Allele-specific expression in a family quartet with autism reveals mono-to-biallelic switch and novel transcriptional processes of autism susceptibility genes.

Abstract:

:Autism spectrum disorder (ASD) is a highly prevalent neurodevelopmental disorder, and the exact causal mechanism is unknown. Dysregulated allele-specific expression (ASE) has been identified in persons with ASD; however, a comprehensive analysis of ASE has not been conducted in a family quartet with ASD. To fill this gap, we analyzed ASE using genomic DNA from parent and offspring and RNA from offspring's postmortem prefrontal cortex (PFC); one of the two offspring had been diagnosed with ASD. DNA- and RNA-sequencing revealed distinct ASE patterns from the PFC of both offspring. However, only the PFC of the offspring with ASD exhibited a mono-to-biallelic switch for LRP2BP and ZNF407. We also identified a novel site of RNA-editing in KMT2C in addition to new monoallelically-expressed genes and miRNAs. Our results demonstrate the prevalence of ASE in human PFC and ASE abnormalities in the PFC of a person with ASD. Taken together, these findings may provide mechanistic insights into the pathogenesis of ASD.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Lin CY,Chang KW,Lin CY,Wu JY,Coon H,Huang PH,Ho HN,Akbarian S,Gau SS,Huang HS

doi

10.1038/s41598-018-22753-4

subject

Has Abstract

pub_date

2018-03-09 00:00:00

pages

4277

issue

1

issn

2045-2322

pii

10.1038/s41598-018-22753-4

journal_volume

8

pub_type

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