Complete coding regions of the prototypes enterovirus B93 and C95: phylogenetic analyses of the P1 and P3 regions of EV-B and EV-C strains.

Abstract:

:Complete coding regions were sequenced for two new enterovirus genomes: EV-B93 previously identified by VP1 sequencing, derived from a child with acute flaccid paralysis in the Democratic Republic of Congo; and EV-C95 from a French soldier with acute gastroenteritis in Djibouti. The EV-B93 P1 had more than 30% nucleotide divergence from other EV-B types, with highest similarity to E-15 and EV-B80. The P1 nucleotide sequence of EV-C95 was most similar, 71%, to CV-A21. Complete coding regions for the new enteroviruses were compared with those of 135 EV-B and 176 EV-C strains representing all types available in GenBank. When strains from the same outbreak or strains isolated during the same year in the same geographical region were excluded, 27 of the 58 EV-B, and 16 of the 23 EV-C types were represented by more than one sequence. However, for EV-B the P3 sequences formed three clades mainly according to origin or time of isolation, irrespective of type, while for EV-C the P3 sequences segregated mainly according to disease manifestation, with most strains causing paralysis, including polioviruses, forming one clade, and strains causing respiratory illness forming another. There was no intermixing of types between these two clades, apart from two EV-C96 strains. The EV-B P3 sequences had lower inter-clade and higher intra-clade variability as compared to the EV-C sequences, which may explain why inter-clade recombinations are more frequent in EV-B. Further analysis of more isolates may shed light on the role of recombinations in the evolution of EV-B in geographical context.

journal_name

J Med Virol

authors

Junttila N,Lévêque N,Magnius LO,Kabue JP,Muyembe-Tamfum JJ,Maslin J,Lina B,Norder H

doi

10.1002/jmv.24062

subject

Has Abstract

pub_date

2015-03-01 00:00:00

pages

485-97

issue

3

eissn

0146-6615

issn

1096-9071

journal_volume

87

pub_type

杂志文章
  • The aim of the measurement of Epstein-Barr virus DNA in hydroa vacciniforme and hypersensitivity to mosquito bites.

    abstract::Epstein-Barr virus (EBV) DNA load in the blood increases in posttransplant lymphoproliferative disorders and chronic active EBV infection. In this report, we analyzed the EBV DNA load in the peripheral blood mononuclear cells (PBMCs) and plasma of patients with hydroa vacciniforme (HV) and/or hypersensitivity to mosqu...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.25811

    authors: Miyake T,Iwatsuki K,Hirai Y,Yamamoto T,Hamada T,Fujii K,Imamura H,Morizane S

    更新日期:2020-04-07 00:00:00

  • Removal of parvovirus B19 from contaminated factor VIII during fractionation.

    abstract::A solution of pooled cryo-precipitate for preparing factor VIII (F VIII) by the solvent/detergent method was contaminated experimentally with parvovirus B19-positive plasma to evaluate virus reduction achieved by the final steps of the F VIII production process. Virus reduction was at least 2 logs of the total amount ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890350107

    authors: Schwarz TF,Roggendorf M,Hottenträger B,Stolz W,Schwinn H

    更新日期:1991-09-01 00:00:00

  • Second trimester fetal death caused by varicella-zoster virus infection.

    abstract::A 31-year-old woman contracted acute varicella at 13 weeks of gestation. Severe hydrops fetalis, hepatomegaly, and intrauterine fetal death were detected at 16 weeks of gestation by ultrasound examinations. An examination at autopsy, histopathology, and polymerase chain reaction (PCR) provided evidence of varicella-zo...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.23531

    authors: Tanimura K,Kojima N,Yamazaki T,Semba S,Yokozaki H,Yamada H

    更新日期:2013-05-01 00:00:00

  • Nitric oxide radical suppresses replication of wild-type dengue 2 viruses in vitro.

    abstract::Nitric oxide is well accepted as one of the defenses for inhibiting viral dissemination. Macrophages and cells in the macrophage lineage are professional nitric oxide producers which sub-serve as target for dengue virus. The interaction between nitric oxide and dengue virus in such target cell is unknown. In this repo...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20418

    authors: Charnsilpa W,Takhampunya R,Endy TP,Mammen MP Jr,Libraty DH,Ubol S

    更新日期:2005-09-01 00:00:00

  • Human immune response to Puumala virus glycoproteins and nucleocapsid protein expressed in mammalian cells.

