Abstract:
:Optical projection tomography (OPT) is a tool used for three-dimensional imaging of millimeter-scale biological samples, with the advantage of exhibiting isotropic resolution typically in the micron range. OPT can be divided into two types: transmission OPT (tOPT) and emission OPT (eOPT). Compared with eOPT, tOPT discriminates different tissues based on their absorption coefficient, either intrinsic or after specific staining. However, it fails to distinguish muscle fibers whose absorption coefficients are similar to surrounding tissues. To circumvent this problem, in this article we demonstrate a polarization sensitive OPT system which improves the detection and 3D imaging of muscle fibers by using polarized light. We also developed image acquisition and processing protocols that, together with the system, enable the clear visualization of muscles. Experimental results show that the muscle fibers of diaphragm and stomach, difficult to be distinguished in regular tOPT, were clearly displayed in our system, proving its potential use. Moreover, polarization sensitive OPT was fused with tOPT to investigate the stomach tissue comprehensively. Future applications of polarization sensitive OPT could be imaging other fiber-like structures such as myocardium or other tissues presenting high optical anisotropy.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Fang M,Dong D,Zeng C,Liang X,Yang X,Arranz A,Ripoll J,Hui H,Tian Jdoi
10.1038/srep19241subject
Has Abstractpub_date
2016-01-11 00:00:00pages
19241issn
2045-2322pii
srep19241journal_volume
6pub_type
杂志文章abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...
journal_title:Scientific reports
pub_type: 已发布勘误
doi:10.1038/s41598-018-28601-9
更新日期:2018-07-04 00:00:00
abstract::The Schumann Resonances (ScR) are Extremely Low Frequency (ELF) electromagnetic resonances in the Earth-ionosphere cavity excited by global lightning discharges. This natural electromagnetic noise has likely existed on the Earth ever since the Earth had an atmosphere and an ionosphere, hence surrounding us throughout ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-36341-z
更新日期:2019-02-07 00:00:00
abstract::A millisecond micro-RNA separation of a mixture of total RNA and genomic DNA, extracted from cultured HeLa cells, was successfully achieved using a hybrid structure of nanopillars and nanoslits contained inside a microchannel. The nanopillars, 250-nm in diameter and 100-nm in height, were fabricated with a 750-nm spac...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep43877
更新日期:2017-03-08 00:00:00
abstract::Chromatin remodeling has been newly established as an important cancer genome characterization and recent exome and whole-genome sequencing studies of hepatocellular carcinoma (HCC) showed that recurrent inactivating mutations in SWI/SNF subunits involved in the molecular basis of hepatocarcinogenesis. To test the hyp...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep04147
更新日期:2014-02-21 00:00:00
abstract::The immune system is constantly challenged, being required to protect the organism against a wide variety of infectious pathogens and, at the same time, to avoid autoimmune disorders. One of the most important molecules involved in these events is the Major Histocompatibility Complex class I (MHC-I), responsible for b...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep18413
更新日期:2015-12-17 00:00:00
abstract::The spinal dorsal horn (SDH) is comprised of distinct neuronal populations that process different somatosensory modalities. Somatostatin (SST)-expressing interneurons in the SDH have been implicated specifically in mediating mechanical pain. Identifying the transcriptomic profile of SST neurons could elucidate the uni...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-25110-7
更新日期:2018-05-01 00:00:00
abstract::The transient silencing effects currently demonstrated by nonviral siRNA delivery systems limit the therapeutic utility of RNAi, but it remains a technical challenge to prolong duration of gene silencing. We have developed a T7 autogene-based hybrid mRNA/DNA system to enable long-term expression of shRNA in cytoplasm ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-39407-8
更新日期:2019-02-28 00:00:00
abstract::Meckel syndrome (MKS) is an inherited autosomal recessive hepatorenal fibrocystic syndrome, caused by mutations in TMEM67, characterized by occipital encephalocoele, renal cysts, hepatic fibrosis, and polydactyly. Here we describe an ovine model of MKS, with kidney and liver abnormalities, without polydactyly or occip...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-01519-4
