Comparison of the conventional multiplex RT-PCR, real time RT-PCR and Luminex xTAG® RVP fast assay for the detection of respiratory viruses.

Abstract:

:Detection of respiratory viruses using polymerase chain reaction (PCR) is sensitive, specific and cost effective, having huge potential for patient management. In this study, the performance of an in-house developed conventional multiplex RT-PCR (mRT-PCR), real time RT-PCR (rtRT-PCR) and Luminex xTAG(®) RVP fast assay (Luminex Diagnostics, Toronto, Canada) for the detection of respiratory viruses was compared. A total 310 respiratory clinical specimens predominantly from pediatric patients, referred for diagnosis of influenza A/H1N1pdm09 from August 2009 to March 2011 were tested to determine performance characteristic of the three methods. A total 193 (62.2%) samples were detected positive for one or more viruses by mRT-PCR, 175 (56.4%) samples by real time monoplex RT-PCR, and 138 (44.5%) samples by xTAG(®) RVP fast assay. The overall sensitivity of mRT-PCR was 96.9% (95% CI: 93.5, 98.8), rtRT-PCR 87.9% (95% CI: 82.5, 92.1) and xTAG(®) RVP fast was 68.3% (95% CI: 61.4, 74.6). Rhinovirus was detected most commonly followed by respiratory syncytial virus group B and influenza A/H1N1pdm09. The monoplex real time RT-PCR and in-house developed mRT-PCR are more sensitive, specific and cost effective than the xTAG(®) RVP fast assay.

journal_name

J Med Virol

authors

Choudhary ML,Anand SP,Tikhe SA,Walimbe AM,Potdar VA,Chadha MS,Mishra AC

doi

10.1002/jmv.24299

subject

Has Abstract

pub_date

2016-01-01 00:00:00

pages

51-7

issue

1

eissn

0146-6615

issn

1096-9071

journal_volume

88

pub_type

杂志文章
  • Weathering the pandemic: How the Caribbean Basin can use viral and environmental patterns to predict, prepare, and respond to COVID-19.

    abstract::The 2020 coronavirus pandemic is developing at different paces throughout the world. Some areas, like the Caribbean Basin, have yet to see the virus strike at full force. When it does, there is reasonable evidence to suggest the consequent COVID-19 outbreaks will overwhelm healthcare systems and economies. This is par...

    journal_title:Journal of medical virology

    pub_type: 杂志文章,评审

    doi:10.1002/jmv.25864

    authors: de Ángel Solá DE,Wang L,Vázquez M,Méndez-Lázaro PA

    更新日期:2020-09-01 00:00:00

  • Real-time PCR for detection and quantitation of hepatitis B virus DNA.

    abstract::A sensitive and reproducible real-time PCR assay based on TaqMan technology was developed for the detection and quantitation of hepatitis B virus (HBV) DNA in serum, and compared with an "in-house" qualitative PCR assay. HBV DNA was measured in 125 serum samples from 76 hepatitis B patients, consisting of 22 patients ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.2027

    authors: Chen RW,Piiparinen H,Seppänen M,Koskela P,Sarna S,Lappalainen M

    更新日期:2001-10-01 00:00:00

  • "Cytomegalovirus disease" in renal allograft recipients: is human herpesvirus 7 a co-factor for disease progression?

    abstract::Fifty-six renal allograft recipients were studied prospectively for 3 months or longer after transplant. The polymerase chain reaction (PCR) was used to screen peripheral blood leucocyte (PBL) specimens for CMV, human herpesvirus 6 (HHV6) and human herpesvirus 7 (HHV7) DNA (DNAemia) in 67 healthy controls and in seria...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/(SICI)1096-9071(199604)48:4<295::AID-JMV1>

    authors: Osman HK,Peiris JS,Taylor CE,Warwicker P,Jarrett RF,Madeley CR

    更新日期:1996-04-01 00:00:00

  • The stability of herpes simplex virus on vaginal tampons.

