Preparation of genomic DNA from a single species of uncultured magnetotactic bacterium by multiple-displacement amplification.

abstract：:We used a combination of stable isotope probing (SIP), gas chromatography-mass spectrometry-based respiration, isolation/cultivation, and quantitative PCR procedures to discover the identity and in situ growth of soil microorganisms that metabolize benzoic acid. We added [(13)C]benzoic acid or [(12)C]benzoic acid (100...

journal_title：Applied and environmental microbiology

authors： Pumphrey GM,Madsen EL

更新日期：2008-07-01 00:00:00

abstract：:Two rapid methods were evaluated for their extraction of plasmids from Clostridium perfringens. The first method involved lysis of 1 to 2 ml of C. perfringens culture by treatment with hyaluronidase, lysozyme, and sarcosyl. DNA, extracted with phenol-chloroform, was treated with RNase, boiled, and electrophoresed in a...

journal_title：Applied and environmental microbiology

authors： Mahony DE,Clark GA,Stringer MF,MacDonald MC,Duchesne DR,Mader JA

更新日期：1986-03-01 00:00:00

abstract：:Comparisons of 16S rDNA sequences were used to determine the phylogeny of not-yet-cultured spirochetes from hindguts of the African higher termite, Nasutitermes lujae (Wasmann). The 16S rRNA genes were amplified directly from spirochete-rich hindguts by using universal primers, and the amplified products were cloned i...

journal_title：Applied and environmental microbiology

authors： Paster BJ,Dewhirst FE,Cooke SM,Fussing V,Poulsen LK,Breznak JA

更新日期：1996-02-01 00:00:00

abstract：:Influenza A viruses (IAVs) in swine can cause sporadic infections and pandemic outbreaks among humans, but how avian IAV emerges in swine is still unclear. Unlike domestic swine, feral swine are free ranging and have many opportunities for IAV exposure through contacts with various habitats and animals, including migr...

journal_title：Applied and environmental microbiology

authors： Martin BE,Sun H,Carrel M,Cunningham FL,Baroch JA,Hanson-Dorr KC,Young SG,Schmit B,Nolting JM,Yoon KJ,Lutman MW,Pedersen K,Lager K,Bowman AS,Slemons RD,Smith DR,DeLiberto T,Wan XF

更新日期：2017-09-15 00:00:00

abstract：:Four bacteria, Bacillus cereus, B. subtilis, Escherichia coli, and Pseudomonas aeruginosa, were examined for the ability to remove Ag+, Cd2+, Cu2+, and La3+ from solution by batch equilibration methods. Cd and Cu sorption over the concentration range 0.001 to 1 mM was described by Freundlich isotherms. At 1 mM concent...

journal_title：Applied and environmental microbiology

authors： Mullen MD,Wolf DC,Ferris FG,Beveridge TJ,Flemming CA,Bailey GW

更新日期：1989-12-01 00:00:00

abstract：:The effect of long-term application of heavy metal-laden sewage sludge on the total heterotrophic aerobic and the cadmium-resistant soil bacterial communities was studied. Gram-positive bacteria were completely absent from resistant communities. These findings suggest that this group is highly susceptible to Cd. Shann...

journal_title：Applied and environmental microbiology

authors： Barkay T,Tripp SC,Olson BH

更新日期：1985-02-01 00:00:00

abstract：:In the vast number of random mutagenesis experiments that have targeted protein thermostability, single amino acid substitutions that increase the apparent melting temperature (Tm) of the enzyme more than 1 to 2 degrees C are rare and often require the creation of a large library of mutated genes. Here we present a ca...

journal_title：Applied and environmental microbiology

authors： Xiao Z,Bergeron H,Grosse S,Beauchemin M,Garron ML,Shaya D,Sulea T,Cygler M,Lau PC

更新日期：2008-02-01 00:00:00

abstract：:[This corrects the article on p. 483 in vol. 37.]. ...

journal_title：Applied and environmental microbiology

authors：

更新日期：1979-09-01 00:00:00

abstract：:Five strains of mesophilic, facultatively organotrophic, ore-leaching eubacteria were isolated from solfatara fields in Iceland and a uranium mine in the Federal Republic of Germany. The new organisms are aerobic gram-negative rods. They can use sulfidic ores or elemental sulfur as sole energy source, indicating that ...

journal_title：Applied and environmental microbiology

authors： Huber H,Stetter KO

更新日期：1990-02-01 00:00:00

abstract：:The presence of Yersinia ruckeri in a French fish farm was investigated. Y. ruckeri was isolated mainly from algae and sediment samples rather than from water. Twenty-two Y. ruckeri isolates were obtained, and three strains were distinguished by enterobacterial repetitive intergenic consensus PCR amplification. These ...

