Epigenetic inactivation of the CpG demethylase TET1 as a DNA methylation feedback loop in human cancers.

Abstract:

:Promoter CpG methylation is a fundamental regulatory process of gene expression. TET proteins are active CpG demethylases converting 5-methylcytosine to 5-hydroxymethylcytosine, with loss of 5 hmC as an epigenetic hallmark of cancers, indicating critical roles of TET proteins in epigenetic tumorigenesis. Through analysis of tumor methylomes, we discovered TET1 as a methylated target, and further confirmed its frequent downregulation/methylation in cell lines and primary tumors of multiple carcinomas and lymphomas, including nasopharyngeal, esophageal, gastric, colorectal, renal, breast and cervical carcinomas, as well as non-Hodgkin, Hodgkin and nasal natural killer/T-cell lymphomas, although all three TET family genes are ubiquitously expressed in normal tissues. Ectopic expression of TET1 catalytic domain suppressed colony formation and induced apoptosis of tumor cells of multiple tissue types, supporting its role as a broad bona fide tumor suppressor. Furthermore, TET1 catalytic domain possessed demethylase activity in cancer cells, being able to inhibit the CpG methylation of tumor suppressor gene (TSG) promoters and reactivate their expression, such as SLIT2, ZNF382 and HOXA9. As only infrequent mutations of TET1 have been reported, compared to TET2, epigenetic silencing therefore appears to be the dominant mechanism for TET1 inactivation in cancers, which also forms a feedback loop of CpG methylation during tumorigenesis.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Li L,Li C,Mao H,Du Z,Chan WY,Murray P,Luo B,Chan AT,Mok TS,Chan FK,Ambinder RF,Tao Q

doi

10.1038/srep26591

subject

Has Abstract

pub_date

2016-05-26 00:00:00

pages

26591

issn

2045-2322

pii

srep26591

journal_volume

6

pub_type

杂志文章
  • Passive acoustic listening stations (PALS) show rapid onset of ecological effects of harmful algal blooms in real time.

    abstract::Monitoring ecological changes in marine ecosystems is expensive and time-consuming. Passive acoustic methods provide continuous monitoring of soniferous species, are relatively inexpensive, and can be integrated into a larger network to provide enhanced spatial and temporal coverage of ecological events. We demonstrat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74647-z

    authors: Rycyk AM,Tyson Moore RB,Wells RS,McHugh KA,Berens McCabe EJ,Mann DA

    更新日期:2020-10-20 00:00:00

  • Mitochondrial genomes of the key zooplankton copepods Arctic Calanus glacialis and North Atlantic Calanus finmarchicus with the longest crustacean non-coding regions.

    abstract::We determined the nearly complete mitochondrial genomes of the Arctic Calanus glacialis and its North Atlantic sibling Calanus finmarchicus, which are key zooplankton components in marine ecosystems. The sequenced part of C. glacialis mitogenome is 27,342 bp long and consists of two contigs, while for C. finmarchicus ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13807-0

    authors: Weydmann A,Przyłucka A,Lubośny M,Walczyńska KS,Serrão EA,Pearson GA,Burzyński A

    更新日期:2017-10-20 00:00:00

  • Altered fluvial patterns in North China indicate rapid climate change linked to the Permian-Triassic mass extinction.

    abstract::The causes of the severest crisis in the history of life around the Permian-Triassic boundary (PTB) remain controversial. Here we report that the latest Permian alluvial plains in Shanxi, North China, went through a rapid transition from meandering rivers to braided rivers and aeolian systems. Soil carbonate carbon is...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53321-z

    authors: Zhu Z,Liu Y,Kuang H,Benton MJ,Newell AJ,Xu H,An W,Ji S,Xu S,Peng N,Zhai Q

    更新日期:2019-11-14 00:00:00

  • Evaluation of the safety profile of rotavirus vaccines: a pharmacovigilance analysis on American and European data.