    abstract::Herpes simplex virus can be quantitatively recovered from vaginal tampons suspended in tissue culture medium and stored over a wide range of temperatures. Because herpes simplex virus is stable for several days with refrigeration or after freezing, this method of culture of cervicovaginal virus lends itself to epidemi...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890030306

    authors: Myers MG,Ekwo EE,Pitts AK

    更新日期:1979-01-01 00:00:00

  • Quantification of infectious duck hepatitis B virus by radioimmunofocus assay.

    abstract::A simple method is described for the precise quantification of infectious duck hepatitis B virus (DHBV) in cell culture, using a radioimmunofocus assay (RIFA). Primary duck hepatocyte cell cultures were infected with serial dilutions of viral samples as for a plaque assay, but then maintained with liquid overlay mediu...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:

    authors: Anderson DA,Grgacic EV,Luscombe CA,Gu X,Dixon R

    更新日期:1997-08-01 00:00:00

  • Hepatitis C virus genotypes in French blood donors.

    abstract::The prevalence of different hepatitis C virus (HCV) genotypes in HCV infected individuals and the relation between the HCV genotypes and the source of the infection are controversial. The aim of this study was to determine the HCV genotypes in French blood donors. Fifty-one anti-HCV positive blood donors were studied ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890450408

    authors: Gournay J,Marcellin P,Martinot-Peignoux M,Degott C,Gabriel F,Courtois F,Branger M,Wild AM,Erlinger S,Benhamou JP

    更新日期:1995-04-01 00:00:00

  • A natural inter-genotypic (2b/1b) recombinant of hepatitis C virus in the Philippines.

    abstract::The prevalence study and the characterization of hepatitis C virus (HCV) was carried out in the Philippines and the sequence determination of the 5'-untranslated region (5'-UTR)-Core and the NS5B regions of HCV was carried out in this study. An HCV strain (SE-03-07-1689) collected in Metro Manila, Philippines, belonge...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20714

    authors: Kageyama S,Agdamag DM,Alesna ET,Leaño PS,Heredia AM,Abellanosa-Tac-An IP,Jereza LD,Tanimoto T,Yamamura J,Ichimura H

    更新日期:2006-11-01 00:00:00

  • Detection of a human rotavirus strain different from types 1 and 2--a new subgroup? Epidemiology of subgroups in a Swedish and an Ethiopian community.

    abstract::A possible new subgroup of human rotavirus was found by crossed immunoelectrophoresis and enzyme-linked immunosorbent assay. The epidemiology of the established subgroups 1 and 2 and this new variant was studied in two different communities. Of 398 rotavirus isolates from Malmö, Sweden, 26.8% were of type 1, 71.7% of ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890120205

    authors: Tufvesson B

    更新日期:1983-01-01 00:00:00

  • Monitoring low cytomegalovirus viremia in transplanted patients by a real-time PCR on plasma.

    abstract::Until recently, human cytomegalovirus (hCMV) infection and anti-CMV treatment in transplanted patients have been monitored essentially by pp65 antigenemia, which is time-consuming and requires experienced operators. For the last two years, pp65 antigenemia levels have tended to be lower than previously in our laborato...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20326

    authors: Schvoerer E,Henriot S,Zachary P,Freitag R,Fuchs A,Fritsch S,Risch S,Meyer N,Caillard S,Lioure B,Stoll-Keller F

    更新日期:2005-05-01 00:00:00

  • Receptor for pre-S1(21-47) component of hepatitis B virus on the liver cell: role in virus cell interaction.

    abstract::Attachment of hepatitis B virus to a hepatoblastoma cell line (HepG2) was examined using a synthetic peptide corresponding to the pre-S1 (21-47) region of the envelope protein. Scatchard analysis revealed a single class binding site of Kd 104 +/- 27 nM/l and 5.4 +/- 1.2 x 10(5) sites per cell. Competition of HBV with ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890370208

    authors: Dash S,Rao KV,Panda SK

    更新日期:1992-06-01 00:00:00

  • Assessment of in vitro prophylactic and therapeutic efficacy of chloroquine against Chikungunya virus in vero cells.