    abstract::Puumala hantavirus (PUUV) glycoproteins G1 and G2 and nucleocapsid protein (N) were expressed in BHK-21 cells by transfection of a plasmid producing a recombinant alphavirus replicon. Coexpression of G1 and G2 from separate constructs seemed to be important for the optimal folding of the glycoproteins, as evaluated by...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:

    authors: Kallio-Kokko H,Leveelahti R,Brummer-Korvenkontio M,Lundkvist A,Vaheri A,Vapalahti O

    更新日期:2001-11-01 00:00:00

  • Association between detectable SARS-COV-2 RNA in anal swabs and disease severity in patients with coronavirus disease 2019.

    abstract:BACKGROUND:Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA was found in the intestines and feces, but its clinical significance is not completely clear. We aim to characterize the longitudinal test results of SARS-CoV-2 RNA in anal swabs and to explore the association with disease severity. METHODS:We...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.26307

    authors: Lin W,Xie Z,Li Y,Li L,Wen C,Cao Y,Chen X,Ou X,Hu F,Li F,Tang X,Cai W,Li L

    更新日期:2021-02-01 00:00:00

  • High frequency of lamivudine resistance mutations in Brazilian patients co-infected with HIV and hepatitis B.

    abstract::This study analyzed the genotype distribution and frequency of lamivudine (LAM) and tenofovir (TDF) resistance mutations in a group of patients co-infected with HIV and hepatitis B virus (HBV). A cross-sectional study of 847 patients with HIV was conducted. Patients provided blood samples for HBsAg detection. The load...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.21845

    authors: Mendes-Correa MC,Pinho JR,Locarnini S,Yuen L,Sitnik R,Santana RA,Gomes-Gouvêa MS,Leite OM,Martins LG,Silva MH,Gianini RJ,Uip DE

    更新日期:2010-09-01 00:00:00

  • Immune-specific interferon production by peripheral blood mononuclear leukocytes from patients with primary and recurrent oro-labial herpes simplex virus infections.

    abstract::Immune-specific IFN (IFN) is produced by the peripheral blood mononuclear leukocytes (PBML) of greater than 95% of HSV-seropositive humans with infrequent recurrences of herpes labialis [Green, Yeh, and Overall, 1981]. However, herpes virus-induced immune-specific IFN was produced by PBML from only 33 of 48 (68.8%) pe...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890160311

    authors: Green JA,Weiss PN,Yeh TJ,Spruance SL

    更新日期:1985-07-01 00:00:00

  • Hepatitis C infection, Cognition, and inflammation in an Egyptian sample.

    abstract::Chronic hepatitis C (HCV) infection is associated with cognitive impairments which might be mediated through a secondary inflammatory cascade. Egypt has an unusually high prevalence of HCV monoinfections and is an ideal site for the study of the isolated effects of HCV infection. Therefore, in a hospital-based cross-s...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.21879

    authors: Farag NH,Rashed HA,Hassan M,Darweesh A,Shehata M,Hassanein T,Mills PJ

    更新日期:2011-02-01 00:00:00

  • Detection of measles antigen in conjunctival epithelial lesions staining by lissamine green during measles virus infection.

    abstract::In a study in Kenya of corneal lesions occurring in children with measles virus infection, conjunctival lesions of a characteristic appearance were seen concomitant with the rash. The lesions became visible after staining by Lissamine green or Rose Bengal. In order to investigate whether these lesions were virus-induc...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890070210

    authors: Nommensen FE,Dekkers NW

    更新日期:1981-01-01 00:00:00

  • Analyzing the epidemiological outbreak of COVID-19: A visual exploratory data analysis approach.

    abstract::There is an obvious concern globally regarding the fact about the emerging coronavirus 2019 novel coronavirus (2019-nCoV) as a worldwide public health threat. As the outbreak of COVID-19 causes by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) progresses within China and beyond, rapidly available epi...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.25743

    authors: Dey SK,Rahman MM,Siddiqi UR,Howlader A

    更新日期:2020-06-01 00:00:00

  • Evidence for persistence of adenovirus in the tear film a decade following conjunctivitis.

