Origin and evolution of plexins, semaphorins, and Met receptor tyrosine kinases.

Abstract:

:The transition from unicellular to multicellular organisms poses the question as to when genes that regulate cell-cell interactions emerged during evolution. The receptor and ligand pairing of plexins and semaphorins regulates cellular interactions in a wide range of developmental and physiological contexts. We surveyed here genomes of unicellular eukaryotes and of non-bilaterian and bilaterian Metazoa and performed phylogenetic analyses to gain insight into the evolution of plexin and semaphorin families. Remarkably, we detected plexins and semaphorins in unicellular choanoflagellates, indicating their evolutionary origin in a common ancestor of Choanoflagellida and Metazoa. The plexin domain structure is conserved throughout all clades; in contrast, semaphorins are structurally diverse. Choanoflagellate semaphorins are transmembrane proteins with multiple fibronectin type III domains following the N-terminal Sema domain (termed Sema-FN). Other previously not yet described semaphorin classes include semaphorins of Ctenophora with tandem immunoglobulin domains (Sema-IG) and secreted semaphorins of Echinoderamata (Sema-SP, Sema-SI). Our study also identified Met receptor tyrosine kinases (RTKs), which carry a truncated plexin extracellular domain, in several bilaterian clades, indicating evolutionary origin in a common ancestor of Bilateria. In addition, a novel type of Met-like RTK with a complete plexin extracellular domain was detected in Lophotrochozoa and Echinodermata (termed Met-LP RTK). Our findings are consistent with an ancient function of plexins and semaphorins in regulating cytoskeletal dynamics and cell adhesion that predates their role as axon guidance molecules.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Junqueira Alves C,Yotoko K,Zou H,Friedel RH

doi

10.1038/s41598-019-38512-y

subject

Has Abstract

pub_date

2019-02-13 00:00:00

pages

1970

issue

1

issn

2045-2322

pii

10.1038/s41598-019-38512-y

journal_volume

9

pub_type

杂志文章
  • Novel multilayer TiO2 heterojunction decorated by low g-C3N4 content and its enhanced photocatalytic activity under UV, visible and solar light irradiation.

    abstract::In this paper, we used a facile ball milling, microwave radiation and heating treatment method to achieve the surface modification of TiO2 with low g-C3N4 concentration, and a multilayer heterojunction composite with TiO2 as the main part and g-C3N4 as the modification agent was obtained. The obtained materials were a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42438-w

    authors: Wang Y,Yu J,Peng W,Tian J,Yang C

    更新日期:2019-04-11 00:00:00

  • Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps.

    abstract::Cryo-electron microscopy (cryo-EM) has become a leading technology for determining protein structures. Recent advances in this field have allowed for atomic resolution. However, predicting the backbone trace of a protein has remained a challenge on all but the most pristine density maps (<2.5 Å resolution). Here we in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60598-y

    authors: Si D,Moritz SA,Pfab J,Hou J,Cao R,Wang L,Wu T,Cheng J

    更新日期:2020-03-09 00:00:00

  • Crystal structures of thiamine monophosphate kinase from Acinetobacter baumannii in complex with substrates and products.

    abstract::Thiamine monophosphate kinase (ThiL) catalyzes the last step of thiamine pyrophosphate (TPP) synthesis, the ATP-dependent phosphorylation of thiamine monophosphate (TMP) to thiamine pyrophosphate. We solved the structure of ThiL from the human pathogen A. baumanii in complex with a pair of substrates TMP and a non-hyd...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-40558-x

    authors: Sullivan AH,Dranow DM,Horanyi PS,Lorimer DD,Edwards TE,Abendroth J

    更新日期:2019-03-13 00:00:00

  • Multiplex amplicon sequencing for microbe identification in community-based culture collections.

    abstract::Microbiome analysis using metagenomic sequencing has revealed a vast microbial diversity associated with plants. Identifying the molecular functions associated with microbiome-plant interaction is a significant challenge concerning the development of microbiome-derived technologies applied to agriculture. An alternati...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29543

    authors: Armanhi JS,de Souza RS,de Araújo LM,Okura VK,Mieczkowski P,Imperial J,Arruda P

    更新日期:2016-07-12 00:00:00

  • Mechanized transplanting with side deep fertilization increases yield and nitrogen use efficiency of rice in Eastern China.

    abstract::The application of nitrogen (N) fertilizer deep in soil at the same time as mechanical transplanting of rice seedlings is an effective alternative to conventional broadcasting of fertilizer, but its effects on yields and profitability have not been analysed in detail. Here, we analysed the effects of a side deep appli...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42039-7

    authors: Zhu C,Xiang J,Zhang Y,Zhang Y,Zhu D,Chen H

    更新日期:2019-04-04 00:00:00

  • Optical properties, spectral, and lifetime measurements of central nervous system tumors in humans.