    abstract::The resurgence of Chikungunya virus (CHIKV) in the form of unprecedented and explosive epidemics in India and the Indian Ocean islands after a gap of 32 years is a major public health concern. Currently, there is no specific therapy available to treat CHIKV infection. In the present study, the in vitro prophylactic an...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.21663

    authors: Khan M,Santhosh SR,Tiwari M,Lakshmana Rao PV,Parida M

    更新日期:2010-05-01 00:00:00

  • Coronavirus-like particles in adults in Melbourne, Australia.

    abstract::Coronavirus-like particle(s) (CVLP) are faecal-derived pleomorphic membrane bound virus-like particles characterised by a fringe of club-shaped spikes that measure about 27 nm in length. The association of CVLP with a variety of social, clinical, and epidemiological factors was examined after a 69 month survey of faec...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890290404

    authors: Marshall JA,Thompson WL,Gust ID

    更新日期:1989-12-01 00:00:00

  • Human T-cell lymphotropic virus antibody prevalence in HIV-1-infected individuals attending a sexual health clinic in South-East London.

    abstract::Human immunodeficiency virus (HIV) and human T-cell lymphotropic virus (HTLV) are both retroviruses with similar routes of transmission. A number of reports suggest variable clinical outcomes in HIV and HTLV co-infected individuals. There is no published information regarding the prevalence of HIV and HTLV co-infectio...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20336

    authors: Cooke FJ,Geretti AM,Zuckerman M

    更新日期:2005-06-01 00:00:00

  • Recombinant Newcastle Disease virus capsids displaying enterovirus 71 VP1 fragment induce a strong immune response in rabbits.

    abstract::The complete VP1 protein of EV71 was truncated into six segments and fused to the C-terminal ends of full-length nucleocapsid protein (NPfl) and truncated NP (NPt; lacks 20% amino acid residues from its C-terminal end) of newcastle disease virus (NDV). Western blot analysis using anti-VP1 rabbit serum showed that the ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20668

    authors: Sivasamugham LA,Cardosa MJ,Tan WS,Yusoff K

    更新日期:2006-08-01 00:00:00

  • Detection of human cytomegalovirus early and late antigen and DNA production in cell culture and the effects of dimethyl sulfoxide, dexamethasone, and DNA inhibitors on early antigen induction.

    abstract::Recently a conventional method for the laboratory diagnosis of human cytomegalovirus (HCMV) infection was improved by using centrifugation culture to enhance viral adsorption and by detecting HCMV early antigen and DNA. Comparison of the sensitivity of three rapid methods using commercial diagnostic reagents for the d...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890300204

    authors: Li SB,Fong CK

    更新日期:1990-02-01 00:00:00

  • Evolution rate of hepatitis delta virus RNA isolated in Taiwan.

    abstract::The complete RNA sequences of hepatitis delta viruses (HDV) isolated at 3 years apart from a chronic delta hepatitis patient in Taiwan were determined. The sequence analysis showed an overall evolution rate of 3.18 x 10(-3) substitutions/nucleotide/year. The evolution rates in different parts of HDV RNA varied. The hy...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890430414

    authors: Chao YC,Tang HS,Hsu CT

    更新日期:1994-08-01 00:00:00

  • Hepatitis B virus genotype D strains from Estonia share sequence similarity with strains from Siberia and may specify ayw4.

    abstract::The genotypes and subtypes of 205 HBV isolates collected during 1989-2002 in Estonia and 14 other regions of the former USSR were determined by sequencing and phylogenetic analysis of the S gene. The in Europe prevailing genotypes, A and D, were also circulating in the whole territory of the former USSR including Esto...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20169

    authors: Tallo T,Norder H,Tefanova V,Krispin T,Priimägi L,Mukomolov S,Mikhailov M,Magnius LO

    更新日期:2004-10-01 00:00:00

  • Detection and typing of respiratory adenoviruses in a single-tube multiplex polymerase chain reaction.

