Bacterial and archaeal communities in the deep-sea sediments of inactive hydrothermal vents in the Southwest India Ridge.

Abstract:

:Active deep-sea hydrothermal vents harbor abundant thermophilic and hyperthermophilic microorganisms. However, microbial communities in inactive hydrothermal vents have not been well documented. Here, we investigated bacterial and archaeal communities in the two deep-sea sediments (named as TVG4 and TVG11) collected from inactive hydrothermal vents in the Southwest India Ridge using the high-throughput sequencing technology of Illumina MiSeq2500 platform. Based on the V4 region of 16S rRNA gene, sequence analysis showed that bacterial communities in the two samples were dominated by Proteobacteria, followed by Bacteroidetes, Actinobacteria and Firmicutes. Furthermore, archaeal communities in the two samples were dominated by Thaumarchaeota and Euryarchaeota. Comparative analysis showed that (i) TVG4 displayed the higher bacterial richness and lower archaeal richness than TVG11; (ii) the two samples had more divergence in archaeal communities than bacterial communities. Bacteria and archaea that are potentially associated with nitrogen, sulfur metal and methane cycling were detected in the two samples. Overall, we first provided a comparative picture of bacterial and archaeal communities and revealed their potentially ecological roles in the deep-sea environments of inactive hydrothermal vents in the Southwest Indian Ridge, augmenting microbial communities in inactive hydrothermal vents.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Zhang L,Kang M,Xu J,Xu J,Shuai Y,Zhou X,Yang Z,Ma K

doi

10.1038/srep25982

subject

Has Abstract

pub_date

2016-05-12 00:00:00

pages

25982

issn

2045-2322

pii

srep25982

journal_volume

6

pub_type

杂志文章
  • Lighting up ultraviolet fluorescence from chicken albumen through plasmon resonance energy transfer of gold nanoparticles.

    abstract::Au nanoparticles (AuNPs), which easily aggregate in organic thin film, are observed to well-disperse in chicken albumen thin films. The incorporated AuNPs is distributed uniformly inside the thin film and is as dense as 650 (particles/μm(3)). In addition, enhanced ultraviolet (UV) fluorescence centered at 350 nm is ob...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01505

    authors: Tsung Chen I,Chang PH,Chang YC,Guo TF

    更新日期:2013-01-01 00:00:00

  • Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks.

    abstract::Classification of histologic patterns in lung adenocarcinoma is critical for determining tumor grade and treatment for patients. However, this task is often challenging due to the heterogeneous nature of lung adenocarcinoma and the subjective criteria for evaluation. In this study, we propose a deep learning model tha...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-40041-7

    authors: Wei JW,Tafe LJ,Linnik YA,Vaickus LJ,Tomita N,Hassanpour S

    更新日期:2019-03-04 00:00:00

  • Green Brönsted acid ionic liquids as novel corrosion inhibitors for carbon steel in acidic medium.

    abstract::New ionic liquids with multiple Brönsted acid sites were synthesized in ≥98% yield, and their inhibiting properties for the corrosion of carbon steel in 0.5 M HCl solution had been evaluated using electrochemical impedance spectroscopy, potentiodynamic polarization and weight loss method, finally the possible inhibiti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07925-y

    authors: Cao S,Liu D,Zhang P,Yang L,Yang P,Lu H,Gui J

    更新日期:2017-08-18 00:00:00

  • Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering.

    abstract::Perivascular spaces (PVSs) in brain have a close relationship with typical neurological diseases. The quantitative studies of PVSs are meaningful but usually difficult, due to their thin and weak signals and also background noise in the 7 T brain magnetic resonance images (MRI). To clearly distinguish the PVSs in the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09336-5

    authors: Hou Y,Park SH,Wang Q,Zhang J,Zong X,Lin W,Shen D

    更新日期:2017-08-17 00:00:00

  • Chemical Partition of the Radiative Decay Rate of Luminescence of Europium Complexes.

    abstract::The spontaneous emission coefficient, Arad, a global molecular property, is one of the most important quantities related to the luminescence of complexes of lanthanide ions. In this work, by suitable algebraic transformations of the matrices involved, we introduce a partition that allows us to compute, for the first t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21204

    authors: Lima NB,Dutra JD,Gonçalves SM,Freire RO,Simas AM

    更新日期:2016-02-19 00:00:00

  • Effects of combining constraint-induced movement therapy and action-observation training on upper limb kinematics in children with unilateral cerebral palsy: a randomized controlled trial.