    abstract::Rotaviruses (RVs) are the most common cause of severe diarrheal disease. To date two rotavirus oral vaccines are licensed: Rotarix and Rotateq. Our aim was to contribute to the post-marketing evaluation of these vaccines safety profile. We collected all RV vaccines-related reports of Adverse Events Following Immunizat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70653-3

    authors: Bonaldo G,Noseda R,Ceschi A,Vaccheri A,Motola D

    更新日期:2020-08-12 00:00:00

  • Parasite infection accelerates age polyethism in young honey bees.

    abstract::Honey bees (Apis mellifera) are important pollinators and their health is threatened worldwide by persistent exposure to a wide range of factors including pesticides, poor nutrition, and pathogens. Nosema ceranae is a ubiquitous microsporidian associated with high colony mortality. We used lab micro-colonies of honey ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22042

    authors: Lecocq A,Jensen AB,Kryger P,Nieh JC

    更新日期:2016-02-25 00:00:00

  • Subthalamic Neurons Encode Both Single- and Multi-Limb Movements in Parkinson's Disease Patients.

    abstract::The subthalamic nucleus (STN) is the main target for neurosurgical treatment of motor signs of Parkinson's disease (PD). Despite the therapeutic effect on both upper and lower extremities, its role in motor control and coordination and its changes in Parkinson's disease are not fully clear. We intraoperatively recorde...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42467

    authors: Tankus A,Strauss I,Gurevich T,Mirelman A,Giladi N,Fried I,Hausdorff JM

    更新日期:2017-02-13 00:00:00

  • 2D and 3D convolutional neural networks for outcome modelling of locally advanced head and neck squamous cell carcinoma.

    abstract::For treatment individualisation of patients with locally advanced head and neck squamous cell carcinoma (HNSCC) treated with primary radiochemotherapy, we explored the capabilities of different deep learning approaches for predicting loco-regional tumour control (LRC) from treatment-planning computed tomography images...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70542-9

    authors: Starke S,Leger S,Zwanenburg A,Leger K,Lohaus F,Linge A,Schreiber A,Kalinauskaite G,Tinhofer I,Guberina N,Guberina M,Balermpas P,von der Grün J,Ganswindt U,Belka C,Peeken JC,Combs SE,Boeke S,Zips D,Richter C,Troost

    更新日期:2020-09-24 00:00:00

  • How gluttonous cell aggregates clear substrates coated with microparticles.

    abstract::We study the spreading of cell aggregates deposited on adhesive substrates decorated with microparticles (MPs). A cell monolayer expands around the aggregate. The cells on the periphery of the monolayer take up the MPs, clearing the substrate as they progress and forming an aureole of cells filled with MPs. We study t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15665-2

    authors: Beaune G,Lam AYW,Dufour S,Winnik FM,Brochard-Wyart F

    更新日期:2017-11-16 00:00:00

  • Biomechanical properties of predator-induced body armour in the freshwater crustacean Daphnia.

    abstract::The freshwater crustacean Daphnia is known for its ability to develop inducible morphological defences that thwart predators. These defences are developed only in the presence of predators and are realized as morphological shape alterations e.g. 'neckteeth' in D. pulex and 'crests' in D. longicephala. Both are discuss...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09649-5

    authors: Kruppert S,Horstmann M,Weiss LC,Witzel U,Schaber CF,Gorb SN,Tollrian R

    更新日期:2017-08-29 00:00:00

  • Lateral Antimicrobial Resistance Genetic Transfer is active in the open environment.

    abstract::Historically, the environment has been viewed as a passive deposit of antimicrobial resistance mechanisms, where bacteria show biological cost for maintenance of these genes. Thus, in the absence of antimicrobial pressure, it is expected that they disappear from environmental bacterial communities. To test this scenar...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00600-2

    authors: Chamosa LS,Álvarez VE,Nardelli M,Quiroga MP,Cassini MH,Centrón D

    更新日期:2017-03-31 00:00:00

  • Huntington's disease blood and brain show a common gene expression pattern and share an immune signature with Alzheimer's disease.