    abstract::A multiplex polymerase chain reaction (PCR) assay that is capable of detecting and typing six serotypes of respiratory adenovirus (Ad) was developed, using multiple sets of type-specific primers. The detection of each different serotype depended on distinguishing different numbers and sizes of amplification products o...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.2174

    authors: Na BK,Kim JH,Shin GC,Lee JY,Lee JS,Kang C,Kim WJ

    更新日期:2002-04-01 00:00:00

  • MxA protein in capillary blood of children with viral infections.

    abstract::Capillary blood of febrile children was lysed by using a lysis buffer containing ascorbic acid. MxA quantitation was performed by an immunochemiluminescent assay. The MxA values were significantly higher in capillary blood of infants with viral infections due to adenovirus (n = 5), rotavirus (n = 15), or respiratory s...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:

    authors: Chieux V,Hober D,Chehadeh W,Harvey J,Alm G,Cousin J,Ducoulombier H,Wattre P

    更新日期:1999-12-01 00:00:00

  • Epidemiological features and viral shedding in children with SARS-CoV-2 infection.

    abstract::A pandemic of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) infection broke out all over the world; however, epidemiological data and viral shedding in pediatric patients are limited. We conducted a retrospective, multicenter study, and followed-up with all children from the families with SARS-CoV-2 inf...

    journal_title:Journal of medical virology

    pub_type: 杂志文章,多中心研究

    doi:10.1002/jmv.26180

    authors: Hua CZ,Miao ZP,Zheng JS,Huang Q,Sun QF,Lu HP,Su FF,Wang WH,Huang LP,Chen DQ,Xu ZW,Ji LD,Zhang HP,Yang XW,Li MH,Mao YY,Ying MZ,Ye S,Shu Q,Chen EF,Liang JF,Wang W,Chen ZM,Li W,Fu JF

    更新日期:2020-11-01 00:00:00

  • Transmission of hepatitis C virus in an orthopedic hospital ward.

    abstract::Healthcare-associated infections with hepatitis C virus (HCV) hitherto have been observed mainly in hemodialysis settings as well as in hematology and oncology wards. In this communication, molecular and epidemiologic investigations to elucidate an HCV outbreak in an orthopedic ward are reported. One hundred and thirt...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.21394

    authors: Ross RS,Viazov S,Khudyakov YE,Xia GL,Lin Y,Holzmann H,Sebesta C,Roggendorf M,Janata O

    更新日期:2009-02-01 00:00:00

  • Hepatitis C virus genotype 3 predominates in North and Central India and is associated with significant histopathologic liver disease.

    abstract::Hepatitis C virus (HCV) genotypes help to tailor the treatment response, but their influence on the disease severity and association with hepatic steatosis is not well understood. The prevalence of HCV genotypes and their correlation with the histopathological severity of liver disease and steatosis in Indian patients...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20561

    authors: Hissar SS,Goyal A,Kumar M,Pandey C,Suneetha PV,Sood A,Midha V,Sakhuja P,Malhotra V,Sarin SK

    更新日期:2006-04-01 00:00:00

  • Evaluation of an immunochromatography method for rapid detection of noroviruses in clinical specimens in Thailand.

    abstract::Norovirus (NoV) is a causative agent of gastroenteritis in children and adults worldwide. Although reverse transcription-polymerase chain reaction (RT-PCR) has been accepted as the standard method for diagnosis of NoV infection, it requires well-trained personnel and sophisticated equipments. Performance of a commerci...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.21916

    authors: Thongprachum A,Khamrin P,Chaimongkol N,Malasao R,Okitsu S,Mizuguchi M,Maneekarn N,Ushijima H

    更新日期:2010-12-01 00:00:00

  • Nitric oxide radical suppresses replication of wild-type dengue 2 viruses in vitro.

    abstract::Nitric oxide is well accepted as one of the defenses for inhibiting viral dissemination. Macrophages and cells in the macrophage lineage are professional nitric oxide producers which sub-serve as target for dengue virus. The interaction between nitric oxide and dengue virus in such target cell is unknown. In this repo...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20418

    authors: Charnsilpa W,Takhampunya R,Endy TP,Mammen MP Jr,Libraty DH,Ubol S

    更新日期:2005-09-01 00:00:00

  • Propagation of hepatitis A virus in human embryo fibroblasts.

