Control of somatic tissue differentiation by the long non-coding RNA TINCR.

Abstract:

:Several of the thousands of human long non-coding RNAs (lncRNAs) have been functionally characterized; however, potential roles for lncRNAs in somatic tissue differentiation remain poorly understood. Here we show that a 3.7-kilobase lncRNA, terminal differentiation-induced ncRNA (TINCR), controls human epidermal differentiation by a post-transcriptional mechanism. TINCR is required for high messenger RNA abundance of key differentiation genes, many of which are mutated in human skin diseases, including FLG, LOR, ALOXE3, ALOX12B, ABCA12, CASP14 and ELOVL3. TINCR-deficient epidermis lacked terminal differentiation ultrastructure, including keratohyalin granules and intact lamellar bodies. Genome-scale RNA interactome analysis revealed that TINCR interacts with a range of differentiation mRNAs. TINCR-mRNA interaction occurs through a 25-nucleotide 'TINCR box' motif that is strongly enriched in interacting mRNAs and required for TINCR binding. A high-throughput screen to analyse TINCR binding capacity to approximately 9,400 human recombinant proteins revealed direct binding of TINCR RNA to the staufen1 (STAU1) protein. STAU1-deficient tissue recapitulated the impaired differentiation seen with TINCR depletion. Loss of UPF1 and UPF2, both of which are required for STAU1-mediated RNA decay, however, did not have differentiation effects. Instead, the TINCR-STAU1 complex seems to mediate stabilization of differentiation mRNAs, such as KRT80. These data identify TINCR as a key lncRNA required for somatic tissue differentiation, which occurs through lncRNA binding to differentiation mRNAs to ensure their expression.

journal_name

Nature

journal_title

Nature

authors

Kretz M,Siprashvili Z,Chu C,Webster DE,Zehnder A,Qu K,Lee CS,Flockhart RJ,Groff AF,Chow J,Johnston D,Kim GE,Spitale RC,Flynn RA,Zheng GX,Aiyer S,Raj A,Rinn JL,Chang HY,Khavari PA

doi

10.1038/nature11661

subject

Has Abstract

pub_date

2013-01-10 00:00:00

pages

231-5

issue

7431

eissn

0028-0836

issn

1476-4687

pii

nature11661

journal_volume

493

pub_type

杂志文章

相关文献

NATURE文献大全
  • Patterns of de novo tandem repeat mutations and their role in autism.

    abstract::Autism spectrum disorder (ASD) is an early-onset developmental disorder characterized by deficits in communication and social interaction and restrictive or repetitive behaviours1,2. Family studies demonstrate that ASD has a substantial genetic basis with contributions both from inherited and de novo variants3,4. It h...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-03078-7

    authors: Mitra I,Huang B,Mousavi N,Ma N,Lamkin M,Yanicky R,Shleizer-Burko S,Lohmueller KE,Gymrek M

    更新日期:2021-01-01 00:00:00

  • Modelling the long QT syndrome with induced pluripotent stem cells.

    abstract::The ability to generate patient-specific human induced pluripotent stem cells (iPSCs) offers a new paradigm for modelling human disease and for individualizing drug testing. Congenital long QT syndrome (LQTS) is a familial arrhythmogenic syndrome characterized by abnormal ion channel function and sudden cardiac death....

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature09747

    authors: Itzhaki I,Maizels L,Huber I,Zwi-Dantsis L,Caspi O,Winterstern A,Feldman O,Gepstein A,Arbel G,Hammerman H,Boulos M,Gepstein L

    更新日期:2011-03-10 00:00:00

  • Endophilin I mediates synaptic vesicle formation by transfer of arachidonate to lysophosphatidic acid.

    abstract::Endophilin I is a presynaptic protein of unknown function that binds to dynamin, a GTPase that is implicated in endocytosis and recycling of synaptic vesicles. Here we show that endophilin I is essential for the formation of synaptic-like microvesicles (SLMVs) from the plasma membrane. Endophilin I exhibits lysophosph...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/43613

    authors: Schmidt A,Wolde M,Thiele C,Fest W,Kratzin H,Podtelejnikov AV,Witke W,Huttner WB,Söling HD

    更新日期:1999-09-09 00:00:00

  • Gene flow maintains a large genetic difference in clutch size at a small spatial scale.

    abstract::Understanding the capacity of natural populations to adapt to their local environment is a central topic in evolutionary biology. Phenotypic differences between populations may have a genetic basis, but showing that they reflect different adaptive optima requires the quantification of both gene flow and selection. Goo...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03083

    authors: Postma E,van Noordwijk AJ

    更新日期:2005-01-06 00:00:00

  • A gelsolin-like Ca2+-dependent actin-binding domain in villin.

