Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA.

Abstract:

:DEAD-box RNA helicase proteins use the energy of ATP hydrolysis to drive the unwinding of duplex RNA. However, the mechanism that couples ATP utilization to duplex RNA unwinding is unknown. We measured ATP utilization and duplex RNA unwinding by DbpA, a non-processive bacterial DEAD-box RNA helicase specifically activated by the peptidyl transferase center (PTC) of 23S rRNA. Consumption of a single ATP molecule is sufficient to unwind and displace an 8 base pair rRNA strand annealed to a 32 base pair PTC-RNA "mother strand" fragment. Strand displacement occurs after ATP binding and hydrolysis but before P(i) product release. P(i) release weakens binding to rRNA, thereby facilitating the release of the unwound rRNA mother strand and the recycling of DbpA for additional rounds of unwinding. This work explains how ATPase activity of DEAD-box helicases is linked to RNA unwinding.

authors

Henn A,Cao W,Licciardello N,Heitkamp SE,Hackney DD,De La Cruz EM

doi

10.1073/pnas.0913081107

subject

Has Abstract

pub_date

2010-03-02 00:00:00

pages

4046-50

issue

9

eissn

0027-8424

issn

1091-6490

pii

0913081107

journal_volume

107

pub_type

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