    abstract::A key challenge of central nervous system tumor surgery is to discriminate between brain regions infiltrated by tumor cells and surrounding healthy tissue. Although monitoring of autofluorescence could potentially be an efficient way to provide reliable information for these regions, we found little information on thi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14381-1

    authors: Poulon F,Mehidine H,Juchaux M,Varlet P,Devaux B,Pallud J,Abi Haidar D

    更新日期:2017-10-25 00:00:00

  • Stepwise PathNet: a layer-by-layer knowledge-selection-based transfer learning algorithm.

    abstract::Some neural network can be trained by transfer learning, which uses a pre-trained neural network as the source task, for a small target task's dataset. The performance of the transfer learning depends on the knowledge (i.e., layers) selected from the pre-trained network. At present, this knowledge is usually chosen by...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64165-3

    authors: Imai S,Kawai S,Nobuhara H

    更新日期:2020-05-18 00:00:00

  • Sensorimotor transformation via sparse coding.

    abstract::Sensorimotor transformation is indispensable to the accurate motion of the human body in daily life. For instance, when we grasp an object, the distance from our hands to an object needs to be calculated by integrating multisensory inputs, and our motor system needs to appropriately activate the arm and hand muscles t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09648

    authors: Takiyama K

    更新日期:2015-04-29 00:00:00

  • Preliminary study of confounding factors of elastography and the application of fine-needle aspiration in thyroid nodules with indeterminate elastography.

    abstract::To investigate confounding factors of real-time ultrasound elastography (RTE) and to evaluate the diagnostic performance of ultrasound (US)-guided FNA for thyroid nodules with indeterminate elastography compared with conventional US. This study included 244 nodules with indeterminate elastography caused by several con...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18121-3

    authors: Wu Q,Qu Y,Zang X,Li Y,Yi X,Wang Y,Hu B

    更新日期:2017-12-21 00:00:00

  • Comparative assessment of transmission-blocking vaccine candidates against Plasmodium falciparum.

    abstract::Malaria transmission-blocking vaccines (TBVs) target the development of Plasmodium parasites within the mosquito, with the aim of preventing malaria transmission from one infected individual to another. Different vaccine platforms, mainly protein-in-adjuvant formulations delivering the leading candidate antigens, have...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11193

    authors: Kapulu MC,Da DF,Miura K,Li Y,Blagborough AM,Churcher TS,Nikolaeva D,Williams AR,Goodman AL,Sangare I,Turner AV,Cottingham MG,Nicosia A,Straschil U,Tsuboi T,Gilbert SC,Long CA,Sinden RE,Draper SJ,Hill AV,Cohuet A,

    更新日期:2015-06-11 00:00:00

  • Role of vocal tract characteristics in individual discrimination by Japanese macaques (Macaca fuscata).

    abstract::The Japanese macaque (Macaca fuscata) exhibits a species-specific communication sound called the "coo call" to locate group members and maintain within-group contact. Monkeys have been demonstrated to be capable of discriminating between individuals based only on their voices, but there is still debate regarding how t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep32042

    authors: Furuyama T,Kobayasi KI,Riquimaroux H

    更新日期:2016-08-23 00:00:00

  • Exploring the association of Bone Alkaline Phosphatases And Hearing Loss.

    abstract::Hearing loss becomes increasingly common with age and affects quality of life. Recently, scientists have published articles about the relationship between metabolic disease and hearing loss. Metabolic disease was previously found to be highly related to an increase in alkaline phosphatase. Thus, there may be an indire...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章,多中心研究

    doi:10.1038/s41598-020-60979-3

    authors: Lim ZW,Chen WL

    更新日期:2020-03-04 00:00:00

  • Genetic analysis of the molecular regulation of electric fields-guided glia migration.

    abstract::In a developing nervous system, endogenous electric field (EF) influence embryonic growth. We reported the EF-directed migration of both rat Schwann cells (SCs) and oligodendrocyte precursor cells (OPCs) and explored the molecular mechanism using RNA-sequencing assay. However, previous studies revealed the differentia...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74085-x

    authors: Yao L,Shippy T,Li Y

    更新日期:2020-10-08 00:00:00

  • Assessment of physical inactivity and locomotor dysfunction in adults with visual impairment.

