Genome-wide polyadenylation site mapping datasets in the rice blast fungus Magnaporthe oryzae.

abstract：:The spotted hyena (Crocuta crocuta), one of the largest terrestrial predators native to sub-Saharan Africa, is well known for its matriarchal social system and large-sized social group in which larger females dominate smaller males. Spotted hyenas are highly adaptable predators as they both actively hunt prey and scav...

journal_title：Scientific data

authors： Yang C,Li F,Xiong Z,Koepfli KP,Ryder O,Perelman P,Li Q,Zhang G

更新日期：2020-04-28 00:00:00

abstract：:Lysosomes are the main degradative organelles of cells and involved in a variety of processes including the recycling of macromolecules, storage of compounds, and metabolic signaling. Despite an increasing interest in the proteomic analysis of lysosomes, no systematic study of sample preparation protocols for lysosome...

journal_title：Scientific data

authors： Ponnaiyan S,Akter F,Singh J,Winter D

更新日期：2020-02-26 00:00:00

abstract：:The zooplankter Calanus finmarchicus is a member of the so-called "Calanus Complex", a group of copepods that constitutes a key element of the Arctic polar marine ecosystem, providing a crucial link between primary production and higher trophic levels. Climate change induces the shift of C. finmarchicus to higher lati...

journal_title：Scientific data

authors： Payton L,Noirot C,Hoede C,Hüppe L,Last K,Wilcockson D,Ershova EA,Valière S,Meyer B

更新日期：2020-11-24 00:00:00

abstract：:Connective tissues such as tendon, ligament and skin are biological fibre composites comprising collagen fibrils reinforcing the weak proteoglycan-rich ground substance in extracellular matrix (ECM). One of the hallmarks of ageing of connective tissues is the progressive and irreversible change in the tissue mechanica...

journal_title：Scientific data

authors： Goh KL,Holmes DF,Lu YH,Kadler KE,Purslow PP

更新日期：2018-07-24 00:00:00

abstract：:Transparent evaluations of FAIRness are increasingly required by a wide range of stakeholders, from scientists to publishers, funding agencies and policy makers. We propose a scalable, automatable framework to evaluate digital resources that encompasses measurable indicators, open source tools, and participation guide...

journal_title：Scientific data

authors： Wilkinson MD,Dumontier M,Sansone SA,Bonino da Silva Santos LO,Prieto M,Batista D,McQuilton P,Kuhn T,Rocca-Serra P,Crosas M,Schultes E

更新日期：2019-09-20 00:00:00

abstract：:This paper describes the methodology of an ongoing project of constructing an East Asian climate database REACHES based on Chinese historical documents. The record source is Compendium of Meteorological Records of China in the Last 3000 Years which collects meteorology and climate related records from mainly official ...

journal_title：Scientific data

authors： Wang PK,Lin KE,Liao YC,Liao HM,Lin YS,Hsu CT,Hsu SM,Wan CW,Lee SY,Fan IC,Tan PH,Ting TT

更新日期：2018-12-18 00:00:00

abstract：:High-quality and high-throughput sequencing technologies are required for therapeutic and diagnostic analyses of human gut microbiota. Here, we evaluated the advantages and disadvantages of the various commercial sequencing platforms for studying human gut microbiota. We generated fecal bacterial sequences from 170 Ko...

journal_title：Scientific data

authors： Whon TW,Chung WH,Lim MY,Song EJ,Kim PS,Hyun DW,Shin NR,Bae JW,Nam YD

更新日期：2018-04-24 00:00:00

abstract：:Magnetic resonance imaging (MRI) captures the dynamics of brain development with multiple modalities that quantify both structure and function. These measurements may yield valuable insights into the neural patterns that mark healthy maturation or that identify early risk for psychiatric disorder. The Pediatric Templa...

journal_title：Scientific data

authors： Avants BB,Duda JT,Kilroy E,Krasileva K,Jann K,Kandel BT,Tustison NJ,Yan L,Jog M,Smith R,Wang Y,Dapretto M,Wang DJ

更新日期：2015-02-03 00:00:00

abstract：:Human adenoviruses (HAdVs) are fatal to immuno-suppressed individuals, but no effective anti-HAdV therapy is available. Here, we present a novel image-based high-throughput screening (HTS) platform, which scores the full viral replication cycle from virus entry to dissemination of progeny and second-round infections. ...

journal_title：Scientific data

authors： Georgi F,Kuttler F,Murer L,Andriasyan V,Witte R,Yakimovich A,Turcatti G,Greber UF

更新日期：2020-08-12 00:00:00

abstract：:Metastatic colorectal cancer is a leading cause of cancer death. However, current therapy options are limited to chemotherapy, with the addition of anti-EGFR antibodies for patients with RAS wild-type tumours. Novel drug targets, or drug combinations that induce a synergistic response, would be of great benefit to pat...

