Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.

Abstract:

:Transcription factors (TFs) are the main players in transcriptional regulation in eukaryotes. However, it remains unclear what role TFs played in the origin of all of the different eukaryotic multicellular lineages. In this paper, we explore how the origin of TF repertoires shaped eukaryotic evolution and, in particular, their role into the emergence of multicellular lineages. We traced the origin and expansion of all known TFs through the eukaryotic tree of life, using the broadest possible taxon sampling and an updated phylogenetic background. Our results show that the most complex multicellular lineages (i.e., those with embryonic development, Metazoa and Embryophyta) have the most complex TF repertoires, and that these repertoires were assembled in a stepwise manner. We also show that a significant part of the metazoan and embryophyte TF toolkits evolved earlier, in their respective unicellular ancestors. To gain insights into the role of TFs in the development of both embryophytes and metazoans, we analyzed TF expression patterns throughout their ontogeny. The expression patterns observed in both groups recapitulate those of the whole transcriptome, but reveal some important differences. Our comparative genomics and expression data reshape our view on how TFs contributed to eukaryotic evolution and reveal the importance of TFs to the origins of multicellularity and embryonic development.

authors

de Mendoza A,Sebé-Pedrós A,Šestak MS,Matejcic M,Torruella G,Domazet-Loso T,Ruiz-Trillo I

doi

10.1073/pnas.1311818110

subject

Has Abstract

pub_date

2013-12-10 00:00:00

pages

E4858-66

issue

50

eissn

0027-8424

issn

1091-6490

pii

1311818110

journal_volume

110

pub_type

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