    abstract::Villin is an actin-binding protein of relative molecular mass (Mr) 95,000 found in the core bundle of microfilaments in brush border microvilli from intestine. In physiological calcium concentrations (less than 1 microM), villin crosslinks actin filaments into bundles. However, in free calcium concentrations (greater ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/315248a0

    authors: Matsudaira P,Jakes R,Walker JE

    更新日期:1985-05-16 00:00:00

  • Bcl-2 promotes regeneration of severed axons in mammalian CNS.

    abstract::Most neurons of the mammalian central nervous system (CNS) lose the ability to regenerate severed axons in vivo after a certain point in development. At least part of this loss in regenerative potential is intrinsic to neurons. Although embryonic retinal ganglion cells (RGCs) can grow axons into tectum of any age, mos...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/385434a0

    authors: Chen DF,Schneider GE,Martinou JC,Tonegawa S

    更新日期:1997-01-30 00:00:00

  • Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner.

    abstract::RNA polymerase II (RNAP II) is responsible for transcribing all messenger RNAs in eukaryotic cells during a highly regulated process that is conserved from yeast to human, and that serves as a central control point for cellular function. Here we investigate the transcription dynamics of single RNAP II molecules from S...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature05701

    authors: Galburt EA,Grill SW,Wiedmann A,Lubkowska L,Choy J,Nogales E,Kashlev M,Bustamante C

    更新日期:2007-04-12 00:00:00

  • Thrombospondin binds falciparum malaria parasitized erythrocytes and may mediate cytoadherence.

    abstract::Plasmodium falciparum infected erythrocytes containing mature trophozoites and schizonts sequester along venular endothelium and are not in the peripheral circulation of patients with malaria. Knobs appear on infected erythrocytes and are the points of attachment to endothelium. Sequestration may protect the parasite ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/318064a0

    authors: Roberts DD,Sherwood JA,Spitalnik SL,Panton LJ,Howard RJ,Dixit VM,Frazier WA,Miller LH,Ginsburg V

    更新日期:1985-11-07 00:00:00

  • Host and viral traits predict zoonotic spillover from mammals.

    abstract::The majority of human emerging infectious diseases are zoonotic, with viruses that originate in wild mammals of particular concern (for example, HIV, Ebola and SARS). Understanding patterns of viral diversity in wildlife and determinants of successful cross-species transmission, or spillover, are therefore key goals f...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature22975

    authors: Olival KJ,Hosseini PR,Zambrana-Torrelio C,Ross N,Bogich TL,Daszak P

    更新日期:2017-06-29 00:00:00

  • Feeding behaviour: hydrothermal vent crabs feast on sea 'snow'.

    abstract::The crab Xenograpsus testudinatus lives at enormously high densities around the sulphur-rich hydrothermal vents found in shallow waters off Taiwan, even though this acidic environment is low in nutrients. Here we show that these crabs swarm out of their crevices at slack water and feed on the vast numbers of zooplankt...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/432969a

    authors: Jeng MS,Ng NK,Ng PK

    更新日期:2004-12-23 00:00:00

  • Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon.

    abstract::Males and females share many traits that have a common genetic basis; however, selection on these traits often differs between the sexes, leading to sexual conflict. Under such sexual antagonism, theory predicts the evolution of genetic architectures that resolve this sexual conflict. Yet, despite intense theoretical ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature16062

    authors: Barson NJ,Aykanat T,Hindar K,Baranski M,Bolstad GH,Fiske P,Jacq C,Jensen AJ,Johnston SE,Karlsson S,Kent M,Moen T,Niemelä E,Nome T,Næsje TF,Orell P,Romakkaniemi A,Sægrov H,Urdal K,Erkinaro J,Lien S,Primmer CR

    更新日期:2015-12-17 00:00:00

  • The association of GRB 060218 with a supernova and the evolution of the shock wave.

    abstract::Although the link between long gamma-ray bursts (GRBs) and supernovae has been established, hitherto there have been no observations of the beginning of a supernova explosion and its intimate link to a GRB. In particular, we do not know how the jet that defines a gamma-ray burst emerges from the star's surface, nor ho...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature04892

    authors: Campana S,Mangano V,Blustin AJ,Brown P,Burrows DN,Chincarini G,Cummings JR,Cusumano G,Della Valle M,Malesani D,Mészáros P,Nousek JA,Page M,Sakamoto T,Waxman E,Zhang B,Dai ZG,Gehrels N,Immler S,Marshall FE,Mason KO

    更新日期:2006-08-31 00:00:00

  • Medium-scale carbon nanotube thin-film integrated circuits on flexible plastic substrates.