    abstract::Chronic papillary conjunctivitis has been described following adenoviral conjunctivitis. It is unknown however, how long adenovirus is able to persist in the tear film and conjunctiva. To determine if adenovirus persists in the ocular surface following adenoviral conjunctivitis, 304 patients with a history of adenovir...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20440

    authors: Kaye SB,Lloyd M,Williams H,Yuen C,Scott JA,O'Donnell N,Batterbury M,Hiscott P,Hart CA

    更新日期:2005-10-01 00:00:00

  • Influence of age and CD4+ T cell counts on the prevalence of genital human papillomavirus infection among HIV-seropositive men who have sex with men in Taiwan.

    abstract::This study aimed to examine the baseline prevalence of genital human papillomavirus (HPV) infection among human immunodeficiency virus (HIV)-seropositive men who have sex with men in Taiwan and to determine the association of age and CD4+ T cell counts with HPV infection. In 2010, 305 men who have sex with men infecte...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.23413

    authors: Cheng SH,Chu FY,Lin YS,Hsueh YM

    更新日期:2012-12-01 00:00:00

  • Tocilizumab challenge: A series of cytokine storm therapy experiences in hospitalized COVID-19 pneumonia patients.

    abstract::To recognize the period of exaggerated cytokine response in patients with coronavirus disease 2019 (COVID-19) pneumonia, and to describe the clinical outcomes of using tocilizumab as a treatment option. The data of 12 adult COVID-19 pneumonia patients who were followed in the inpatient clinics of Biruni University Med...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.26111

    authors: Borku Uysal B,Ikitimur H,Yavuzer S,Ikitimur B,Uysal H,Islamoglu MS,Ozcan E,Aktepe E,Yavuzer H,Cengiz M

    更新日期:2020-11-01 00:00:00

  • Current seroepidemiology of hepatitis D virus infection among hepatitis B surface antigen carriers of general and high-risk populations in Taiwan.

    abstract::In order to assess the current seroepidemiology of hepatitis D virus (HDV) infection in Taiwan where hepatitis B virus (HBV) is hyperendemic, a total of 756 voluntary blood donors, 641 prostitutes, 1,014 patients with sexually transmitted diseases (STDs), and 628 drug abusers were studied. Radioimmunoassays were used ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890380205

    authors: Chen CJ,Tseng SF,Lu CF,Lin HC,You SL,Chen CS,Hwang SJ,Hsieh SF,Hsu ST

    更新日期:1992-10-01 00:00:00

  • Will the emergent SARS-CoV2 B.1.1.7 lineage affect molecular diagnosis of COVID19?

    abstract::As the coronavirus disease 2019 pandemic keep tackling global public health systems worldwide. The severe acute respiratory syndrome coronavirus 2 (SARS-CoV2) genome keeps mutating. In that regard, the recent emergence of the B.1.1.7 lineage in the UK has called the attention of global authorities. One point of concer...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.26823

    authors: Ramírez JD,Muñoz M,Patiño LH,Ballesteros N,Paniz-Mondolfi A

    更新日期:2021-01-28 00:00:00

  • Clustering patterns of type-type combination in multiple genotypes infections of human papillomavirus in cervical adenocarcinoma.

    abstract::Coinfections with multiple types of human papillomavirus (HPV) occur in cervical adenocarcinoma (ADC). However, it remains unclear the clustering patterns of multiple types in HPV coinfections and relevant factors in ADC. A total of 718 paraffin-embedded ADC specimens were collected in China and tested for HPV genotyp...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.25553

    authors: Dong L,Li T,Li L,Wang MZ,Wu Z,Cui J,Liu B,Zhang X,Qiao Y,Chen W

    更新日期:2019-11-01 00:00:00

  • Evolution rate of hepatitis delta virus RNA isolated in Taiwan.

