Small RNAs derived from longer non-coding RNAs.

Abstract:

:Posttranscriptional gene regulation by small RNAs and its crucial impact on development, apoptosis, stem cell self-renewal and differentiation gained tremendous scientific attention since the discovery of RNA interference (RNAi) and microRNAs (miRNAs). However, in the last few years, many more examples for regulatory small RNAs were discovered, some of them even with miRNA-like functions. Even though these small RNA molecules were previously thought to be mere artifacts accumulating during the preparation of RNA libraries, advances in sequencing technology revealed that small RNAs derive from hairpin-fold RNA structures, for example. Mirtrons, short hairpin RNAs or small RNAs that are processed from longer non-coding RNAs such as tRNAs or snoRNAs have been found recently and some of them might be involved in the regulation of gene expression in different organisms. Furthermore, small RNAs originating from transposable elements, heterochromatic regions or convergent transcription units forming endogenous short interfering RNAs (endo-siRNAs) are the somatic equivalents of the germline-specific Piwi-interacting RNAs (piRNAs) in mediating transposon silencing. This review will focus on several recent findings that have added new aspects to small RNA-guided gene silencing.

journal_name

Biochimie

journal_title

Biochimie

authors

Röther S,Meister G

doi

10.1016/j.biochi.2011.07.032

subject

Has Abstract

pub_date

2011-11-01 00:00:00

pages

1905-15

issue

11

eissn

0300-9084

issn

1638-6183

pii

S0300-9084(11)00290-2

journal_volume

93

pub_type

杂志文章,评审
  • Lactic acid bacteria: model systems for in vivo studies of sugar transport and metabolism in gram-positive organisms.

    abstract::Lactic acid bacteria provide a model system for the in vivo study of mechanisms pertaining to the regulation of sugar transport and metabolism by microorganisms. Recent studies with resting and growing cells of the homofermentative Streptococci and Lactobacilli have yielded evidence for hitherto unsuspected regulatory...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(88)90205-2

    authors: Thompson J

    更新日期:1988-03-01 00:00:00

  • Blocking αvβ3 integrin by a recombinant RGD disintegrin impairs VEGF signaling in endothelial cells.

    abstract::Vascular endothelial growth factor (VEGF) and αvβ3 integrin are key molecules that actively participate in tumor angiogenesis and metastasis. Some integrin-blocking molecules are currently under clinical trials for cancer and metastasis treatment. However, the mechanism of action of such inhibitors is not completely u...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.04.020

    authors: Montenegro CF,Salla-Pontes CL,Ribeiro JU,Machado AZ,Ramos RF,Figueiredo CC,Morandi V,Selistre-de-Araujo HS

    更新日期:2012-08-01 00:00:00

  • Polyphosphate as a source of phosphoryl group in protein modification in the archaebacterium Sulfolobus acidocaldarius.

    abstract::The incubation of polyphosphates with the ribosomal fraction of Sulfolobus acidocaldarius leads to the covalent attachment of phosphate to threonine residue(s) of a single 40,000 Mr protein. The hydrolysis kinetics of this protein showed that polyphosphate might be the modifying group. The reaction requires 2 mM Mn2+ ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(89)90115-6

    authors: Skorko R

    更新日期:1989-09-01 00:00:00

  • Low enantioselectivities of human deoxycytidine kinase and human deoxyguanosine kinase with respect to 2'-deoxyadenosine, 2'-deoxyguanosine and their analogs.

    abstract::The antiviral activity of L-nucleoside analogs depends in part on the enantioselectivity of nucleoside kinases which catalyse their monophosphorylation. The substrate properties of human recombinant deoxycytidine kinase (dCK) and human recombinant deoxyguanosine kinase (dGK) with respect to L-adenosine and L-guanosine...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(99)00331-4

    authors: Gaubert G,Gosselin G,Boudou V,Imbach JL,Eriksson S,Maury G

    更新日期:1999-11-01 00:00:00

  • Attenuated mitochondrial NADP+-dependent isocitrate dehydrogenase activity induces apoptosis and hypertrophy of H9c2 cardiomyocytes.

    abstract::Oxidative stress, characterized by the accumulation of reactive oxygen species (ROS), is known to have numerous detrimental effects on the myocardium such as the induction of apoptotic cell death, hypertrophy, fibrosis, dysfunction, and dilatation. Over the past several years, we have shown that mitochondrial NADP(+)-...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.11.016

    authors: Lee JH,Park JW

    更新日期:2014-04-01 00:00:00

  • pH dependent Ni(II) binding and aggregation of Escherichia coli and Helicobacter pylori NikR.