    abstract::Modified constraint-induced movement therapy (mCIMT) improves upper limb (UL) motor execution in unilateral cerebral palsy (uCP). As these children also show motor planning deficits, action-observation training (AOT) might be of additional value. Here, we investigated the combined value of AOT to mCIMT on UL kinematic...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-020-67427-2

    authors: Simon-Martinez C,Mailleux L,Jaspers E,Ortibus E,Desloovere K,Klingels K,Feys H

    更新日期:2020-06-26 00:00:00

  • Exploring the familial role of social responsiveness differences between savant and non-savant children with autism.

    abstract::Savant syndrome is a phenomenon whereby individuals with cognitive impairments have one or more outstanding abilities, inconsistent with their general intellectual functioning. Approximately 50% of savant individuals have autism spectrum disorder (ASD), and 10-30% of people with ASD have savant skills. To shed additio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-59209-7

    authors: Daniel E,Menashe I

    更新日期:2020-02-10 00:00:00

  • Evaluation of screening platforms for virus-like particle production with the baculovirus expression vector system in insect cells.

    abstract::Recombinant protein and virus-like particle (VLP) production based on the baculovirus expression vector system is fast, flexible, and offers high yields. Independent from the product, a multitude of parameters are screened during process development/optimisation. Early development acceleration is a key requirement for...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57761-w

    authors: Strobl F,Ghorbanpour SM,Palmberger D,Striedner G

    更新日期:2020-01-23 00:00:00

  • Corrigendum: Lysine Acetylation and Succinylation in HeLa Cells and their Essential Roles in Response to UV-induced Stress.

    abstract::This corrects the article DOI: 10.1038/srep30212. ...

    journal_title:Scientific reports

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/srep46831

    authors: Xu H,Chen X,Xu X,Shi R,Suo S,Cheng K,Zheng Z,Wang M,Wang L,Zhao Y,Tian B,Hua Y

    更新日期:2017-05-26 00:00:00

  • Structural Characterization of H1N1 Nucleoprotein-Nucleozin Binding Sites.

    abstract::Influenza viruses are among the most common pathogens that threaten the health of humans and animals worldwide. Various anti-viral therapeutic agents are currently used for treatment and prophylaxis of influenza virus, but the targets of these drugs are easily mutated and result in resistance. Therefore, medications t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29684

    authors: Pang B,Cheung NN,Zhang W,Dai J,Kao RY,Zhang H,Hao Q

    更新日期:2016-07-11 00:00:00

  • "Betting on nature" or "betting on others": anti-coordination induces uniquely high levels of entropy.

    abstract::Uncertainty in the form of risk or ambiguity can arise from the interaction with nature and other players, while strategic uncertainty arises only in interactions with others. Here, we systematically compare binary decisions between a safe option and a potentially higher paying but uncertain option in four experimenta...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21962-1

    authors: Chierchia G,Nagel R,Coricelli G

    更新日期:2018-02-23 00:00:00

  • Optical detection of radon decay in air.

    abstract::An optical radon detection method is presented. Radon decay is directly measured by observing the secondary radiolumines cence light that alpha particles excite in air, and the selectivity of coincident photon detection is further enhanced with online pulse-shape analysis. The sensitivity of a demonstration device was...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21532

    authors: Sand J,Ihantola S,Peräjärvi K,Toivonen H,Toivonen J

    更新日期:2016-02-12 00:00:00

  • Extraction of nano-silicon with activated carbons simultaneously from rice husk and their synergistic catalytic effect in counter electrodes of dye-sensitized solar cells.

    abstract::The extraction of renewable energy resources particularly from earth abundant materials has always been a matter of significance in industrial products. Herein, we report a novel simultaneous extraction of nano-silicon with activated carbons (nano-Si@ACs) from rice husk (RH) by chemical activation method. As-extracted...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39314

    authors: Ahmad W,Bahrani MR,Yang Z,Khan J,Jing W,Jiang F,Chu L,Liu N,Li L,Gao Y

    更新日期:2016-12-21 00:00:00

  • Synthesis and Characterization of PtTe2 Multi-Crystallite Nanoparticles using Organotellurium Nanocomposites.

    abstract::Herein, we report the synthesis of new PtTe2 multi-crystallite nanoparticles (NPs) in different sizes through an annealing process using new nanostructured Pt-Te organometallic NPs as a single source precursor. This precursor was obtained in a single reaction step using Ph2Te2 and H2PtCl6 and could be successfully siz...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10239-8

    authors: Fernández-Lodeiro J,Rodríguez-Gónzalez B,Novio F,Fernández-Lodeiro A,Ruiz-Molina D,Capelo JL,Santos AAD,Lodeiro C