    abstract::The complete RNA sequences of hepatitis delta viruses (HDV) isolated at 3 years apart from a chronic delta hepatitis patient in Taiwan were determined. The sequence analysis showed an overall evolution rate of 3.18 x 10(-3) substitutions/nucleotide/year. The evolution rates in different parts of HDV RNA varied. The hy...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890430414

    authors: Chao YC,Tang HS,Hsu CT

    更新日期:1994-08-01 00:00:00

  • Seroprevalence against Norwalk-like human caliciviruses in beijing, China.

    abstract::Serum specimens from 1,109 individuals at different ages in Beijing, China, were collected between April 1996 and March 1997 and tested for IgG antibodies against human caliciviruses using enzyme immune assays (EIAs). Baculovirus-expressed recombinant Norwalk virus (rNV) and Mexican virus (rMxV) capsid proteins were u...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/(sici)1096-9071(200001)60:1<97::aid-jmv16>

    authors: Jing Y,Qian Y,Huo Y,Wang LP,Jiang X

    更新日期:2000-01-01 00:00:00

  • Effect of antiviral substances on hepatitis A virus replication in vitro.

    abstract::The effect of protamine, atropine, selenocystamine, taxifolin, and catechin on the infectivity and antigenicity of the cell culture-adapted hepatitis A virus (HAV) strain CF 53 was studied. The toxicity on uninfected PLC/PRF/5 cells was examined for each antiviral compound by morphological and biochemical methods, in ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.1890220108

    authors: Biziagos E,Crance JM,Passagot J,Deloince R

    更新日期:1987-05-01 00:00:00

  • Eighteen-year follow-up cohort study on hepatitis B and C virus infections related long-term prognosis among hemodialysis patients in Hiroshima.

    abstract::This study aimed to investigate the prevalence trend of hepatitis B virus (HBV) and hepatitis C virus (HCV) infections and their genotype distribution among hemodialysis patients, determining their long-term prognosis and the risk factors to the mortality. This cohort study used both the medical data and the blood sam...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.26215

    authors: Ko K,Nagashima S,Yamamoto C,Takahashi K,Matsuo J,Ohisa M,Akita T,Matyakubov J,Mirzaev U,Katayama K,Masaki T,Tanaka J

    更新日期:2020-06-24 00:00:00

  • Favorable efficacy of long-term lamivudine therapy in patients with chronic hepatitis B: an 8-year follow-up study.

    abstract::The long-term efficacy of lamivudine therapy in patients with hepatitis B virus (HBV) infection is still not clear. In this study, 20 non-cirrhotic Japanese patients infected with HBV received lamivudine therapy for more than 1 year and were followed for a median period of 8.5 years (range, 6.7-8.7 years). The rates o...

    journal_title:Journal of medical virology

    pub_type: 临床试验,杂志文章

    doi:10.1002/jmv.20305

    authors: Akuta N,Suzuki F,Suzuki Y,Sezaki H,Hosaka T,Someya T,Kobayashi M,Saitoh S,Arase Y,Ikeda K,Kobayashi M,Kumada H

    更新日期:2005-04-01 00:00:00

  • Seroprevalence of human herpesvirus-8 in blood donors from different geographical regions of Argentina, Brazil, and Chile.

    abstract::Human herpesvirus-8 (HHV-8) causes Kaposi's sarcoma (KS) and lymphoproliferative disorders in both HIV-infected and uninfected patients. HHV-8 has a worldwide occurrence but infection rates vary according to a combination of geographic and behavioral risks. The main transmission route seems to be sexual, nevertheless,...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.20029

    authors: Pérez C,Tous M,Gallego S,Zala N,Rabinovich O,Garbiero S,Martínez MJ,Cunha AM,Camino S,Cámara A,Costa SC,Larrondo M,Francalancia V,Landreau F,Bartomioli MA

    更新日期:2004-04-01 00:00:00

  • Methylation of Epstein-Barr virus Rta promoter in EBV primary infection, reactivation and lymphoproliferation.

    abstract::During Epstein-Barr virus (EBV) latency, the EBV genome is largely silenced by methylation. This silencing is overturned during the switch to the lytic cycle. A key event is the production of the viral protein Zta which binds to three Zta-response elements (ZRE) from the Rta promoter (Rp), two of which (ZRE2 and ZRE3)...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.24524

    authors: Germi R,Guigue N,Lupo J,Semenova T,Grossi L,Vermeulen O,Epaulard O,de Fraipont F,Morand P

