Genome sequence of Reyranella massiliensis, a bacterium associated with amoebae.

Abstract:

:Reyranella massiliensis is an Alphaproteobacterium member of the class Rhodospirillaceae, growing in amoebae. We sequenced the genome of type strain 521(T). It is composed of a 5,792,218-bp chromosome and encodes 5,675 protein-coding genes and 53 RNA genes, including 3 rRNA genes.

journal_name

J Bacteriol

journal_title

Journal of bacteriology

authors

Pagnier I,Croce O,Robert C,Raoult D,La Scola B

doi

10.1128/JB.01260-12

subject

Has Abstract

pub_date

2012-10-01 00:00:00

pages

5698

issue

20

eissn

0021-9193

issn

1098-5530

pii

194/20/5698

journal_volume

194

pub_type

杂志文章
  • Quantitative assessment of oxygen availability: perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli.

    abstract::Despite a large number of studies on the role of oxygen in cellular processes, there is no consensus as to how oxygen availability to the cell should be defined, let alone how it should be quantified. Here, a quantitative definition for oxygen availability (perceived aerobiosis) is presented; the definition is based o...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.5.1402-1406.2002

    authors: Alexeeva S,Hellingwerf KJ,Teixeira de Mattos MJ

    更新日期:2002-03-01 00:00:00

  • Overproduction of DnaE protein (alpha subunit of DNA polymerase III) restores viability in a conditionally inviable Escherichia coli strain deficient in DNA polymerase I.

    abstract::A polA12 recA718 double mutant of Escherichia coli, in which DNA polymerase I is temperature sensitive, was unable to maintain normal DNA synthesis or to form colonies on rich media at 42 degrees C. Overproduction of DnaE protein, the polymerizing alpha subunit of DNA polymerase III, restored bacterial DNA replication...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.174.12.4166-4168.1992

    authors: Witkin EM,Roegner-Maniscalco V

    更新日期:1992-06-01 00:00:00

  • Abnormal septation and inhibition of sporulation by accumulation of L- -glycerophosphate in Bacillus subtilis mutants.

    abstract::Accumulation of l-alpha-glycerophosphate, in cells of Bacillus subtilis mutants lacking the nicotinamide adenine dinucleotide-independent glycerophosphate dehydrogenase activity, suppresses both growth and sporulation. After growth has stopped, the cells slowly develop one and later more asymmetric septa that are thic...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.113.2.1034-1045.1973

    authors: O YK,Freese EB,Freese E

    更新日期:1973-02-01 00:00:00

  • Binding of Spo0A stimulates spoIIG promoter activity in Bacillus subtilis.

    abstract::The spoIIG promoter is used by RNA polymerase containing sigma A (E sigma A), the primary form of RNA polymerase found in vegetative cells in Bacillus subtilis. However, the spoIIG promoter is active only after the onset of sporulation. Activation of the spoIIG promoter requires the product of the spo0A gene (Spo0A). ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.174.5.1448-1453.1992

    authors: Satola SW,Baldus JM,Moran CP Jr

    更新日期:1992-03-01 00:00:00

  • ISOLOGOUS INTERFERENCE WITH ULTRAVIOLET AND X-RAY IRRADIATED BACTERIOPHAGE T2.

    abstract::Levy, Stuart B. (Institut du Radium, Paris, France). Isologous interference with ultraviolet and X-ray irradiated bacteriophage T(2). J. Bacteriol. 87:1330-1338. 1964.-Qualitative and quantitative analysis of the interference capacity of an irradiated T(2) bacteriophage was made with ultraviolet and X-ray irradiation....

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.87.6.1330-1338.1964

    authors: LEVY SB

    更新日期:1964-06-01 00:00:00

  • Thermoregulation of the pap operon: evidence for the involvement of RimJ, the N-terminal acetylase of ribosomal protein S5.

    abstract::Our previous work showed that pap pilin gene transcription is subject to a thermoregulatory control mechanism under which pap pilin is not transcribed at a low temperature (23 degrees C) (L. B. Blyn, B. A. Braaten, C. A. White-Ziegler, D. H. Rolfson, and D. A. Low, EMBO J. 8:613-620, 1989). In order to isolate genes i...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.174.21.7003-7012.1992

    authors: White-Ziegler CA,Low DA

    更新日期:1992-11-01 00:00:00

  • Genetic circularity of the Pseudomonas aeruginosa PAO chromosome.