    abstract::NikR proteins are bacterial metallo-regulatory transcription factors that control the expression of the nickel uptake system and/or nickel containing enzymes such as urease, and are involved in the acid stress response. Here, a comparative study is reported on NikR from Helicobacter pylori (HpNikR) and Escherichia col...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2006.07.016

    authors: Fauquant C,Diederix RE,Rodrigue A,Dian C,Kapp U,Terradot L,Mandrand-Berthelot MA,Michaud-Soret I

    更新日期:2006-11-01 00:00:00

  • What distinguishes an esterase from a lipase: a novel structural approach.

    abstract::Esterases and lipases both hydrolyse ester bonds. Whereas the lipases display high activity towards the aggregated state of its substrate, the esterases typically show highest activity towards the soluble state of its substrate. We have compared the amino acid sequence, the 3D-structure as well as the pH-dependent ele...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(00)01188-3

    authors: Fojan P,Jonson PH,Petersen MT,Petersen SB

    更新日期:2000-11-01 00:00:00

  • UV induction of LexA independent proteins which could be involved in SOS repair.

    abstract::The SOS response is induced in E coli following treatments that interfere with DNA replication. The response is under the control of the recA and the lexA genes. Strains defective in LexA repressor constitutively express SOS proteins. However, SOS repair does not reach its maximum level in these strains. Instead, an a...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(91)90107-c

    authors: Lesca C,Petit C,Defais M

    更新日期:1991-04-01 00:00:00

  • Primer on genes encoding enzymes in sialic acid metabolism in mammals.

    abstract::Sialic acid, a nine-carbon sugar acid usually is present in the non-reducing terminal position of free oligosaccharides and glycoconjugates. Sialylated conjugates in mammals perform important roles in cellular recognition, signaling, host-pathogen interaction and neuronal development. Metabolism of sialylated conjugat...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2011.06.002

    authors: Wickramasinghe S,Medrano JF

    更新日期:2011-10-01 00:00:00

  • Functional role of annexins in zebrafish caudal fin regeneration - A gene knockdown approach in regenerating tissue.

    abstract::Regeneration is an adaptive phenomenon with wide biological implications spread heterogeneously in almost all the organism including human beings. The ability of regeneration varies from species to species for its complexity. Epimorphic regeneration of zebrafish caudal fin tissue is the most widely studied regeneratio...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.05.014

    authors: Quoseena M,Vuppaladadium S,Hussain S,Banu S,Bharathi S,Idris MM

    更新日期:2020-08-01 00:00:00

  • Expression of mitochondrial genes and of the transcription factors involved in the biogenesis of mitochondria Tfam, NRF-1 and NRF-2, in rat liver, testis and brain.

    abstract::Mitochondrial function requires genes encoded in both mitochondrial and nuclear genomes. Tfam, the activator of mammalian mitochondrial transcription, is encoded in the nucleus and its expression has been shown in in vitro studies to be controlled by nuclear respiratory factors NRF-1 and NRF-2. In order to understand ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(99)00223-0

    authors: Escrivá H,Rodríguez-Peña A,Vallejo CG

    更新日期:1999-10-01 00:00:00

  • Techniques for the removal of marker genes from transgenic plants.

    abstract::The presence of marker genes encoding antibiotic or herbicide resistances in genetically modified plants poses a number of problems. Various techniques are under development for the removal of unwanted marker genes, while leaving required transgenes in place. The aim of this brief review is to describe the principal m...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(02)00021-4

    authors: Scutt CP,Zubko E,Meyer P

    更新日期:2002-11-01 00:00:00

  • Antagonistic RNA aptamer specific to a heterodimeric form of human interleukin-17A/F.

    abstract::Interleukin-17 (IL-17) is a pro-inflammatory cytokine produced primarily by a subset of CD4(+)T cells, called Th17 cells, that is involved in host defense, inflammation and autoimmune disorders. The two most structurally related IL-17 family members, IL-17A and IL-17F, form homodimeric (IL-17A/A, IL-17F/F) and heterod...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2011.04.003

    authors: Adachi H,Ishiguro A,Hamada M,Sakota E,Asai K,Nakamura Y

    更新日期:2011-07-01 00:00:00

  • Disintegrins of Crotalus simus tzabcan venom: Isolation, characterization and evaluation of the cytotoxic and anti-adhesion activities of tzabcanin, a new RGD disintegrin.

    abstract::Disintegrins are small non-enzymatic proteins common in the venoms of many viperid snakes. These proteins have received significant attention due to their ability to inhibit platelet aggregation and cell adhesion, making them model compounds in drug development and design investigations. The present study used a combi...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.07.005

    authors: Saviola AJ,Modahl CM,Mackessy SP

    更新日期:2015-09-01 00:00:00

  • One-step purification and properties of catalase from leaves of Zantedeschia aethiopica.