    abstract::To evaluate the association between vision-related quality of life (QoL), physical inactivity, and locomotor dysfunction in subjects with visual impairment.This cross-sectional study included 215 visually impaired subjects recruited from six ophthalmology departments in Japan. The physical inactivity and locomotor dys...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30599-z

    authors: Inoue S,Kawashima M,Hiratsuka Y,Nakano T,Tamura H,Ono K,Murakami A,Tsubota K,Yamada M

    更新日期:2018-08-13 00:00:00

  • Long non-coding RNA PARTICLE bridges histone and DNA methylation.

    abstract::PARTICLE (Gene PARTICL- 'Promoter of MAT2A-Antisense RadiaTion Induced Circulating LncRNA) expression is transiently elevated following low dose irradiation typically encountered in the workplace and from natural sources. This long non-coding RNA recruits epigenetic silencers for cis-acting repression of its neighbour...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01875-1

    authors: O'Leary VB,Hain S,Maugg D,Smida J,Azimzadeh O,Tapio S,Ovsepian SV,Atkinson MJ

    更新日期:2017-05-11 00:00:00

  • CT changes of severe coronavirus disease 2019 based on prognosis.

    abstract::This study aimed to determine the characteristics of CT changes in patients with severe coronavirus disease 2019 (COVID-19) based on prognosis. Serial CT scans in 47 patients with severe COVID-19 were reviewed. The patterns, distribution and CT score of lung abnormalities were assessed. Scans were classified according...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78965-0

    authors: Liang B,Xie L,Yang F,Makamure J,Zhang L,Pang R,Du P,Fan W,Zheng C

    更新日期:2020-12-14 00:00:00

  • Reversal of established liver fibrosis by IC-2-engineered mesenchymal stem cell sheets.

    abstract::Chronic hepatitis viral infection, alcoholic intoxication, and obesity cause liver fibrosis, which progresses to decompensated liver cirrhosis, a disease for which medical demands cannot be met. Since there are currently no approved anti-fibrotic therapies for established liver fibrosis, the development of novel modal...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43298-0

    authors: Itaba N,Kono Y,Watanabe K,Yokobata T,Oka H,Osaki M,Kakuta H,Morimoto M,Shiota G

    更新日期:2019-05-02 00:00:00

  • Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics.

    abstract::Human respiratory syncytial virus (RSV) A ON1 genotype, first detected in 2010 in Ontario, Canada, has been documented in 21 countries to date. This study investigated persistence and transmission dynamics of ON1 by grouping 406 randomly selected RSV-positive specimens submitted to Public Health Ontario from August 20...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14268

    authors: Duvvuri VR,Granados A,Rosenfeld P,Bahl J,Eshaghi A,Gubbay JB

    更新日期:2015-09-30 00:00:00

  • Probing driving forces for binding between nanoparticles and amino acids by saturation-transfer difference NMR.

    abstract::As nanotechnology becomes increasingly used in biomedicine, it is important to have techniques by which to examine the structure and dynamics of biologically-relevant molecules on the surface of engineered nanoparticles. Previous work has shown that Saturation-Transfer Difference (STD)-NMR can be used to explore the i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69185-7

    authors: Xu H,Casabianca LB

    更新日期:2020-07-23 00:00:00

  • The intertropical convergence zone modulates intense hurricane strikes on the western North Atlantic margin.

    abstract::Most Atlantic hurricanes form in the Main Development Region between 9°N to 20°N along the northern edge of the Intertropical Convergence Zone (ITCZ). Previous research has suggested that meridional shifts in the ITCZ position on geologic timescales can modulate hurricane activity, but continuous and long-term storm r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21728

    authors: van Hengstum PJ,Donnelly JP,Fall PL,Toomey MR,Albury NA,Kakuk B

    更新日期:2016-02-24 00:00:00

  • Molecular basis of canalization in an ascidian species complex adapted to different thermal conditions.

    abstract::Canalization is a result of intrinsic developmental buffering that ensures phenotypic robustness under genetic variation and environmental perturbation. As a consequence, animal phenotypes are remarkably consistent within a species under a wide range of conditions, a property that seems contradictory to evolutionary c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16717

    authors: Sato A,Kawashima T,Fujie M,Hughes S,Satoh N,Shimeld SM

    更新日期:2015-11-18 00:00:00

  • Effects of symmetry-breaking on electromagnetic backscattering.

    abstract::Systems with a discrete rotational symmetry [Formula: see text] where [Formula: see text] that also have electromagnetic duality symmetry exhibit zero backscattering. The impact of breaking one of the two symmetries on the emerging backscattering has not yet been systematically studied. Here, we investigate the effect...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80347-5

    authors: Abdelrahman MI,Slivina E,Rockstuhl C,Fernandez-Corbaton I

    更新日期:2021-01-18 00:00:00

  • Biodegradability of woody film produced by solvent volatilisation of Japanese Beech solution.