    abstract::There is widespread transcriptional dysregulation in Huntington's disease (HD) brain, but analysis is inevitably limited by advanced disease and postmortem changes. However, mutant HTT is ubiquitously expressed and acts systemically, meaning blood, which is readily available and contains cells that are dysfunctional i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44849

    authors: Hensman Moss DJ,Flower MD,Lo KK,Miller JR,van Ommen GB,'t Hoen PA,Stone TC,Guinee A,Langbehn DR,Jones L,Plagnol V,van Roon-Mom WM,Holmans P,Tabrizi SJ

    更新日期:2017-03-21 00:00:00

  • Detection and measure of genuine tripartite entanglement with partial transposition and realignment of density matrices.

    abstract::It is challenging task to detect and measure genuine multipartite entanglement. We investigate the problem by considering the average based positive partial transposition(PPT) criterion and the realignment criterion. Sufficient conditions for detecting genuine tripartite entanglement are presented. We also derive lowe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17585-7

    authors: Li M,Wang J,Shen S,Chen Z,Fei SM

    更新日期:2017-12-08 00:00:00

  • Leakage of astrocyte-derived extracellular vesicles in stress-induced exhaustion disorder: a cross-sectional study.

    abstract::Patients with stress-induced exhaustion disorder (SED) demonstrate cognitive dysfunction similar to patients with minor traumatic brain injury (TBI). We have previously detected elevated concentrations of astrocyte-derived extracellular vesicles (EVs) in patients with TBI. As such, we hypothesized that astrocyte-deriv...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-81453-8

    authors: Wallensten J,Nager A,Åsberg M,Borg K,Beser A,Wilczek A,Mobarrez F

    更新日期:2021-01-21 00:00:00

  • Early prediction of live birth for assisted reproductive technology patients: a convenient and practical prediction model.

    abstract::Live birth is the most important concern for assisted reproductive technology (ART) patients. Therefore, in the medical reproductive centre, obstetricians often need to answer the following question: "What are the chances that I will have a healthy baby after ART treatment?" To date, our obstetricians have no referenc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79308-9

    authors: Gao H,Liu DE,Li Y,Wu X,Tan H

    更新日期:2021-01-11 00:00:00

  • Long-term exposure of human endothelial cells to metformin modulates miRNAs and isomiRs.

    abstract::Increasing evidence suggest that the glucose-lowering drug metformin exerts a valuable anti-senescence role. The ability of metformin to affect the biogenesis of selected microRNAs (miRNAs) was recently suggested. MicroRNA isoforms (isomiRs) are distinct variations of miRNA sequences, harboring addition or deletion of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78871-5

    authors: Giuliani A,Londin E,Ferracin M,Mensà E,Prattichizzo F,Ramini D,Marcheselli F,Recchioni R,Rippo MR,Bonafè M,Rigoutsos I,Olivieri F,Sabbatinelli J

    更新日期:2020-12-11 00:00:00

  • Lufenuron induces reproductive toxicity and genotoxic effects in pregnant albino rats and their fetuses.

    abstract::Insecticides and other agrochemicals have become indispensable components of the agricultural system to ensure a notable increase in crop yield and food production. As a natural consequence, chemical residues result in significantly increased contamination of both terrestrial and aquatic ecosystems. The present study ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76638-6

    authors: Basal WT,Ahmed ART,Mahmoud AA,Omar AR

    更新日期:2020-11-11 00:00:00

  • Virtual Recovery of Content from X-Ray Micro-Tomography Scans of Damaged Historic Scrolls.