journal_title：Scientific data

authors： Williams SP,Barthorpe AS,Lightfoot H,Garnett MJ,McDermott U

更新日期：2017-10-03 00:00:00

abstract：:The use of DNA metabarcoding to characterise the biodiversity of environmental and community samples has exploded in recent years. However, taxonomic inferences from these studies are contingent on the quality and completeness of the sequence reference database used to characterise sample species-composition. In respo...

journal_title：Scientific data

authors： Arranz V,Pearman WS,Aguirre JD,Liggins L

更新日期：2020-07-03 00:00:00

abstract：:We describe a screen for cellular response to drugs that makes use of haploid embryonic stem cells. We generated ten libraries of mutants with piggyBac gene trap transposon integrations, totalling approximately 100,000 mutant clones. Random barcode sequences were inserted into the transposon vector to allow the number...

journal_title：Scientific data

authors： Pettitt SJ,Krastev DB,Pemberton HN,Fontebasso Y,Frankum J,Rehman FL,Brough R,Song F,Bajrami I,Rafiq R,Wallberg F,Kozarewa I,Fenwick K,Armisen-Garrido J,Swain A,Gulati A,Campbell J,Ashworth A,Lord CJ

更新日期：2017-03-01 00:00:00

abstract：:With the help of the bacteria in the rumen, ruminants can effectively convert human inedible plant fiber to edible food (meat and milk). However, the understanding of rumen bacteriome in dairy cows is still limited, especially in a large population under the same diet, breed, and milking period. Here we described the ...

journal_title：Scientific data

authors： Sun HZ,Xue M,Guan LL,Liu J

更新日期：2019-01-22 00:00:00

abstract：:This corrects the article DOI: 10.1038/sdata.2017.37. ...

journal_title：Scientific data

authors： Jungbluth SP,Amend JP,Rappé MS

更新日期：2017-07-04 00:00:00

abstract：:This article presents datasets prepared with the aim of helping the evaluation of geospatial matching methods for vector data. These datasets were built up from mapping data produced by official Spanish mapping agencies. The testbed supplied encompasses the three geometry types: point, line and area. Initial datasets ...

journal_title：Scientific data

authors： Xavier EMA,Ariza-López FJ,Ureña-Cámara MA

更新日期：2017-12-05 00:00:00

abstract：:In this work, we compare the resolution of V2-V3 and V3-V4 16S rRNA regions for the purposes of estimating microbial community diversity using paired-end Illumina MiSeq reads, and show that the fragment, including V2 and V3 regions, has higher resolution for lower-rank taxa (genera and species). It allows for a more p...

journal_title：Scientific data

authors： Bukin YS,Galachyants YP,Morozov IV,Bukin SV,Zakharenko AS,Zemskaya TI

更新日期：2019-02-05 00:00:00

abstract：:Mesenchymal stem/stromal cells (MSCs) were identified in most tissues of an adult organism. MSCs mediate physiological renewal, as well as regulation of tissue homeostasis, reparation and regeneration. Functions of MSCs are regulated by endocrine and neuronal signals, and noradrenaline is one of the most important MSC...

journal_title：Scientific data

authors： Tyurin-Kuzmin PA,Dyikanov DT,Fadeeva JI,Sysoeva VY,Kalinina NI

更新日期：2018-10-02 00:00:00

abstract：:Understanding dynamic human mobility changes and spatial interaction patterns at different geographic scales is crucial for assessing the impacts of non-pharmaceutical interventions (such as stay-at-home orders) during the COVID-19 pandemic. In this data descriptor, we introduce a regularly-updated multiscale dynamic ...

journal_title：Scientific data

authors： Kang Y,Gao S,Liang Y,Li M,Rao J,Kruse J

更新日期：2020-11-12 00:00:00

abstract：:Land-atmosphere interactions at different temporal and spatial scales are important for our understanding of the Earth system and its modeling. The Landscape Evolution Observatory (LEO) at Biosphere 2, managed by the University of Arizona, hosts three nearly identical artificial bare-soil hillslopes with dimensions of...

journal_title：Scientific data

authors： Arevalo J,Zeng X,Durcik M,Sibayan M,Pangle L,Abramson N,Bugaj A,Ng WR,Kim M,Barron-Gafford G,van Haren J,Niu GY,Adams J,Ruiz J,Troch PA

更新日期：2020-09-15 00:00:00

abstract：:Cross sectional imaging is essential for the patient-specific planning and delivery of radiotherapy, a primary determinant of head and neck cancer outcomes. Due to challenges ensuring data quality and patient de-identification, publicly available datasets including diagnostic and radiation treatment planning imaging a...

journal_title：Scientific data

authors： Grossberg AJ,Mohamed ASR,Elhalawani H,Bennett WC,Smith KE,Nolan TS,Williams B,Chamchod S,Heukelom J,Kantor ME,Browne T,Hutcheson KA,Gunn GB,Garden AS,Morrison WH,Frank SJ,Rosenthal DI,Freymann JB,Fuller CD

