The phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts.

Abstract:

:Basic leucine zippers (bZIPs) form a large plant transcription factor family. C and S1 bZIP groups can heterodimerize, fulfilling crucial roles in seed development and stress response. S1 sequences also harbor a unique regulatory mechanism, termed Sucrose-Induced Repression of Translation (SIRT). The conservation of both C/S1 bZIP interactions and SIRT remains poorly characterized in non-model species, leaving their evolutionary origin uncertain and limiting crop research. In this work, we explored recently published plant sequencing data to establish a detailed phylogeny of C and S1 bZIPs, investigating their intertwined role in plant evolution, and the origin of SIRT. Our analyses clarified C and S1 bZIP orthology relationships in angiosperms, and identified S1 sequences in gymnosperms. We experimentally showed that the gymnosperm orthologs are regulated by SIRT, tracing back the origin of this unique regulatory mechanism to the ancestor of seed plants. Additionally, we discovered an earlier S ortholog in the charophyte algae Klebsormidium flaccidum, together with a C ortholog. This suggests that C and S groups originated by duplication from a single algal proto-C/S ancestor. Based on our observations, we propose a model wherein the C/S1 bZIP dimer network evolved in seed plants from pre-existing C/S bZIP interactions.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Peviani A,Lastdrager J,Hanson J,Snel B

doi

10.1038/srep30444

subject

Has Abstract

pub_date

2016-07-26 00:00:00

pages

30444

issn

2045-2322

pii

srep30444

journal_volume

6

pub_type

杂志文章
  • Formalin-fixed paraffin-embedded renal biopsy tissues: an underexploited biospecimen resource for gene expression profiling in IgA nephropathy.

    abstract::Primary IgA nephropathy (IgAN) diagnosis is based on IgA-dominant glomerular deposits and histological scoring is done on formalin-fixed paraffin embedded tissue (FFPE) sections using the Oxford classification. Our aim was to use this underexploited resource to extract RNA and identify genes that characterize active (...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72026-2

    authors: Cox SN,Chiurlia S,Divella C,Rossini M,Serino G,Bonomini M,Sirolli V,Aiello FB,Zaza G,Squarzoni I,Gangemi C,Stangou M,Papagianni A,Haas M,Schena FP

    更新日期:2020-09-16 00:00:00

  • Developmental toxicity of diclofenac and elucidation of gene regulation in zebrafish (Danio rerio).

    abstract::Environmental pollution by emerging contaminants, e.g. pharmaceuticals, has become a matter of widespread concern in recent years. We investigated the membrane transport of diclofenac and its toxic effects on gene expression and the development of zebrafish embryos. The association of diclofenac with the embryos confo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep04841

    authors: Chen JB,Gao HW,Zhang YL,Zhang Y,Zhou XF,Li CQ,Gao HP

    更新日期:2014-05-02 00:00:00

  • Silencing of Glutathione S-Transferase Pi Inhibits Cancer Cell Growth via Oxidative Stress Induced by Mitochondria Dysfunction.

    abstract::Antitumor drug development based on the concept of intervening in the antioxidant system of cancer cells has been gaining increased interest. In this study, we propose a promising strategy for cancer treatment using modulation of oxidative stress by suppression of glutathione S-transferases (GSTs), a typical antioxida...

    journal_title:Scientific reports

    pub_type: 杂志文章,收录出版

    doi:10.1038/s41598-019-51462-9

    authors: Fujitani N,Yoneda A,Takahashi M,Takasawa A,Aoyama T,Miyazaki T

    更新日期:2019-10-14 00:00:00

  • Early endosome motility mediates α-amylase production and cell differentiation in Aspergillus oryzae.

    abstract::Recent research in filamentous fungi has revealed that the motility of an endocytic organelle early endosome (EE) has a versatile role in many physiological functions. Here, to further examine the motility of EEs in the industrially important fungus Aspergillus oryzae, we visualized these organelles via the Rab5 homol...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16163-1

    authors: Togo Y,Higuchi Y,Katakura Y,Takegawa K

    更新日期:2017-11-17 00:00:00

  • Prioritizing conservation actions in urbanizing landscapes.