    abstract::To address the problem of marine pollution from discarded plastics, we developed a highly biodegradable woody film, with almost the same components as wood, from the formic acid solution of ball-milled wood. We found that the woody film was not easily degraded by cultured solution of hand bacteria (phylum Proteobacter...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-57228-7

    authors: Nishiwaki-Akine Y,Kanazawa S,Matsuura N,Yamamoto-Ikemoto R

    更新日期:2020-01-16 00:00:00

  • Ag+ doped into azo-linked conjugated microporous polymer for volatile iodine capture and detection of heavy metal ions.

    abstract::We herein report the construction of a novel azo-linked conjugated microporous polymers (Ag@AzoTPE-CMP), which possesses permanent porous structure and Ag+ loading up of 7.62% in the skeleton as effective sorption sites. Ag@AzoTPE-CMP shows considerable adsorption capacity of iodine of 202 wt% in iodine vapor at 350 K...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32383-5

    authors: Liu M,Yao C,Liu C,Xu Y

    更新日期:2018-09-19 00:00:00

  • A novel HDAC inhibitor, CG200745, inhibits pancreatic cancer cell growth and overcomes gemcitabine resistance.

    abstract::Pancreatic cancer is predominantly lethal, and is primarily treated using gemcitabine, with increasing resistance. Therefore, novel agents that increase tumor sensitivity to gemcitabine are needed. Histone deacetylase (HDAC) inhibitors are emerging therapeutic agents, since HDAC plays an important role in cancer initi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41615

    authors: Lee HS,Park SB,Kim SA,Kwon SK,Cha H,Lee DY,Ro S,Cho JM,Song SY

    更新日期:2017-01-30 00:00:00

  • Metabolomic Response of Skeletal Muscle to Aerobic Exercise Training in Insulin Resistant Type 1 Diabetic Rats.

    abstract::The etiology of insulin resistance in Type 1 Diabetes (T1D) is unknown, however it affects approximately 20% of T1D patients. Intramyocellular lipids (IMCL) have been identified as a mechanism of insulin resistance. We examined skeletal muscle of T1D rats to determine if alterations in lipid metabolism were evident an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26379

    authors: Dotzert MS,Murray MR,McDonald MW,Olver TD,Velenosi TJ,Hennop A,Noble EG,Urquhart BL,Melling CW

    更新日期:2016-05-20 00:00:00

  • Pyridoxamine improves survival and limits cardiac dysfunction after MI.

    abstract::Advanced glycation end products (AGEs) play a key role in the progression of heart failure. Whether treatments limiting AGEs formation would prevent adverse left ventricular remodeling after myocardial infarction (MI) remain unknown. We investigated whether pyridoxamine (PM) could limit adverse cardiac outcome in MI. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16255-y

    authors: Deluyker D,Ferferieva V,Driesen RB,Verboven M,Lambrichts I,Bito V

    更新日期:2017-11-22 00:00:00

  • Dynamically correlated mutations drive human Influenza A evolution.

    abstract::Human Influenza A virus undergoes recurrent changes in the hemagglutinin (HA) surface protein, primarily involved in the human antibody recognition. Relevant antigenic changes, enabling the virus to evade host immune response, have been recognized to occur in parallel to multiple mutations at antigenic sites in HA. Ye...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02705

    authors: Tria F,Pompei S,Loreto V

    更新日期:2013-01-01 00:00:00

  • Chlamydia trachomatis infection of human endometrial stromal cells induces defective decidualisation and chemokine release.

    abstract::Miscarriage affects ~20% of pregnancies and maternal infections account for ~15% of early miscarriages. Chlamydia trachomatis (Ct) has been associated with miscarriage but the underlying mechanisms are unknown. Successful implantation requires endometrial stromal cell (ESC) decidualisation. Maintenance of pregnancy re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02223-z

    authors: Giakoumelou S,Wheelhouse N,Brown J,Wade J,Simitsidellis I,Gibson D,Saunders PTK,Horner P,Entrican G,Howie SEM,Horne AW

    更新日期:2017-05-17 00:00:00

  • Author Correction: CXXC5 as an unmethylated CpG dinucleotide binding protein contributes to estrogen-mediated cellular proliferation.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-66682-7

    authors: Ayaz G,Razizadeh N,Yaşar P,Kars G,Kahraman DC,Saatci Ö,Şahin Ö,Çetin-Atalay R,Muyan M

    更新日期:2020-06-16 00:00:00