    更新日期:2016-10-01 00:00:00

  • Human herpesvirus 6 variant a infects human term syncytiotrophoblasts in vitro and induces replication of human immunodeficiency virus type 1 in dually infected cells.

    abstract::Human herpesvirus 6 (HHV-6) and human immunodeficiency virus type 1 (HIV-1) may interact during transplacental transmission of HIV-1. The placental syncytiotrophoblast layer serves as the first line of defense of the fetus against viruses. Patterns of replication of HHV-6 variant A (HHV-6A) and HIV-1 were analyzed in ...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.2194

    authors: Csoma E,Bácsi A,Liu X,Szabó J,Ebbesen P,Beck Z,Kónya J,Andirkó I,Nagy E,Tóth FD

    更新日期:2002-05-01 00:00:00

  • Serological examination of human herpesvirus 6 and 7 in patients with coronary artery disease.

    abstract::Fifty-three (96%) of 55 patients with coronary artery stenosis were positive for serum anti-HHV-6 IgG, and 50 (91%) of these patients had anti-HHV-7 IgG. The number of cases sero-positive for HHV-6 and -7 in the 54 age matched control volunteers was 52 (96%) and 53 (98%), respectively. No statistical difference in the...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.10134

    authors: Ihira M,Yoshikawa T,Ishii J,Nomura M,Hishida H,Ohashi M,Enomoto Y,Suga S,Iida K,Saito Y,Nishiyama Y,Asano Y

    更新日期:2002-08-01 00:00:00

  • IFNL3 (IL28B) and IFNL4 polymorphisms are associated with treatment response in Thai patients infected with HCV genotype 1, but not with genotypes 3 and 6.

    abstract::Recent studies have shown an association between single nucleotide polymorphisms (SNPs) in the interferon lambda-3 (IFNL3 or IL-28B) and IFNL4 genes and treatment response to hepatitis C virus genotype 1 (HCV-1) infection. The importance of these SNPs for HCV genotype 3 (HCV-3), and particularly HCV genotype 6 (HCV-6)...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.23957

    authors: Akkarathamrongsin S,Thong VD,Payungporn S,Poovorawan K,Prapunwattana P,Poovorawan Y,Tangkijvanich P

    更新日期:2014-09-01 00:00:00

  • Hemagglutinin-neuraminidase sequence and phylogenetic analyses of mumps virus isolates from a vaccinated population in Singapore.

    abstract::During 1999-2000, a sustained mumps outbreak in the highly vaccinated population in Singapore was attributed to vaccine failure associated with the Rubini vaccine strain. To explain this phenomenon, the complete nucleotide and amino acid sequences of the hemagglutinin-neuraminidase (HN) gene of eight mumps virus isola...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.10393

    authors: Lim CS,Chan KP,Goh KT,Chow VT

    更新日期:2003-06-01 00:00:00

  • Prevalence of human papillomaviruses in patients with head and neck squamous cell carcinoma in Lithuania and Belarus.

    abstract::Overall, head and neck sqamous cell carcinoma accounts for more than 550,000 cases annually worldwide. It is well known that human papillomavirus (HPV) is the main risk factor for cervical cancer development. As the incidence and the mortality of cervical cancer are closely related to the HPV prevalence, we hypothesiz...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.23750

    authors: Gudleviciene Z,Didziapetriene J,Mackeviciene I,Cicenas S,Smolyakova R,Zhukavetc A

    更新日期:2014-03-01 00:00:00

  • Sequence and structural analysis of the 5' noncoding region of hepatitis C virus in patients with chronic infection.

    abstract::Hepatitis C virus (HCV), exhibits considerable genetic diversity, but presents a relatively well conserved 5' noncoding region (5' NCR) among all genotypes. In this study, the structural features and translational efficiency of the HCV 5' NCR sequences were analyzed using the programs RNAfold, RNAshapes and RNApdist a...

    journal_title:Journal of medical virology

    pub_type: 杂志文章

    doi:10.1002/jmv.21507

    authors: Araújo FM,Machado-Lima A,Durham AM,Teixeira R,Oliveira G

    更新日期:2009-07-01 00:00:00