    abstract::The ability to form integrated circuits on flexible sheets of plastic enables attributes (for example conformal and flexible formats and lightweight and shock resistant construction) in electronic devices that are difficult or impossible to achieve with technologies that use semiconductor wafers or glass plates as sub...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature07110

    authors: Cao Q,Kim HS,Pimparkar N,Kulkarni JP,Wang C,Shim M,Roy K,Alam MA,Rogers JA

    更新日期:2008-07-24 00:00:00

  • Conceptual model of the Bahamian Platform for the last 135 million years.

    abstract::The subsidence history of the Bahamian Platform points to a non-uniform rate of sea-floor spreading since the beginning of the Cretaceous. Lower Cretaceous rates of perhaps 5 cm/yr led to an active trench system at the boundary between the American and Caribbean lithosphere plates, and the rapid subsidence of the cont...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/2251226a0

    authors: Lynts GW

    更新日期:1970-03-28 00:00:00

  • Anthropogenic greenhouse gas contribution to flood risk in England and Wales in autumn 2000.

    abstract::Interest in attributing the risk of damaging weather-related events to anthropogenic climate change is increasing. Yet climate models used to study the attribution problem typically do not resolve the weather systems associated with damaging events such as the UK floods of October and November 2000. Occurring during t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature09762

    authors: Pall P,Aina T,Stone DA,Stott PA,Nozawa T,Hilberts AG,Lohmann D,Allen MR

    更新日期:2011-02-17 00:00:00

  • Ben Barres: neuroscience pioneer, gender champion.

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07109-2

    authors: Freeman M

    更新日期:2018-10-01 00:00:00

  • Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

    abstract::In the Methods section of this Article, 'greater than' should have been 'less than' in the sentence 'Putative regions of clustered rearrangements were identified as having an average inter-rearrangement distance that was at least 10 times greater than the whole-genome average for the individual sample. '. The Article ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41586-019-0883-2

    authors: Nik-Zainal S,Davies H,Staaf J,Ramakrishna M,Glodzik D,Zou X,Martincorena I,Alexandrov LB,Martin S,Wedge DC,Van Loo P,Ju YS,Smid M,Brinkman AB,Morganella S,Aure MR,Lingjærde OC,Langerød A,Ringnér M,Ahn SM,Boyault S

    更新日期:2019-02-01 00:00:00

  • The gait of Hipparion sp. from fossil footprints in Laetoli, Tanzania.

    abstract::Three Hipparion trails, two from adults and one from a juvenile dating from about 3.5 Myr ago, have now been found in Laetoli. Comparison of the Hipparion footprints with a variety of imprints made by domestic horses showed that the animals moved with a running walk over the soft and slippery soil of Laetoli: in the a...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/308179a0

    authors: Renders E

    更新日期:1984-03-08 00:00:00

  • Structural and functional characterization of the short acidic transcriptional activation region of yeast GCN4 protein.

    abstract::Derivatives of the yeast GCN4 transcription factor containing acidic regions of 35 to 40 amino acids fused directly to the DNA-binding domain are fully functional in vivo. High resolution deletion analysis and proteolytic mapping suggest that the activation region is a repeated structure composed of small units acting...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/333635a0

    authors: Hope IA,Mahadevan S,Struhl K

    更新日期:1988-06-16 00:00:00

  • Interactome map uncovers phosphatidylserine transport by oxysterol-binding proteins.

    abstract::The internal organization of eukaryotic cells into functionally specialized, membrane-delimited organelles of unique composition implies a need for active, regulated lipid transport. Phosphatidylserine (PS), for example, is synthesized in the endoplasmic reticulum and then preferentially associates--through mechanisms...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12430

    authors: Maeda K,Anand K,Chiapparino A,Kumar A,Poletto M,Kaksonen M,Gavin AC

    更新日期:2013-09-12 00:00:00

  • The antibody aducanumab reduces Aβ plaques in Alzheimer's disease.

    abstract::Alzheimer's disease (AD) is characterized by deposition of amyloid-β (Aβ) plaques and neurofibrillary tangles in the brain, accompanied by synaptic dysfunction and neurodegeneration. Antibody-based immunotherapy against Aβ to trigger its clearance or mitigate its neurotoxicity has so far been unsuccessful. Here we rep...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature19323

    authors: Sevigny J,Chiao P,Bussière T,Weinreb PH,Williams L,Maier M,Dunstan R,Salloway S,Chen T,Ling Y,O'Gorman J,Qian F,Arastu M,Li M,Chollate S,Brennan MS,Quintero-Monzon O,Scannevin RH,Arnold HM,Engber T,Rhodes K,Ferr

    更新日期:2016-09-01 00:00:00

  • A calcineurin-Hoxb13 axis regulates growth mode of mammalian cardiomyocytes.