更新日期：2018-09-04 00:00:00

abstract：:Semiconducting inorganic materials with band gaps ranging between 0 and 5 eV constitute major components in electronic, optoelectronic and photovoltaic devices. Since the band gap is a primary material property that affects the device performance, large band-gap databases are useful in selecting optimal materials in e...

journal_title：Scientific data

authors： Kim S,Lee M,Hong C,Yoon Y,An H,Lee D,Jeong W,Yoo D,Kang Y,Youn Y,Han S

更新日期：2020-11-11 00:00:00

abstract：:Both poly(A) enrichment and ribosomal RNA depletion are commonly used for RNA sequencing. Either has its advantages and disadvantages that may lead to biases in the downstream analyses. To better access these effects, we carried out both ribosomal RNA-depleted and poly(A)-selected RNA-seq for CD4+ T naive cells isolat...

journal_title：Scientific data

authors： Chen L,Yang R,Kwan T,Tang C,Watt S,Zhang Y,Bourque G,Ge B,Downes K,Frontini M,Ouwehand WH,Lin JW,Soranzo N,Pastinen T,Chen L

更新日期：2020-11-09 00:00:00

abstract：:Tardigrades are ubiquitous microscopic animals that play an important role in the study of metazoan phylogeny. Most terrestrial tardigrades can withstand extreme environments by entering an ametabolic desiccated state termed anhydrobiosis. Due to their small size and the non-axenic nature of laboratory cultures, molec...

journal_title：Scientific data

authors： Arakawa K,Yoshida Y,Tomita M

更新日期：2016-08-16 00:00:00

abstract：:When visual input has conflicting interpretations, conscious perception can alternate spontaneously between these possible interpretations. This is called bistable perception. Previous neuroimaging studies have indicated the involvement of two right parietal areas in resolving perceptual ambiguity (ant-SPLr and post-S...

journal_title：Scientific data

authors： Schauer G,Chang A,Schwartzman D,Rae CL,Iriye H,Seth AK,Kanai R

更新日期：2016-08-16 00:00:00

abstract：:Gait analysis has traditionally relied on laborious and lab-based methods. Data from wearable sensors, such as Inertial Measurement Units (IMU), can be analyzed with machine learning to perform gait analysis in real-world environments. This database provides data from thirty participants (fifteen males and fifteen fem...

journal_title：Scientific data

authors： Luo Y,Coppola SM,Dixon PC,Li S,Dennerlein JT,Hu B

更新日期：2020-07-08 00:00:00

abstract：:This corrects the article DOI: 10.1038/sdata.2017.139. ...

journal_title：Scientific data

authors： Williams SP,Barthorpe AS,Lightfoot H,Garnett MJ,McDermott U

更新日期：2018-10-09 00:00:00

abstract：:Rett syndrome is an X-linked neurodevelopmental disorder caused by mutation in the methyl-CpG-binding protein 2 gene (MECP2) in the majority of cases. We describe an RNA sequencing dataset of postmortem brain tissue samples from four females clinically diagnosed with Rett syndrome and four age-matched female donors. T...

journal_title：Scientific data

authors： Aldinger KA,Timms AE,MacDonald JW,McNamara HK,Herstein JS,Bammler TK,Evgrafov OV,Knowles JA,Levitt P

更新日期：2020-06-19 00:00:00

abstract：:Eicosanoids comprise a class of bioactive lipids derived from a unique group of essential fatty acids that mediate a variety of important physiological functions. Owing to the structural diversity of these lipids, their analysis in biological samples is often a major challenge. Advancements in mass spectrometric have ...

journal_title：Scientific data

authors： Sorgi CA,Peti APF,Petta T,Meirelles AFG,Fontanari C,Moraes LAB,Faccioli LH

更新日期：2018-08-21 00:00:00

abstract：:We present the Tesco Grocery 1.0 dataset: a record of 420 M food items purchased by 1.6 M fidelity card owners who shopped at the 411 Tesco stores in Greater London over the course of the entire year of 2015, aggregated at the level of census areas to preserve anonymity. For each area, we report the number of transact...

journal_title：Scientific data

authors： Aiello LM,Quercia D,Schifanella R,Del Prete L

更新日期：2020-02-18 00:00:00

abstract：:Bumblebees (Hymenoptera: Apidae) are important pollinating insects that play pivotal roles in crop production and natural ecosystem services. Although protein-coding genes in bumblebees have been extensively annotated, regulatory sequences of the genome, such as promoters and enhancers, have been poorly annotated. To ...

journal_title：Scientific data

authors： Zhao X,Su L,Xu W,Schaack S,Sun C

更新日期：2020-10-26 00:00:00