Similarities between protein folding and granular jamming.

Abstract:

:Grains and glasses, widely different materials, arrest their motions upon decreasing temperature and external load, respectively, in common ways, leading to a universal jamming phase diagram conjecture. However, unified theories are lacking, mainly because of the disparate nature of the particle interactions. Here we demonstrate that folded proteins exhibit signatures common to both glassiness and jamming by using temperature- and force-unfolding molecular dynamics simulations. Upon folding, proteins develop a peak in the interatomic force distributions that falls on a universal curve with experimentally measured forces on jammed grains and droplets. Dynamical signatures are found as a dramatic slowdown of stress relaxation upon folding. Together with granular similarities, folding is tied not just to the jamming transition, but a more nuanced picture of anisotropy, preparation protocol and internal interactions emerges. Results have implications for designing stable polymers and can open avenues to link protein folding to jamming theory.

journal_name

Nat Commun

journal_title

Nature communications

authors

Jose PP,Andricioaei I

doi

10.1038/ncomms2177

subject

Has Abstract

pub_date

2012-01-01 00:00:00

pages

1161

issn

2041-1723

pii

ncomms2177

journal_volume

3

pub_type

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