    abstract::A major factor in the progression to heart failure in humans is the inability of the adult heart to repair itself after injury. We recently demonstrated that the early postnatal mammalian heart is capable of regeneration following injury through proliferation of preexisting cardiomyocytes1,2 and that Meis1, a three am...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2228-6

    authors: Nguyen NUN,Canseco DC,Xiao F,Nakada Y,Li S,Lam NT,Muralidhar SA,Savla JJ,Hill JA,Le V,Zidan KA,El-Feky HW,Wang Z,Ahmed MS,Hubbi ME,Menendez-Montes I,Moon J,Ali SR,Le V,Villalobos E,Mohamed MS,Elhelaly WM,Thet

    更新日期:2020-06-01 00:00:00

  • Piezo proteins are pore-forming subunits of mechanically activated channels.

    abstract::Mechanotransduction has an important role in physiology. Biological processes including sensing touch and sound waves require as-yet-unidentified cation channels that detect pressure. Mouse Piezo1 (MmPiezo1) and MmPiezo2 (also called Fam38a and Fam38b, respectively) induce mechanically activated cationic currents in c...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10812

    authors: Coste B,Xiao B,Santos JS,Syeda R,Grandl J,Spencer KS,Kim SE,Schmidt M,Mathur J,Dubin AE,Montal M,Patapoutian A

    更新日期:2012-02-19 00:00:00

  • Robustness in bacterial chemotaxis.

    abstract::Networks of interacting proteins orchestrate the responses of living cells to a variety of external stimuli, but how sensitive is the functioning of these protein networks to variations in their biochemical parameters? One possibility is that to achieve appropriate function, the reaction rate constants and enzyme conc...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/16483

    authors: Alon U,Surette MG,Barkai N,Leibler S

    更新日期:1999-01-14 00:00:00

  • Greater contribution to blood lead from water than from air.

    abstract::Concern about the levels of lead in blood is widespread. There is uncertainty, however, about the relative importance of the various environmental sources. Lead in petrol is widely assumed to be one of the most important sources and air and dust have been identified as the main routes to man. Water is regarded as an i...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/310138a0

    authors: Elwood PC,Gallacher JE,Phillips KM,Davies BE,Toothill C

    更新日期:1984-07-12 00:00:00

  • Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA.

    abstract::Tumour suppressor genes (TSGs) inhibiting normal cellular growth are frequently silenced epigenetically in cancer. DNA methylation is commonly associated with TSG silencing, yet mutations in the DNA methylation initiation and recognition machinery in carcinogenesis are unknown. An intriguing possible mechanism for gen...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature06468

    authors: Yu W,Gius D,Onyango P,Muldoon-Jacobs K,Karp J,Feinberg AP,Cui H

    更新日期:2008-01-10 00:00:00

  • Endogenous human microRNAs that suppress breast cancer metastasis.

    abstract::A search for general regulators of cancer metastasis has yielded a set of microRNAs for which expression is specifically lost as human breast cancer cells develop metastatic potential. Here we show that restoring the expression of these microRNAs in malignant cells suppresses lung and bone metastasis by human cancer c...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature06487

    authors: Tavazoie SF,Alarcón C,Oskarsson T,Padua D,Wang Q,Bos PD,Gerald WL,Massagué J

    更新日期:2008-01-10 00:00:00

  • Recognition of a lipid antigen by CD1-restricted alpha beta+ T cells.

    abstract::Major histocompatibility complex (MHC) class I and class II molecules bind immunogenic peptides and present them to lymphocytes bearing the alpha beta T-cell antigen receptor (TCR). An analogous antigen-presenting function also has been proposed for the non-MHC-encoded CD1 molecules, a family of non-polymorphic, beta ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/372691a0

    authors: Beckman EM,Porcelli SA,Morita CT,Behar SM,Furlong ST,Brenner MB

    更新日期:1994-12-15 00:00:00

  • A new neuronal marker identified by phosphorylcholine-binding myeloma proteins.

    abstract::The difficulty of working with the intact brain in vivo has led to the increasing use of nerve cell cultures in neurobiology. However, dissociated cells cannot be unambiguously identified by morphological criteria before the third week in culture, for it is not until then that the basic morphology and size of neurones...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/281376a0

    authors: Hooghe-Peters EL,Fowlkes BJ,Hooghe RJ

    更新日期:1979-10-04 00:00:00

  • Computed redox potentials and the design of bioreductive agents.

    abstract::Anti-cancer agents that have been made selective for tumour cells by exploiting the known differences in the availability of oxygen between normal and transformed cells are a promising development in cancer chemotherapy. We have recently suggested a new type of bioreductive activity which would depend on a two-electro...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/334080a0

    authors: Reynolds CA,King PM,Richards WG

    更新日期:1988-07-07 00:00:00