    abstract::There is a large body of historical documents that are too fragile to be opened or unrolled, making their contents inaccessible. Recent improvements in X-ray scanning technology and computer vision techniques make it possible to perform a "virtual" unrolling of such documents. We describe a novel technique to process ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29037-x

    authors: Rosin PL,Lai YK,Liu C,Davis GR,Mills D,Tuson G,Russell Y

    更新日期:2018-08-09 00:00:00

  • HIDEEP: a systems approach to predict hormone impacts on drug efficacy based on effect paths.

    abstract::Experimental evidence has shown that some of the human endogenous hormones significantly affect drug efficacy. Since hormone status varies with individual physiological states, it is essential to understand the interplay of hormones and drugs for precision medicine. Here, we developed an in silico method to predict in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16855-8

    authors: Kwon M,Jung J,Yu H,Lee D

    更新日期:2017-11-30 00:00:00

  • Simulating thoughts to measure and study internal attention in mental health.

    abstract::Our mind's eye and the role of internal attention in mental life and suffering has intrigued scholars for centuries. Yet, experimental study of internal attention has been elusive due to our limited capacity to control the timing and content of internal stimuli. We thus developed the Simulated Thoughts Paradigm (STP) ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-81756-w

    authors: Amir I,Ruimi L,Bernstein A

    更新日期:2021-01-26 00:00:00

  • Structural and mechanistic divergence of the small (p)ppGpp synthetases RelP and RelQ.

    abstract::The nutritional alarmones ppGpp and pppGpp (collectively: (p)ppGpp) are nucleotide-based second messengers enabling bacteria to respond to environmental and stress conditions. Several bacterial species contain two highly homologous (p)ppGpp synthetases named RelP (SAS2, YwaC) and RelQ (SAS1, YjbM). It is established t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-20634-4

    authors: Steinchen W,Vogt MS,Altegoer F,Giammarinaro PI,Horvatek P,Wolz C,Bange G

    更新日期:2018-02-01 00:00:00

  • Author Correction: Pattern invariance for reaction-diffusion systems on complex networks.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-60111-5

    authors: Cencetti G,Clusella P,Fanelli D

    更新日期:2020-02-18 00:00:00

  • IRGM1 enhances B16 melanoma cell metastasis through PI3K-Rac1 mediated epithelial mesenchymal transition.

    abstract::Melanoma is one of the most aggressive skin cancers and is well known for its high metastatic rate. Studies have shown that epithelial mesenchymal transition (EMT) is essential for melanoma cell metastasis. However, the molecular mechanisms underlying EMT are still not fully understood. We have shown that IRGM1, a mem...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12357

    authors: Tian L,Li L,Xing W,Li R,Pei C,Dong X,Fu Y,Gu C,Guo X,Jia Y,Wang G,Wang J,Li B,Ren H,Xu H

    更新日期:2015-07-23 00:00:00

  • Molecular sexing in Japanese murrelet (Synthliboramphus wumizusume) and a tandem-repeat polymorphism on the W chromosome.

    abstract::The Japanese murrelet (Synthliboramphus wumizusume) is an endangered small seabird species in Japan. Molecular sexing using PCR targeting of the gene encoding chromodomain helicase DNA-binding protein 1(CHD1) has been used for sex identification. Specifically, PCR using any of three commonly used primer sets (CHD1F/1R...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65206-7

    authors: Hatakeyama H,Nakamura Y,Konaka T,Nishida S,Kriangwanich W,Uematsu K,Tsuchida S

    更新日期:2020-05-22 00:00:00

  • Human Platelet Lysate versus Fetal Calf Serum: These Supplements Do Not Select for Different Mesenchymal Stromal Cells.

    abstract::Culture medium of mesenchymal stromal cells (MSCs) is usually supplemented with either human platelet lysate (HPL) or fetal calf serum (FCS). Many studies have demonstrated that proliferation and cellular morphology are affected by these supplements - it is therefore important to determine if they favor outgrowth of d...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05207-1

    authors: Fernandez-Rebollo E,Mentrup B,Ebert R,Franzen J,Abagnale G,Sieben T,Ostrowska A,Hoffmann P,Roux PF,Rath B,Goodhardt M,Lemaitre JM,Bischof O,Jakob F,Wagner W