更新日期:2017-05-09 00:00:00
abstract::Ovarian cancer is a highly aggressive disease and novel treatments are required. Thyroid hormones binding to αvβ3 integrin produced growth-promoting activities in ovarian cancer and we hypothesized that natural thyroid hormone derivatives may antagonize these actions. The effect of three antagonists, tetraiodoacetic a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-16593-x
更新日期:2017-11-28 00:00:00
abstract::Fluorescence-based western blots are quantitative in principal, but require determining linear range for each antibody. Here, we use microwestern array to rapidly evaluate suitable conditions for quantitative western blotting, with up to 192 antibody/dilution/replicate combinations on a single standard size gel with a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-29436-0
更新日期:2018-07-27 00:00:00
abstract::Flux balance analysis is the only modelling approach that is capable of producing genome-wide predictions of gene essentiality that may aid to unveil metabolic liabilities in cancer. Nevertheless, a systemic validation of gene essentiality predictions by flux balance analysis is currently missing. Here, we critically ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep10738
更新日期:2015-06-04 00:00:00
abstract::Vaginal microbiota is an important early source of bacterial colonization for newborns. However, only a few small studies have investigated the composition of vaginal microbiota during labor. In this work, we analyzed vaginal swabs collected at 36 weeks gestation and at the onset of labor from 256 women participating ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-17972-0
更新日期:2017-12-14 00:00:00
abstract::Regular overconsumption of sugar is associated with obesity and type-2 diabetes, but how genetic factors contribute to variable sugar preferences and intake levels remains mostly unclear. Here we provide evidence for the usefulness of a Drosophila larva model to investigate genetic influence on vulnerability to sugar ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-17760-w
更新日期:2017-12-15 00:00:00
abstract::mRNAs containing premature termination codons (PTCs) are rapidly degraded through nonsense-mediated mRNA decay (NMD). However, some PTC-containing mRNAs evade NMD, and might generate mutant proteins responsible for various diseases, including cancers. Using PTC-containing human genomic β-globin constructs, we show tha...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-16177-9
更新日期:2017-11-20 00:00:00
abstract::Neutrophils are the first immune cells to kill invading microbes at sites of infection using a variety of processes, including the release of proteases, phagocytosis and the production of neutrophil extracellular traps (NETs). NET formation, or NETosis, is a specific and highly efficient process, which is induced by a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-53058-9
更新日期:2019-11-12 00:00:00
abstract::The study aimed at investigating the extent to which the brain adaptively exploits or compensates interaction torque (IT) during movement control in various velocity and load conditions. Participants performed arm pointing movements toward a horizontal plane without a prescribed reach endpoint at slow, neutral and rap...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep38845
更新日期:2016-12-12 00:00:00
abstract::Chemical weathering is a fundamental geochemical process regulating the atmosphere-land-ocean fluxes and earth's climate. It is under natural conditions driven primarily by weak carbonic acid that originates from atmosphere CO2 or soil respiration. Chemical weathering is therefore assumed as positively coupled with it...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep11941
更新日期:2015-07-07 00:00:00
abstract::Fairly poor data are available on the relationship between taste perception, food preferences and oral microbiota. In the present study, we investigated the hypothesis that subjects with higher responsiveness to 6-n-propylthiuracil (PROP) might be characterized by a different taste sensitivity and tongue microbiota co...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-40374-3
更新日期:2019-03-05 00:00:00
abstract::The role of the smoothelin-like 1 (SMTNL1) protein in mediating vascular smooth muscle contractile responses to intraluminal pressure was examined in resistance vessels. Mesenteric arterioles from wild type (WT) and SMTNL1 global knock-out (KO) mice were examined with pressure myography. SMTNL1 deletion was associated...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-36564-0