    abstract::Genetic circularity of the Pseudomonas aeruginosa PAO chromosome was demonstrated by a series of two- and three-factor crosses and double-selection experiments with Cma plasmids FP2, FP5, FP110, and R68.45. A range of additional markers, including catabolic markers, were located on the chromosome map. Plasmid FP2, kno...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.145.1.145-155.1981

    authors: Royle PL,Matsumoto H,Holloway BW

    更新日期:1981-01-01 00:00:00

  • The All-Alpha Domains of Coupling Proteins from the Agrobacterium tumefaciens VirB/VirD4 and Enterococcus faecalis pCF10-Encoded Type IV Secretion Systems Confer Specificity to Binding of Cognate DNA Substrates.

    abstract:UNLABELLED:Bacterial type IV coupling proteins (T4CPs) bind and mediate the delivery of DNA substrates through associated type IV secretion systems (T4SSs). T4CPs consist of a transmembrane domain, a conserved nucleotide-binding domain (NBD), and a sequence-variable helical bundle called the all-alpha domain (AAD). In ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00189-15

    authors: Whitaker N,Chen Y,Jakubowski SJ,Sarkar MK,Li F,Christie PJ

    更新日期:2015-07-01 00:00:00

  • Binding specificity of the periplasmic oligopeptide-binding protein from Escherichia coli.

    abstract::The structural properties required for the binding of peptide substrates to the Escherichia coli periplasmic protein involved in oligopeptide transport were surveyed by measuring the ability of different peptides to compete for binding in an equilibrium dialysis assay with the tripeptide Ala-Phe-[3H]Gly. The protein s...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.168.2.775-779.1986

    authors: Guyer CA,Morgan DG,Staros JV

    更新日期:1986-11-01 00:00:00

  • Amplification and deletion of the amyE+-tmrB+ gene region in a Bacillus subtilis recombinant-phage genome by the tmrA7 mutation.

    abstract::A 22.4-kilobase DNA fragment containing the tmrA7-amyR2-amyE+-tmrB+-aroI+ region of the Bacillus subtilis N7 chromosomal DNA was cloned into a recombinant B. subtilis bacteriophage, p11-AA248. The amyE+-tmrB+ gene region, approximately 12.6 kilobases, in the phage genome was amplified in a tunicamycin-resistant (Tmr) ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.165.2.549-556.1986

    authors: Furusato T,Takano J,Yamane K,Hashiguchi K,Tanimoto A,Mori M,Yoda K,Yamasaki M,Tamura G

    更新日期:1986-02-01 00:00:00

  • In vivo sensitivity of blue-light-dependent signaling mediated by AppA/PpsR or PrrB/PrrA in Rhodobacter sphaeroides.

    abstract::Formation of photosynthesis complexes in Rhodobacter sphaeroides is regulated in a redox- and light-dependent manner by the AppA/PpsR and PrrB/PrrA systems. While on the one hand, blue light is sensed by the flavin adenine dinucleotide-binding BLUF domain of AppA, on the other, light is absorbed by bacteriochlorophyll...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00262-09

    authors: Metz S,Jäger A,Klug G

    更新日期:2009-07-01 00:00:00

  • Conceptual Model of Biofilm Antibiotic Tolerance That Integrates Phenomena of Diffusion, Metabolism, Gene Expression, and Physiology.

    abstract::Transcriptomic, metabolomic, physiological, and computational modeling approaches were integrated to gain insight into the mechanisms of antibiotic tolerance in an in vitro biofilm system. Pseudomonas aeruginosa biofilms were grown in drip flow reactors on a medium composed to mimic the exudate from a chronic wound. A...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00307-19

    authors: Stewart PS,White B,Boegli L,Hamerly T,Williamson KS,Franklin MJ,Bothner B,James GA,Fisher S,Vital-Lopez FG,Wallqvist A

    更新日期:2019-10-21 00:00:00

  • Purification and characterization of acid phosphatase V from Aspergillus nidulans.

    abstract::Acid phosphatase V of Aspergillus nidulans was purified by ammonium sulfate precipitation, gel filtration, and ion-exchange chromatography. The enzyme demonstrated a charge microheterogeneity on starch and acrylamide gel electrophoresis, but proved to be homogeneous on ultracentrifugation and gel filtration. Phosphata...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.110.1.246-255.1972

    authors: Harsanyi Z,Dorn GL

    更新日期:1972-04-01 00:00:00

  • In vitro construction of gshB::kan in Escherichia coli and use of gshB::kan in mapping the gshB locus.