    abstract::Urbanization-driven landscape changes are harmful to many species. Negative effects can be mitigated through habitat preservation and restoration, but it is often difficult to prioritize these conservation actions. This is due, in part, to the scarcity of species response data, which limit the predictive accuracy of m...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79258-2

    authors: Ettinger AK,Buhle ER,Feist BE,Howe E,Spromberg JA,Scholz NL,Levin PS

    更新日期:2021-01-12 00:00:00

  • Assessment of Chicken Carcass Microbiome Responses During Processing in the Presence of Commercial Antimicrobials Using a Next Generation Sequencing Approach.

    abstract::The purpose of this study was to 1) identify microbial compositional changes on chicken carcasses during processing, 2) determine the antimicrobial efficacy of peracetic acid (PAA) and Amplon (blend of sulfuric acid and sodium sulfate) at a poultry processing pilot plant scale, and 3) compare microbial communities bet...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43354

    authors: Ae Kim S,Hong Park S,In Lee S,Owens CM,Ricke SC

    更新日期:2017-02-23 00:00:00

  • Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM).

    abstract::Globally, there has been an increase in the use of herbal remedies including traditional Chinese medicine (TCM). There is a perception that products are natural, safe and effectively regulated, however, regulatory agencies are hampered by a lack of a toolkit to audit ingredient lists, adulterants and constituent activ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17475

    authors: Coghlan ML,Maker G,Crighton E,Haile J,Murray DC,White NE,Byard RW,Bellgard MI,Mullaney I,Trengove R,Allcock RJ,Nash C,Hoban C,Jarrett K,Edwards R,Musgrave IF,Bunce M

    更新日期:2015-12-10 00:00:00

  • Effective charge separation in the rutile TiO2 nanorod-coupled α-Fe2O3 with exceptionally high visible activities.

    abstract::Herein, we have fabricated rutile TiO2 nanorod-coupled α-Fe2O3 by a wet-chemical process. It is demonstrated that the visible activities for photoelectrochemical water oxidation and for degrading pollutant of α-Fe2O3 are greatly enhanced after coupling a proper amount of rutile nanorods. The enhanced activity is attri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06180

    authors: Luan P,Xie M,Liu D,Fu X,Jing L

    更新日期:2014-08-26 00:00:00

  • Two yellow luminescence bands in undoped GaN.

    abstract::Two yellow luminescence bands related to different defects have been revealed in undoped GaN grown by hydride vapor phase epitaxy (HVPE). One of them, labeled YL1, has the zero-phonon line (ZPL) at 2.57 eV and the band maximum at 2.20 eV at low temperature. This luminescence band is the ubiquitous yellow band observed...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26354-z

    authors: Reshchikov MA,McNamara JD,Helava H,Usikov A,Makarov Y

    更新日期:2018-05-25 00:00:00

  • Genetic and physical mapping of loci for resistance to blackleg disease in canola (Brassica napus L.).

    abstract::Sustainable canola production is essential to meet growing human demands for vegetable oil, biodiesel, and meal for stock feed markets. Blackleg, caused by the fungal pathogen, Leptosphaeria maculans is a devastating disease that can lead to significant yield loss in many canola production regions worldwide. Breakdown...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61211-y

    authors: Raman R,Diffey S,Barbulescu DM,Coombes N,Luckett D,Salisbury P,Cowley R,Marcroft S,Raman H

    更新日期:2020-03-10 00:00:00

  • Distinct clinical features between acute and chronic progressive parenchymal neuro-Behçet disease: meta-analysis.