更新日期:2019-01-24 00:00:00
abstract::A layered nanoreactor (zinc hydroxide gallate/nitrate nanohybrid) has been designed as a nano-vessel to confine the gallate/nitrate reaction inside zinc hydroxide layers for production of metal/nitrogen-doped carbon catalysts. Metals (Fe2+, Co2+ and Ni2+) doped and bare zinc hydroxide nitrates (ZHN) were synthesized a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-21782-3
更新日期:2018-02-21 00:00:00
abstract::The spectral distribution of light emitted from a scanning tunnelling microscope junction not only bears its intrinsic plasmonic signature but is also imprinted with the characteristics of optical frequency fluc- tuations of the tunnel current. Experimental spectra from gold-gold tunnel junctions are presented that sh...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-03766-x
更新日期:2017-06-14 00:00:00
abstract::Convenient drug-resistance testing of viral mutants is indispensable to effective treatment of viral infection. We developed a novel fluorometric assay for phenotypic differentiation of drug-resistant mutants of human immunodeficiency virus-I protease (HIV-PR) which uses enzymatic and peptide-specific fluorescence (FL...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep10323
更新日期:2015-05-19 00:00:00
abstract::3D laboratory models of cancer are designed to recapitulate the biochemical and biophysical characteristics of the tumour microenvironment and aim to enable studies of cancer, and new therapeutic modalities, in a physiologically-relevant manner. We have developed an in vitro 3D model comprising a central high-density ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-68999-9
更新日期:2020-07-21 00:00:00
abstract::Co-existing infection/inflammation and birth asphyxia potentiate the risk of developing neonatal encephalopathy (NE) and adverse outcome. In a newborn piglet model we assessed the effect of E. coli lipopolysaccharide (LPS) infusion started 4 h prior to and continued for 48 h after hypoxia on brain cell death and syste...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-46488-y
更新日期:2019-07-15 00:00:00
abstract::Pre-stimulus alpha (8-12 Hz) and beta (16-20 Hz) oscillations have been frequently linked to the prediction of upcoming sensory input. Do these frequency bands serve as a neural marker of linguistic prediction as well? We hypothesized that if pre-stimulus alpha and beta oscillations index language predictions, their p...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-56600-x
更新日期:2019-12-27 00:00:00
abstract::Sacrospinous ligament fixation (SSLF) is one of the most utilized surgeries in the management of pelvic organ prolapse (POP). We conducted a large-series study of SSLF in a tertiary center by an experienced urogynecologic team. The 453 women with POP who underwent SSLF at National Taiwan University Hospital in the per...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-61995-z
更新日期:2020-03-19 00:00:00
abstract::ATP depletion and succinate accumulation during ischemia lead to oxidative damage to mammalian organs upon reperfusion. In contrast, freshwater turtles survive weeks of anoxia at low temperatures without suffering from oxidative damage upon reoxygenation, but the mechanisms are unclear. To determine how turtles surviv...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-39836-5
更新日期:2019-02-26 00:00:00
abstract::Visualization of the surgically operated tissues is vital to improve surgical model animals including mouse. Urological surgeries for urethra include series of fine manipulations to treat the increasing number of birth defects such as hypospadias. Hence visualization of the urethral status is vital. Inappropriate uret...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-75184-5
更新日期:2020-10-26 00:00:00
abstract::The elastic responsiveness of single cellulose nanofibres is important for advanced analysis of biological tissues and their use in sophisticated functional materials. However, the mechanical responsiveness derived from the twisted structure of cellulose nanofibres (CNFs) has remained unexplored. In this study, finite...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-80890-1
更新日期:2021-01-12 00:00:00
abstract::Cellulose is the major component of cell wall materials. A 300 bp specific fragment from the cDNA fragment was chosen to insert into vector pFGC1008 at forward and reverse orientations to construct the recombinant RNAi vector. Knockdown of BoiCesA caused "dwarf" phenotype with smaller leaves and a loss of the content ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep41397
更新日期:2017-02-07 00:00:00