    abstract::The Escherichia coli structural gene for glutathione synthetase, gshB, was cloned into pBR322. Plasmids containing gshB were able to complement the glutathione requirement of a trxA gshB double mutant, and cells containing the plasmids were found to have elevated levels of glutathione synthetase. A mutant gshB allele ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.171.9.5218-5221.1989

    authors: Daws T,Lim CJ,Fuchs JA

    更新日期:1989-09-01 00:00:00

  • Partial characterization of lipid A of intraperiplasmically grown Bdellovibrio bacteriovorus.

    abstract::The lipid A components of substrate cell origin incorporated by Bdellovibrio bacteriovorus during intraperiplasmic growth (D. R. Nelson and S. C. Rittenberg, J. Bacteriol. 147:860-868, 1981) were shown to be integrated into its lipopolysaccharide structure. Lipid A isolated from bdellovibrios grown on Escherichia coli...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.147.3.869-874.1981

    authors: Nelson DR,Rittenberg SC

    更新日期:1981-09-01 00:00:00

  • Mitochondrial translation products during release from glucose repression in Saccharomyces cerevisiae.

    abstract::Mitochondrial protein synthesis was studied during release from glucose repression in Saccharomyces cerevisiae cells bearing different mitochondrial genomes. The increase in the rate of the synthesis of mitochondrial translation products was analyzed during respiratory induction. Different kinetic patterns were found ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.153.3.1125-1132.1983

    authors: Falcone C,Agostinelli M,Frontali L

    更新日期:1983-03-01 00:00:00

  • Francisella novicida CRISPR-Cas Systems Can Functionally Complement Each Other in DNA Defense while Providing Target Flexibility.

    abstract::CRISPR-Cas systems are prokaryotic adaptive immune systems that facilitate protection of bacteria and archaea against infection by external mobile genetic elements. The model pathogen Francisella novicida encodes a CRISPR-Cas12a (FnoCas12a) system and a CRISPR-Cas9 (FnoCas9) system, the latter of which has an addition...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00670-19

    authors: Ratner HK,Weiss DS

    更新日期:2020-05-27 00:00:00

  • Role of cell wall in Saccharomyces cerevisiae mutants resistant to Hg2+.

    abstract::Hg2+-resistant mutants were isolated from Saccharomyces cerevisiae. Although they were very much like the parental strains in terms of colony-forming ability, they grew faster than the parental strains in the presence of sublethal doses of Hg2+. The Hg2+-resistant mutations were dominant. They were centromere linked a...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.170.12.5877-5882.1988

    authors: Ono B,Ohue H,Ishihara F

    更新日期:1988-12-01 00:00:00

  • The tyrT locus of Escherichia coli B.

    abstract::The tyrT (tRNA(1TYr)) locus of Escherichia coli B differs structurally from that of K-12 strains by the absence of 2 of 3.14 terminal repeat sequences. ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.178.8.2469-2470.1996

    authors: Timms AR,Bridges BA

    更新日期:1996-04-01 00:00:00

  • Evidence that TP_0144 of Treponema pallidum is a thiamine-binding protein.

    abstract::Thiamine pyrophosphate (TPP), the biologically active form of thiamine (also known as vitamin B1), is an essential cofactor for several important enzymes involved in carbohydrate metabolism, and therefore, it is required for all living organisms. We recently found that a thiamine-binding protein (TDE_0143) is essentia...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.02472-14

    authors: Bian J,Tu Y,Wang SM,Wang XY,Li C

    更新日期:2015-04-01 00:00:00

  • Properties of 2-oxoglutarate:ferredoxin oxidoreductase from Thauera aromatica and its role in enzymatic reduction of the aromatic ring.

    abstract::Benzoyl coenzyme A (benzoyl-CoA) reductase is a key enzyme in the anaerobic metabolism of aromatic compounds catalyzing the ATP-driven reductive dearomatization of benzoyl-CoA. The enzyme from Thauera aromatica uses a reduced 2[4Fe-4S] ferredoxin as electron donor. In this work, we identified 2-oxoglutarate:ferredoxin...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.14.3975-3983.2002

    authors: Dörner E,Boll M

    更新日期:2002-07-01 00:00:00

  • Penicillin-binding proteins of bdellovibrios.

    abstract::We examined the predacious gram-negative bacterium Bdellovibrio bacteriovorous 109J and free-living strains 109J-A1 and 109J-KA1 derived therefrom for penicillin-binding proteins (PBPs). We compared their PBPs with those of the host bacterium, Escherichia coli, and with those of a facultatively predacious bdellovibrio...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.170.8.3750-3751.1988

    authors: Park JT,Mahadevan S

    更新日期:1988-08-01 00:00:00

  • Physical and functional characteristics of R-factor deoxyribonucleic acid segregated into Escherichia coli minicells.