    abstract::Neuro-Behçet's disease (NBD) is subcategorized into parenchymal-NBD (P-NBD) and non-parenchymal-NBD types. Recently, P-NBD has been further subdivided into acute P-NBD (A-P-NBD) and chronic progressive P-NBD (CP-P-NBD). Although an increasing number of studies have reported the various clinical features of A-P-NBD and...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41598-017-09938-z

    authors: Ishido M,Horita N,Takeuchi M,Shibuya E,Yamane T,Kawagoe T,Ishido T,Minegishi K,Yoshimi R,Kirino Y,Hirohata S,Ishigatsubo Y,Takeno M,Kaneko T,Mizuki N

    更新日期:2017-08-31 00:00:00

  • Changes in land use alter soil quality and aggregate stability in the highlands of northern Ethiopia.

    abstract::Land use change alters biodiversity and soil quality and thus affects ecosystem functions. This study investigated the effects of changes in land use on major soil quality indicators. Soil samples were taken from a depth of 0-10 cm (top soil) under four major land uses (cropland, grassland, area exclosure, eucalyptus ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14128-y

    authors: Delelegn YT,Purahong W,Blazevic A,Yitaferu B,Wubet T,Göransson H,Godbold DL

    更新日期:2017-10-19 00:00:00

  • Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection.

    abstract::Screening and in silico modeling are critical activities for the reduction of experimental costs. They also speed up research notably and strengthen the theoretical framework, thus allowing researchers to numerically quantify the importance of a particular subset of information. For example, in fields such as cancer a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33911-z

    authors: Blanco JL,Porto-Pazos AB,Pazos A,Fernandez-Lozano C

    更新日期:2018-10-24 00:00:00

  • Fasting activates macroautophagy in neurons of Alzheimer's disease mouse model but is insufficient to degrade amyloid-beta.

    abstract::We developed a new technique to observe macroautophagy in the brain in vivo, and examined whether fasting induced macroautophagy in neurons and how the induction was different between Alzheimer's disease (AD) model and control mice. Lentivirus for EGFP-LC3 injected into the brain successfully visualized autophagosome ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12115

    authors: Chen X,Kondo K,Motoki K,Homma H,Okazawa H

    更新日期:2015-07-14 00:00:00

  • Visualization of Surface Acoustic Waves in Thin Liquid Films.

    abstract::We demonstrate that the propagation path of a surface acoustic wave (SAW), excited with an interdigitated transducer (IDT), can be visualized using a thin liquid film dispensed onto a lithium niobate (LiNbO3) substrate. The practical advantages of this visualization method are its rapid and simple implementation, with...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21980

    authors: Rambach RW,Taiber J,Scheck CM,Meyer C,Reboud J,Cooper JM,Franke T

    更新日期:2016-02-26 00:00:00

  • Tracking capsule activation and crack healing in a microcapsule-based self-healing polymer.

    abstract::Structural polymeric materials incorporating a microencapsulated liquid healing agent demonstrate the ability to autonomously heal cracks. Understanding how an advancing crack interacts with the microcapsules is critical to optimizing performance through tailoring the size, distribution and density of these capsules. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54242-7

    authors: McDonald SA,Coban SB,Sottos NR,Withers PJ

    更新日期:2019-11-28 00:00:00

  • AHNAK deficiency promotes browning and lipolysis in mice via increased responsiveness to β-adrenergic signalling.

    abstract::In adipose tissue, agonists of the β3-adrenergic receptor (ADRB3) regulate lipolysis, lipid oxidation, and thermogenesis. The deficiency in the thermogenesis induced by neuroblast differentiation-associated protein AHNAK in white adipose tissue (WAT) of mice fed a high-fat diet suggests that AHNAK may stimulate energy...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23426

    authors: Shin JH,Lee SH,Kim YN,Kim IY,Kim YJ,Kyeong DS,Lim HJ,Cho SY,Choi J,Wi YJ,Choi JH,Yoon YS,Bae YS,Seong JK

    更新日期:2016-03-18 00:00:00

  • Genome-wide analysis of horizontally acquired genes in the genus Mycobacterium.