    abstract::Catalase (E.C 1.11.1.6) was purified from leaves of Zandedeschia aethiopica to apparent homogeneity by a one-step hydrophobic interaction chromatography on a phenyl Sepharose CL-4B column. The purified enzyme preparation was obtained with a final recovery of enzyme activity of about 61% and a specific activity of 146 ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(88)90035-1

    authors: Trindade H,Karmali A,Pais MS

    更新日期:1988-12-01 00:00:00

  • Reciprocal effects of 2-fluoro-2-deoxy-D-glucose and glucose on their metabolism in Saccharomyces cerevisiae studied by multi-nuclear NMR spectroscopy.

    abstract::The effects of various concentrations of 2-fluoro-2-deoxy-D-glucose (FDG) on the aerobic metabolism of glucose and the reciprocal effect of glucose on the metabolism of FDG in glucose-grown repressed Saccharomyces cerevisiae cells were studied at 30 degrees C in a standard pyrophosphate medium containing 5 x 10(7) cel...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(96)88129-6

    authors: Tran-Dinh S,Courtois A,Wietzerbin J,Bouet F,Herve M

    更新日期:1995-01-01 00:00:00

  • Neuronal sphingolipidoses: Membrane lipids and sphingolipid activator proteins regulate lysosomal sphingolipid catabolism.

    abstract::Glycosphingolipids and sphingolipids of cellular plasma membranes (PMs) reach luminal intra-lysosomal vesicles (LVs) for degradation mainly by pathways of endocytosis. After a sorting and maturation process (e.g. degradation of sphingomyelin (SM) and secretion of cholesterol), sphingolipids of the LVs are digested by ...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2016.05.004

    authors: Sandhoff K

    更新日期:2016-11-01 00:00:00

  • Dual hydrolytic role for Pb(II) ions.

    abstract::RNA phosphodiester bonds can be cleaved by metal ions, of which Pb2+ is one of the most effective. It can cleave both generally and site-specifically, depending on the substrate and the conditions. In addition, metal ions are also known to cleave ester bonds between amino acid and the 3'-end of transfer RNA. Here we r...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(94)90058-2

    authors: Otzen DE,Barciszewski J,Clark BF

    更新日期:1994-01-01 00:00:00

  • Genetic regulation of mouse glycosylphosphatidylinositol-phospholipase D.

    abstract::Glycosylphosphatidylinositol phospholipase D (GPI-PLD) has been proposed to be responsible for cleaving membrane-associated glycosylphosphatidyl inositol (GPI) molecules to generate inositol phosphoglycan (IPGs), which have growth factor-mimetic properties. We have cloned the mouse liver GPI-PLD cDNA, which has a sequ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2004.04.003

    authors: Flores-Borja F,Kieszkievicz J,Church V,Francis-West PH,Schofield J,Rademacher TW,Lund T

    更新日期:2004-04-01 00:00:00

  • A comparative Raman spectroscopic study of cholinesterases.

    abstract::We report Raman spectra of various cholinesterases: lytic tetrameric forms (G4) obtained by tryptic digestion of asymmetric acetylcholinesterase (AChE) from Torpedo californica and Electrophorus electricus, a PI-PLC-treated dimeric form (G2) of AChE from T marmorata, and the soluble tetrameric form (G4) of butyrylchol...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(91)90167-y

    authors: Aslanian D,Grof P,Bon S,Masson P,Négrerie M,Chatel JM,Balkanski M,Taylor P,Massoulié J

    更新日期:1991-11-01 00:00:00

  • Effect of liver plasma membrane fluidity on endogenous phospholipase A2 activity.

    abstract::Investigations have been carried out on the influence of the phospholipid composition and the physicochemical properties of rat liver plasma membranes on the endogenous activity of membrane-bound phospholipase A2. The membrane phospholipid composition was modified by the incorporation of different phospholipids in the...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(87)90153-2

    authors: Petkova DH,Momchilova-Pankova AB,Koumanov KS

    更新日期:1987-11-01 00:00:00

  • Comparison of physico-chemical characteristics of four laccases from different basidiomycetes.

    abstract::New strains of basidiomycetes producing extracellular laccases (Trametes ochracea 92-78, and Trametes hirsuta 56) have been found by screening of isolates of Trametes fungi. The laccases from T. hirsuta 56 and T. ochracea 92-78 as well as two laccases from previously found and described strains of basidiomycetes, name...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2004.08.005

    authors: Shleev SV,Morozova OV,Nikitina OV,Gorshina ES,Rusinova TV,Serezhenkov VA,Burbaev DS,Gazaryan IG,Yaropolov AI

    更新日期:2004-09-01 00:00:00

  • Two peptides, TsAP-1 and TsAP-2, from the venom of the Brazilian yellow scorpion, Tityus serrulatus: evaluation of their antimicrobial and anticancer activities.