    abstract::Both fi(+) and fi(-) type R factors function as intact replicative units when segregated into Escherichia coli minicells. Hybridization studies demonstrate that at least 95% of the deoxyribonucleic acid (DNA) in R(+) minicells is episomal in origin. About half of the DNA can be extracted in a closed circular form and ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.108.1.300-308.1971

    authors: Levy SB

    更新日期:1971-10-01 00:00:00

  • Conservation of plasmid maintenance functions between linear and circular plasmids in Borrelia burgdorferi.

    abstract::The Lyme disease agent Borrelia burgdorferi maintains both linear and circular plasmids that appear to be essential for mammalian infection. Recent studies have characterized the circular plasmid regions that confer autonomous replication, but the genetic elements necessary for linear plasmid maintenance have not been...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.185.10.3202-3209.2003

    authors: Stewart PE,Chaconas G,Rosa P

    更新日期:2003-05-01 00:00:00

  • Proteolytic cleavage of the FlhB homologue YscU of Yersinia pseudotuberculosis is essential for bacterial survival but not for type III secretion.

    abstract::Pathogenic Yersinia species employ a type III secretion system (TTSS) to target antihost factors, Yop proteins, into eukaryotic cells. The secretion machinery is constituted of ca. 20 Ysc proteins, nine of which show significant homology to components of the flagellar TTSS. A key event in flagellar assembly is the swi...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.16.4500-4509.2002

    authors: Lavander M,Sundberg L,Edqvist PJ,Lloyd SA,Wolf-Watz H,Forsberg A

    更新日期:2002-08-01 00:00:00

  • Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process.

    abstract::The aminophenol (AP) catabolic operon in Pseudomonas putida HS12 mineralizing nitrobenzene was found to contain all the enzymes responsible for the conversion of AP to pyruvate and acetyl coenzyme A via extradiol meta cleavage of 2-aminophenol. The sequence and functional analyses of the corresponding genes of the ope...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.183.17.5074-5081.2001

    authors: Park HS,Kim HS

    更新日期:2001-09-01 00:00:00

  • The acrAB homolog of Haemophilus influenzae codes for a functional multidrug efflux pump.

    abstract::Disruption of gene HI0894 or HI0895 in Haemophilus influenzae Rd, homologs of Escherichia coli acrAB multidrug efflux genes, caused hypersusceptibility to erythromycin, rifampin, novobiocin, and dyes such as ethidium bromide and crystal violet and increased accumulation of radioactive erythromycin, showing that these ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.179.21.6855-6857.1997

    authors: Sánchez L,Pan W,Viñas M,Nikaido H

    更新日期:1997-11-01 00:00:00

  • Enterotoxin B synthesis by replicating and nonreplicating cells of Staphylococcus aureus.

    abstract::Although 95% of the enterotoxin B produced by Staphylococcus aureus appears during the latter part of the exponential phase of growth, growth per se is not necessary for toxin synthesis. A procedure is described whereby a concentrated suspension (at least 6 x 10(10) cells per ml) of a 16-hr culture of S. aureus was fo...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.97.2.506-512.1969

    authors: Markus Z,Silverman GJ

    更新日期:1969-02-01 00:00:00

  • Isolation of F' plasmids carrying a portion of the Salmonella typhimurium histidine transport operon.

    abstract::The transposable drug resistance element Tn10 was employed as a region of homology to direct the insertion of Tn10-containing derivatives of F'ts114 lac into the chromosome of a Salmonella typhimurium strain that carries a Tn10 insertion in the histidine transport operon. Based on the direction of transfer of the resu...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.157.3.697-702.1984

    authors: Lawton KG,Taber HW

    更新日期:1984-03-01 00:00:00

  • A functional leuABCD operon is required for leucine synthesis by the tyrosine-repressible transaminase in Escherichia coli K-12.

    abstract::In Escherichia coli K-12, two enzymes, encoded by ilvE and tyrB, catalyze the amination of 2-ketoisocaproate (2-KIC) to form leucine. Although leucine-requiring derivatives of an ilvE strain that are unable to grow on 2-KIC were expected to have mutations only in tyrB, mapping studies showed that one such mutation was...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.173.12.3864-3871.1991

    authors: Vartak NB,Liu L,Wang BM,Berg CM

    更新日期:1991-06-01 00:00:00