    更新日期:2017-08-29 00:00:00

  • A rational experimental approach to identify correctly the working voltage window of aqueous-based supercapacitors.

    abstract::It is common to find in the literature different values for the working voltage window (WVW) range for aqueous-based supercapacitors. In many cases, even with the best intentions of the widening the operating voltage window, the measured current using the cyclic voltammetry (CV) technique includes a significant contri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75851-7

    authors: Nunes WG,Freitas BGA,Beraldo RM,Filho RM,Da Silva LM,Zanin H

    更新日期:2020-11-05 00:00:00

  • A physiological role of cyclic electron transport around photosystem I in sustaining photosynthesis under fluctuating light in rice.

    abstract::Plants experience a highly variable light environment over the course of the day. To reveal the molecular mechanisms of their photosynthetic response to fluctuating light, we examined the role of two cyclic electron flows around photosystem I (CEF-PSI)--one depending on PROTON GRADIENT REGULATION 5 (PGR5) and one on N...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20147

    authors: Yamori W,Makino A,Shikanai T

    更新日期:2016-02-02 00:00:00

  • Growth rate control of flagellar assembly in Escherichia coli strain RP437.

    abstract::The flagellum is a rotary motor that enables bacteria to swim in liquids and swarm over surfaces. Numerous global regulators control flagellar assembly in response to cellular and environmental factors. Previous studies have also shown that flagellar assembly is affected by the growth-rate of the cell. However, a syst...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41189

    authors: Sim M,Koirala S,Picton D,Strahl H,Hoskisson PA,Rao CV,Gillespie CS,Aldridge PD

    更新日期:2017-01-24 00:00:00

  • Comparison of efficacy and safety of conventional laparoscopic radical prostatectomy by the transperitoneal versus extraperitoneal procedure.

    abstract::Worldwide, prostate cancer (PCa) is the second most common malignancy in males. We undertook a meta-analysis to compare the efficacy and safety of conventional laparoscopic radical prostatectomy with a transperitoneal (TLRP) approach, versus that of an extraperitoneal (ELRP) approach, for treatment of localized PCa. A...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/srep14442

    authors: De Hong C,Liang Ren L,Qiang W,Jia W,Ying Chun H,Lu Y,Zheng Hua L,Heng Ping L,Shi Bing Y,Yun Xiang L

    更新日期:2015-10-13 00:00:00

  • Deterministic Current Induced Magnetic Switching Without External Field using Giant Spin Hall Effect of β-W.

    abstract::Giant spin Hall effect (GSHE) has received significant attention for its potential in future spintronic applications. Spin current via GSHE-based thin films provides an effective and promising means to manipulate magnetization. However, an external in-plane magnetic field is required to consistently switch the perpend...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26586-z

    authors: Chen W,Qian L,Xiao G

    更新日期:2018-05-25 00:00:00

  • Human and ecological determinants of the spatial structure of local breed diversity.

    abstract::Since domestication, a large number of livestock breeds adapted to local conditions have been created by natural and artificial selection, representing one of the most powerful ways in which human groups have constructed niches to meet their need. Although many authors have described local breeds as the result of cult...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-24641-3

    authors: Colino-Rabanal VJ,Rodríguez-Díaz R,Blanco-Villegas MJ,Peris SJ,Lizana M

    更新日期:2018-04-24 00:00:00

  • Structural features distinguishing infectious ex vivo mammalian prions from non-infectious fibrillar assemblies generated in vitro.

    abstract::Seeded polymerisation of proteins forming amyloid fibres and their spread in tissues has been implicated in the pathogenesis of multiple neurodegenerative diseases: so called "prion-like" mechanisms. While ex vivo mammalian prions, composed of multichain assemblies of misfolded host-encoded prion protein (PrP), act as...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-36700-w

    authors: Terry C,Harniman RL,Sells J,Wenborn A,Joiner S,Saibil HR,Miles MJ,Collinge J,Wadsworth JDF

    更新日期:2019-01-23 00:00:00

  • Combined influence of poor health behaviours on the prevalence and 15-year incidence of age-related macular degeneration.

    abstract::We aimed to establish the collective influence of four lifestyle practices (physical activity, diet, smoking and alcohol consumption) on the prevalence and incidence of AMD. At baseline, 2428 participants aged 49+ with complete lifestyle and AMD data were examined, and of these, 1903 participants were re-examined 15 y...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04697-3

    authors: Gopinath B,Liew G,Flood VM,Joachim N,Burlutsky G,Mitchell P

    更新日期:2017-06-28 00:00:00

  • Predictive value of cervical cytokine, antimicrobial and microflora levels for pre-term birth in high-risk women.

