enrichment of existing miRNA families. miRNA families are important because they suggest a common sequence or structure configuration in sets of genes that hint to a shared function. Exploratory tools to enhanc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02940

    authors: Kamanu TK,Radovanovic A,Archer JA,Bajic VB

    更新日期:2013-10-15 00:00:00

  • Multiple specialised goose-type lysozymes potentially compensate for an exceptional lack of chicken-type lysozymes in Atlantic cod.

    abstract::Previous analyses of the Atlantic cod genome showed unique combinations of lacking and expanded number of genes for the immune system. The present study examined lysozyme activity, lysozyme gene distribution and expression in cod. Enzymatic assays employing specific bacterial lysozyme inhibitors provided evidence for ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28318

    authors: Seppola M,Bakkemo KR,Mikkelsen H,Myrnes B,Helland R,Irwin DM,Nilsen IW

    更新日期:2016-06-21 00:00:00