    更新日期:2017-07-11 00:00:00

  • Cell cycle genes are downregulated after adipogenic triggering in human adipose tissue-derived stem cells by regulation of mRNA abundance.

    abstract::The adipogenic process is characterized by the expression of adipocyte differentiation markers that lead to changes in cell metabolism and to the accumulation of lipid droplets. Moreover, during early adipogenesis, cells undergo a strong downregulation of translational activity with a decrease in cell size, proliferat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42005-3

    authors: Marcon BH,Shigunov P,Spangenberg L,Pereira IT,de Aguiar AM,Amorín R,Rebelatto CK,Correa A,Dallagiovanna B

    更新日期:2019-04-04 00:00:00

  • Chronic exposure to low doses of estradiol-17ß increases blood pressure in young female rats: A possible role for central Endothelin-1.

    abstract::Previously, we demonstrated that chronic exposure to low levels of estradiol-17β (E2) increases mean arterial pressure (MAP) in young female Sprague-Dawley (SD) rats, however, the underlying mechanisms are unclear. Since endothelin-1 (ET-1) is implicated in blood pressure (BP) regulation, we hypothesized that E2's eff...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00213-9

    authors: Subramanian M,MohanKumar SM,Balasubramanian P,Northcott CA,Garver H,Fink GD,MohanKumar PS

    更新日期:2017-03-10 00:00:00

  • Full annual monitoring of Subantarctic Emiliania huxleyi populations reveals highly calcified morphotypes in high-CO2 winter conditions.

    abstract::Ocean acidification is expected to have detrimental consequences for the most abundant calcifying phytoplankton species Emiliania huxleyi. However, this assumption is mainly based on laboratory manipulations that are unable to reproduce the complexity of natural ecosystems. Here, E. huxleyi coccolith assemblages colle...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-59375-8

    authors: Rigual-Hernández AS,Trull TW,Flores JA,Nodder SD,Eriksen R,Davies DM,Hallegraeff GM,Sierro FJ,Patil SM,Cortina A,Ballegeer AM,Northcote LC,Abrantes F,Rufino MM

    更新日期:2020-02-13 00:00:00

  • Self-similarity of human protein interaction networks: a novel strategy of distinguishing proteins.

    abstract::The successful determination of reliable protein interaction networks (PINs) in several species in the post-genomic era has hitherto facilitated the quest to understanding systems and structural properties of such networks. It is envisaged that a clearer understanding of their intrinsic topological properties would el...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07628

    authors: Fadhal E,Gamieldien J,Mwambene EC

    更新日期:2015-02-27 00:00:00

  • Rho-kinase inhibitor Y-27632 and hypoxia synergistically enhance chondrocytic phenotype and modify S100 protein profiles in human chondrosarcoma cells.

    abstract::Articular chondrocytes are slowly dividing cells that tend to lose their cell type-specific phenotype and ability to produce structurally and functionally correct cartilage tissue when cultured. Thus, culture conditions, which enhance the maintenance of chondrocyte phenotype would be very useful for cartilage research...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-03958-5

    authors: Piltti J,Bygdell J,Fernández-Echevarría C,Marcellino D,Lammi MJ

    更新日期:2017-06-16 00:00:00

  • Injection of Fluoro-Gold into the tibial nerve leads to prolonged but reversible functional deficits in rats.

    abstract::Tract tracing with neuronal tracers not only represents a straightforward approach to identify axonal projection connection between regions of the nervous system at distance but also provides compelling evidence for axonal regeneration. An ideal neuronal tracer meets certain criteria including high labeling efficacy, ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46285-7

    authors: Mi D,Yuan Y,Zhang Y,Niu J,Wang Y,Yan J,Yang Y,Hu W

    更新日期:2019-07-09 00:00:00