    abstract::Horizontal gene transfer (HGT) was attributed as a major driving force for the innovation and evolution of prokaryotic genomes. Previously, multiple research endeavors were undertaken to decipher HGT in different bacterial lineages. The genus Mycobacterium houses some of the most deadly human pathogens; however, the i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33261-w

    authors: Panda A,Drancourt M,Tuller T,Pontarotti P

    更新日期:2018-10-04 00:00:00

  • Joint genome-wide association and transcriptome sequencing reveals a complex polygenic network underlying hypocotyl elongation in rapeseed (Brassica napus L.).

    abstract::Hypocotyl elongation is considered an important typical seedling trait contributing directly to an increase in and stabilization of the yield in Brassica napus, but its molecular genetic mechanism is poorly understood. In the present study, hypocotyl lengths of 210 lines were measured in an illuminated culture room. A...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41561

    authors: Luo X,Xue Z,Ma C,Hu K,Zeng Z,Dou S,Tu J,Shen J,Yi B,Fu T

    更新日期:2017-01-31 00:00:00

  • SmMYC2a and SmMYC2b played similar but irreplaceable roles in regulating the biosynthesis of tanshinones and phenolic acids in Salvia miltiorrhiza.

    abstract::Salvia miltiorrhiza Bunge, which contains tanshinones and phenolic acids as major classes of bioactive components, is one of the most widely used herbs in traditional Chinese medicine. Production of tanshinones and phenolic acids is enhanced by methyl jasmonate (MeJA). Transcription factor MYC2 is the switch of jasmon...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22852

    authors: Zhou Y,Sun W,Chen J,Tan H,Xiao Y,Li Q,Ji Q,Gao S,Chen L,Chen S,Zhang L,Chen W

    更新日期:2016-03-07 00:00:00

  • Phosphodiesterase type 5 inhibitors for the treatment of post-nerve sparing radical prostatectomy erectile dysfunction in men.

    abstract::Prostate cancer (PCa) is the most common solid neoplasm diagnosed in developed countries. Nerve-sparing radical prostatectomy (NS-RP) has been widely accepted as the best choice treatment for localised PCa. However, erectile dysfunction (ED) and urinary incontinence are commonly observed after NS-RP. Using meta-analys...

    journal_title:Scientific reports

    pub_type: 杂志文章,评审

    doi:10.1038/srep05801

    authors: Li J,Shi Q,Pu C,Tang Y,Bai Y,Yuan H,Li X,Dong Q,Wei Q,Yuan J,Han P

    更新日期:2014-07-23 00:00:00

  • Amide-controlled, one-pot synthesis of tri-substituted purines generates structural diversity and analogues with trypanocidal activity.

    abstract::A novel one-pot synthesis of tri-substituted purines and the discovery of purine analogues with trypanocidal activity are reported. The reaction is initiated by a metal-free oxidative coupling of primary alkoxides and diaminopyrimidines with Schiff base formation and subsequent annulation in the presence of large N,N-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09139

    authors: Pineda de las Infantas y Villatoro MJ,Unciti-Broceta JD,Contreras-Montoya R,Garcia-Salcedo JA,Gallo Mezo MA,Unciti-Broceta A,Diaz-Mochon JJ

    更新日期:2015-03-16 00:00:00

  • Messenger RNA delivery of a cartilage-anabolic transcription factor as a disease-modifying strategy for osteoarthritis treatment.

    abstract::Osteoarthritis (OA) is a chronic degenerative joint disease and a major health problem in the elderly population. No disease-modifying osteoarthritis drug (DMOAD) has been made available for clinical use. Here we present a disease-modifying strategy for OA, focusing on messenger RNA (mRNA) delivery of a therapeutic tr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18743

    authors: Aini H,Itaka K,Fujisawa A,Uchida H,Uchida S,Fukushima S,Kataoka K,Saito T,Chung UI,Ohba S