    abstract::Spontaneous preterm birth (sPTB, delivery <37 weeks gestation), accounts for approximately 10% of births worldwide; the aetiology is multifactorial with intra-amniotic infection being one contributing factor. This study aimed to determine whether asymptomatic women with a history of sPTB or cervical surgery have alter...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47756-7

    authors: Manning R,James CP,Smith MC,Innes BA,Stamp E,Peebles D,Bajaj-Elliott M,Klein N,Bulmer JN,Robson SC,Lash GE

    更新日期:2019-08-02 00:00:00

  • A staged screening of registered drugs highlights remyelinating drug candidates for clinical trials.

    abstract::There is no treatment for the myelin loss in multiple sclerosis, ultimately resulting in the axonal degeneration that leads to the progressive phase of the disease. We established a multi-tiered platform for the sequential screening of drugs that could be repurposed as remyelinating agents. We screened a library of 2,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45780

    authors: Eleuteri C,Olla S,Veroni C,Umeton R,Mechelli R,Romano S,Buscarinu MC,Ferrari F,Calò G,Ristori G,Salvetti M,Agresti C

    更新日期:2017-04-07 00:00:00

  • Ocular Manifestations of Leukemia and Results of Treatment with Intravitreal Methotrexate.

    abstract::Ocular involvement in leukemia is considered rare. Ocular symptoms can be the presenting signs of leukemia, they can appear after diagnosis has been established, or they can be the first manifestation of a relapse after remission. We report, to the best of our knowledge for the first time, the ocular manifestation of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58654-8

    authors: Vishnevskia-Dai V,Sella King S,Lekach R,Fabian ID,Zloto O

    更新日期:2020-02-06 00:00:00

  • Corrigendum: Treponema pallidum (syphilis) antigen TpF1 induces angiogenesis through the activation of the IL-8 pathway.

    abstract::This corrects the article DOI: 10.1038/srep18785. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/srep46945

    authors: Pozzobon T,Facchinello N,Bossi F,Capitani N,Benagiano M,Di Benedetto G,Zennaro C,West N,Codolo G,Bernardini M,Baldari CT,D'Elios MM,Pellegrini L,Argenton F,de Bernard M

    更新日期:2018-02-16 00:00:00

  • Adherence to the Mediterranean diet is associated with a higher BMD in middle-aged and elderly Chinese.

    abstract::Previous studies showed that better adherence to the Mediterranean diet (MD) is associated with lower risk of chronic diseases, but limited data are available on bone health. We investigated the association of the MD with bone mineral density (BMD) in Chinese adults. We included 2371 participants aged 40-75 years in t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25662

    authors: Chen GD,Dong XW,Zhu YY,Tian HY,He J,Chen YM

    更新日期:2016-05-09 00:00:00

  • Thermal energy storage and thermal conductivity properties of Octadecanol-MWCNT composite PCMs as promising organic heat storage materials.

    abstract::Fatty alcohols have been identified as promising organic phase change materials (PCMs) for thermal energy storage, because of their suitable temperature range, nontoxicity and can be obtained from both natural and synthetic sources. Like all other organic PCMs, octadecanol (OD) as PCM suffers from low thermal conducti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64149-3

    authors: Al-Ahmed A,Sarı A,Mazumder MAJ,Hekimoğlu G,Al-Sulaiman FA,Inamuddin

    更新日期:2020-06-08 00:00:00

  • Relationship between Lipoprotein (a) and cognitive function - Results from the Berlin Aging Study II.

    abstract::It has been suggested that an age-related loss of cognitive function might be driven by atherosclerotic effects associated with altered lipid patterns. However, the relationship between Lipoprotein (a) [Lp(a)] and healthy cognitive aging has not yet been sufficiently investigated. For the current analysis we used the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66783-3

    authors: Röhr F,Bucholtz N,Toepfer S,Norman K,Spira D,Steinhagen-Thiessen E,Lill CM,Bertram L,Demuth I,Buchmann N,Düzel S

    更新日期:2020-06-30 00:00:00

  • Building early-larval sexing systems for genetic control of the Australian sheep blow fly Lucilia cuprina using two constitutive promoters.

    abstract::Transgenic sexing strains (TSS) that carry conditional female lethal genes are advantageous for genetic control programs based on the sterile insect technique (SIT). It is desirable if females die early in development as larval diet is a major cost for mass production facilities. This can be achieved by using a gene p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02763-4

    authors: Yan Y,Linger RJ,Scott MJ

    更新日期:2017-05-31 00:00:00