    abstract::Here we report two novel 17-mer amidated linear peptides (TsAP-1 and TsAP-2) whose structures were deduced from cDNAs cloned from a venom-derived cDNA library of the Brazilian yellow scorpion, Tityus serrulatus. Both mature peptides were structurally-characterised following their location in chromatographic fractions ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.06.003

    authors: Guo X,Ma C,Du Q,Wei R,Wang L,Zhou M,Chen T,Shaw C

    更新日期:2013-09-01 00:00:00

  • Oligomerisation of tryptocidine C, a Trp-rich cyclodecapeptide from the antimicrobial tyrothricin complex.

    abstract::Tryptocidine C (TpcC, cyclo[D-Phe1-Pro2-Trp3-D-Trp4-Asn5-Gln6-Trp7-Val8-Orn9-Leu10]) is a broad-spectrum antimicrobial peptide in the tyrothricin complex produced by a soil bacterium, Brevibacillus parabrevis. Electrospray mass spectrometric studies reveal the oligomerisation of TpcC into dimers and higher oligomers, ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.12.006

    authors: Rautenbach M,Kumar V,Vosloo JA,Masoudi Y,van Wyk RJ,Stander MA

    更新日期:2020-12-18 00:00:00

  • Insights into the fatty acid chain length specificity of the carboxylesterase PA3859 from Pseudomonas aeruginosa: A combined structural, biochemical and computational study.

    abstract::The open reading frame PA3859 of Pseudomonas aeruginosa encodes an intracellular carboxylesterase belonging to a group of microbial enzymes (EC 3.1.1.1) that catalyze the hydrolysis of aliphatic and aromatic esters with a broad substrate specificity. With few exceptions, for this class of enzymes, belonging to the α/β...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2010.09.001

    authors: Pesaresi A,Lamba D

    更新日期:2010-12-01 00:00:00

  • Biochemical characterization, stability studies and N-terminal sequence of a bi-functional inhibitor from Phaseolus aureus Roxb. (Mung bean).

    abstract::Herein, we report the purification and biochemical characterization of a novel bi-functional protein proteinase/amylase inhibitor from the dietary leguminous pulse Phaseolus aureus Roxb. (Vigna radiata L.) by means of acetic acid precipitation, salt fractionation, ion-exchange chromatography (DEAE-cellulose) and affin...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2005.05.007

    authors: Haq SK,Atif SM,Khan RH

    更新日期:2005-12-01 00:00:00

  • DNA binding thermodynamics and site stoichiometry as a function of polyamide size.

    abstract::The interactions of 6-8 ring hairpin polyamides (PAs) with the minor groove of DNA have been investigated extensively. More recent studies of large antiviral PAs (14-20 rings) active against small DNA tumor viruses lead to questions regarding the extent to which the DNA binding behaviors of the well studied, smaller P...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2019.07.021

    authors: Song Y,Niederschulte J,Bales KN,Park AH,Bashkin JK,Dupureur CM

    更新日期:2019-10-01 00:00:00

  • Lethal double-stranded RNA processing activity of ribonuclease III in the absence of suhB protein of Escherichia coli.

    abstract::The suhB gene of Escherichia coli has been defined by its mutant allele that suppresses other mutants in secY, rpoH, dnaB, and era. The suhB mutant by itself is cold sensitive, and is shown to have defects in protein synthesis. Starting with the suhB cold-sensitive mutant, cold-resistant suppressors were isolated. The...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(96)88139-9

    authors: Inada T,Nakamura Y

    更新日期:1995-01-01 00:00:00

  • May omega-3 fatty acid dietary supplementation help reduce severe complications in Covid-19 patients?

    abstract::In around 10% of SARS-CoV-2 infected patients, coronavirus disease-2019 (Covid-19) symptoms are complicated with a severe lung damage called Acute Respiratory Distress Syndrome (ARDS), which is often lethal. ARDS is mainly associated with an uncontrolled overproduction of immune cells and cytokines, called "cytokine s...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2020.09.003

    authors: Weill P,Plissonneau C,Legrand P,Rioux V,Thibault R

    更新日期:2020-12-01 00:00:00

  • Evidence for a phosphoenolpyruvate dependent sugar-phosphotransferase system in the mollicute Acholeplasma florum.

    abstract::In order to confirm the presence of a phosphoenolpyruvate (PEP)-dependent sugar-phosphotransferase system (PTS) in the mollicute Acholeplasma florum we studied the ability of cell free extracts of this organism to phosphorylate glucose and/or fructose in the presence of PEP. We also cloned and sequenced a DNA fragment...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(93)90098-d

    authors: Navas-Castillo J,Laigret F,Hocquellet A,Chang CJ,Bove JM

    更新日期:1993-01-01 00:00:00