    更新日期:2016-01-05 00:00:00

  • Tuneable Magnetic Phase Transitions in Layered CeMn2Ge(2-x)Six Compounds.

    abstract::The structural and magnetic properties of seven CeMn2Ge(2-x)Six compounds with x = 0.0-2.0 have been investigated in detail. Substitution of Ge with Si leads to a monotonic decrease of both a and c along with concomitant contraction of the unit cell volume and significant modifications of the magnetic states - a cross...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11288

    authors: Md Din MF,Wang JL,Cheng ZX,Dou SX,Kennedy SJ,Avdeev M,Campbell SJ

    更新日期:2015-06-19 00:00:00

  • Simvastatin and Bezafibrate ameliorate Emotional disorder Induced by High fat diet in C57BL/6 mice.

    abstract::High fat diet (HFD)-induced metabolic disorders may lead to emotional disorders. This study aimed to explore the effect of simvastatin (SMV) and bezafibrate (BZ) on improving HFD-induced emotional changes, and tried to identify their different mechanisms. The intraperitoneal glucose tolerance test (IPGTT) was used to ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02576-5

    authors: Wang H,Zhou J,Liu QZ,Wang LL,Shang J

    更新日期:2017-05-24 00:00:00

  • Artemether ameliorates kidney injury by restoring redox imbalance and improving mitochondrial function in Adriamycin nephropathy in mice.

    abstract::The kidney is a high-energy demand organ rich in mitochondria especially renal tubular cells. Emerging evidence suggests that mitochondrial dysfunction, redox imbalance and kidney injury are interconnected. Artemether has biological effects by targeting mitochondria and exhibits potential therapeutic value for kidney ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80298-x

    authors: Han P,Cai Y,Wang Y,Weng W,Chen Y,Wang M,Zhan H,Yu X,Wang T,Shao M,Sun H

    更新日期:2021-01-14 00:00:00

  • A continuous evolution system for contracting the host range of bacteriophage T7.

    abstract::Bacteriophage T7 is an intracellular parasite that recognizes its host via its tail and tail fiber proteins, known as receptor-binding proteins (RBPs). The RBPs attach to specific lipopolysaccharide (LPS) features on the host. Various studies have shown expansion of the phage's host range via mutations in the genes en...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-57221-0

    authors: Holtzman T,Globus R,Molshanski-Mor S,Ben-Shem A,Yosef I,Qimron U

    更新日期:2020-01-15 00:00:00

  • Heterogeneous length of stay of hosts' movements and spatial epidemic spread.

    abstract::Infectious diseases outbreaks are often characterized by a spatial component induced by hosts' distribution, mobility, and interactions. Spatial models that incorporate hosts' movements are being used to describe these processes, to investigate the conditions for propagation, and to predict the spatial spread. Several...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep00476

    authors: Poletto C,Tizzoni M,Colizza V

    更新日期:2012-01-01 00:00:00

  • The association between polyomavirus BK strains and BKV viruria in liver transplant recipients.

    abstract::BK virus (BKV) is a polyomavirus that cause of allograft dysfunction among kidney transplant recipients. The role of BKV infection in non-renal solid organ transplant recipients is not well understood neither for the relationship between various BKV strains with occurrence of BKV viral viruria. This study aimed to und...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28491

    authors: Wang RY,Li YJ,Lee WC,Wu HH,Lin CY,Lee CC,Chen YC,Hung CC,Yang CW,Tian YC

    更新日期:2016-06-24 00:00:00

  • Spider foraging strategy affects trophic cascades under natural and drought conditions.

    abstract::Spiders can cause trophic cascades affecting litter decomposition rates. However, it remains unclear how spiders with different foraging strategies influence faunal communities, or present cascading effects on decomposition. Furthermore, increased dry periods predicted in future climates will likely have important con...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12396

    authors: Liu S,Chen J,Gan W,Schaefer D,Gan J,Yang X

    更新日期:2015-07-23 00:00:00