    abstract::human diploid fibroblasts and human primary liver cell carcinoma cells (PLC/PRF/5) were infected with hepatitis A virus (HAV) adapted to growth in cell culture or derived directly from human stool. Viral antigen was expressed in PLC/PRF/5 cells 28 days after infection with cell culture-adapted HAV, and 50 days after i...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890070308

    authors: Gauss-Müller V,Frösner GG,Deinhardt F

    更新日期:1981-01-01 00:00:00

  • Distribution of BK polyomavirus genotypes in Tunisian renal transplant recipients.

    abstract::BK polyomavirus (BKV) is a ubiquitous virus in humans that remains latent in the urogenital tract after a primary infection during childhood. The virus, which is reactivated frequently and excreted in urine, can cause nephropathy in renal transplant recipients. BKV sequences are classified into four subtypes (I-IV). S...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.22035

    authors: Boukoum H,Nahdi I,Foulongne V,Zallema D,Aloui S,Achour A,Segondy M,Aouni M

    更新日期:2011-04-01 00:00:00

  • Emergence of uncommon HIV-1 non-B subtypes and circulating recombinant forms and trends in transmission of antiretroviral drug resistance in patients with primary infection during the 2013-2015 period in Marseille, Southeastern France.

    abstract::Primary HIV-1 infections (PHI) with non-B subtypes are increasing in developed countries while transmission of HIV-1 harboring antiretroviral resistance-associated mutations (RAMs) remains a concern. This study assessed non-B HIV-1 subtypes and RAMs prevalence among patients with PHI in university hospitals of Marseil...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.25228

    authors: Tamalet C,Tissot-Dupont H,Motte A,Tourrès C,Dhiver C,Ravaux I,Poizot-Martin I,Dieng T,Tomei C,Bregigeon S,Zaegel-Faucher O,Laroche H,Aherfi S,Mokhtari S,Chaudet H,Ménard A,Brouqui P,Stein A,Colson P

    更新日期:2018-10-01 00:00:00

  • Herpes simplex and human papilloma virus coinfections in oral mucosa of men-A 6-year follow-up study.

    abstract::Herpes simplex virus (HSV) establishes latency in neurons and recurrent infections in oral mucosa. This prospective study analyzes HSV prevalence in oral mucosal brush samples from men with known human papillomavirus (HPV) status. We hypothesized that HSV-1-infection could facilitate HPV persistence as a cofactor. Thi...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.24965

    authors: Mäki J,Paavilainen H,Kero K,Hukkanen V,Syrjänen S

    更新日期:2018-03-01 00:00:00

  • Diversity of viruses associated with acute gastroenteritis in children hospitalized with diarrhea in Ho Chi Minh City, Vietnam.

    abstract::A molecular epidemiological study on common diarrheal viruses was conducted in Ho Chi Minh City, Vietnam between October 2002 and September 2003. Fecal samples were collected from 1,010 hospitalized children with acute gastroenteritis. Those samples were screened for groups A, B, and C rotavirus, adenovirus, genogroup...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20857

    authors: Nguyen TA,Yagyu F,Okame M,Phan TG,Trinh QD,Yan H,Hoang KT,Cao AT,Le Hoang P,Okitsu S,Ushijima H

    更新日期:2007-05-01 00:00:00

  • Molecular and epidemiological characteristics of blood-borne virus infections among recent immigrants in Spain.

    abstract::The increased immigration from developing regions to Western countries raises public health concerns related to blood-borne viruses. The prevalence of human immunodeficiency virus (HIV), hepatitis B virus (HBV), hepatitis C virus (HCV), and human T-lymphotropic virus (HTLV) infections among recent immigrants attending...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20744

    authors: Toro C,Jiménez V,Rodríguez C,Del Romero J,Rodés B,Holguín A,Alvarez P,García-Campello M,Gómez-Hernando C,Guelar A,Sheldon J,de Mendoza C,Simón A,Soriano V

    更新日期:2006-12-01 00:00:00