journal_title：Applied and environmental microbiology

authors： Coquet L,Cosette P,Quillet L,Petit F,Junter GA,Jouenne T

更新日期：2002-02-01 00:00:00

abstract：:The design of fully or partly defined media for mycoplasma cultivation involves the need to provide the essential lipids, cholesterol and long-chain fatty acids, in an assimilable and nontoxic form. This study introduces cyclodextrins (CDs) as carriers of these lipids, thus suggesting alternatives to serum or bovine s...

journal_title：Applied and environmental microbiology

authors： Greenberg-Ofrath N,Terespolosky Y,Kahane I,Bar R

更新日期：1993-02-01 00:00:00

abstract：:A single gene (xylB) encoding both beta-D-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) activities was identified and sequenced from the ruminal bacterium Butyrivibrio fibrisolvens. The xylB gene consists of a 1.551-bp open reading frame (ORF) encoding 517 amino acids. A subclone containing a ...

journal_title：Applied and environmental microbiology

authors： Utt EA,Eddy CK,Keshav KF,Ingram LO

更新日期：1991-04-01 00:00:00

abstract：:The composition of the active microbial (bacterial and fungal) soil community in an arable wheat field subjected to different management practices was examined at five times during a 1-year period. Field sections were fertilized either at good agricultural practice (GAP) levels or at reduced levels (0.5x GAP) and were...

journal_title：Applied and environmental microbiology

authors： Girvan MS,Bullimore J,Ball AS,Pretty JN,Osborn AM

更新日期：2004-05-01 00:00:00

abstract：:Contamination of soil and water with heavy metals and metalloids is a serious environmental problem. Cadmium and arsenic are major environmental contaminants that pose a serious threat to human health. Although toxicities of cadmium and arsenic to living organisms have been extensively studied, the molecular mechanism...

journal_title：Applied and environmental microbiology

authors： Techo T,Charoenpuntaweesin S,Auesukaree C

更新日期：2020-10-15 00:00:00

abstract：:The probability of recovering pathogenic Escherichia coli from food by the Bacteriological Analytical Manual method was determined by the effects of several factors: the number of strains per food, the ability of pathogenic strains to survive enrichment, and the frequency of plasmid loss during enrichment. Biochemical...

journal_title：Applied and environmental microbiology

authors： Hill WE,Ferreira JL,Payne WL,Jones VM

更新日期：1985-06-01 00:00:00

abstract：:To define conditions promoting inherited infection by Lyme disease spirochetes in Ixodes ticks, we variously infected ticks with Borrelia afzelii and examined their progenies by dark-field microscopy, immunofluorescence, PCR, and serial passage. No episode of inherited infection was evident, regardless of instar or ge...

journal_title：Applied and environmental microbiology

authors： Matuschka FR,Schinkel TW,Klug B,Spielman A,Richter D

更新日期：1998-08-01 00:00:00

abstract：:NisI confers immunity against nisin, with high substrate specificity to prevent a suicidal effect in nisin-producing Lactococcus lactis strains. However, the NisI maturation process as well as its influence on nisin resistance has not been characterized. Here, we report the roles of lipoprotein signal peptidase II (Ls...

journal_title：Applied and environmental microbiology

authors： Liu J,Xiong H,Du Y,Wiwatanaratanabutr I,Wu X,Zhao G,Zhu H,Caiyin Q,Qiao J

更新日期：2020-09-17 00:00:00

abstract：:Six 16S rRNA-targeted oligonucleotide probes were designed, validated, and used to quantify predominant groups of anaerobic bacteria in human fecal samples. A set of two probes was specific for species of the Bacteroides fragilis group and the species Bacteroides distasonis. Two others were designed to detect species ...

journal_title：Applied and environmental microbiology

authors： Franks AH,Harmsen HJ,Raangs GC,Jansen GJ,Schut F,Welling GW

更新日期：1998-09-01 00:00:00

abstract：:Despite the benefits to the global food supply and agricultural economies, pesticides are believed to pose a threat to the health of both humans and wildlife. Chlorpyrifos (CP), a commonly used organophosphate insecticide, has poor target specificity and causes acute neurotoxicity in a wide range of species via the su...

journal_title：Applied and environmental microbiology

authors： Daisley BA,Trinder M,McDowell TW,Collins SL,Sumarah MW,Reid G

更新日期：2018-04-16 00:00:00

abstract：:Total coliforms and total coliforms resistant to streptomycin, tetracycline, or chloramphenicol were isolated from filtered activated sludge effluents before and after UV light irradiation. Although the UV irradiation effectively disinfected the wastewater effluent, the percentage of the total surviving coliform popul...

journal_title：Applied and environmental microbiology

authors： Meckes MC

更新日期：1982-02-01 00:00:00

abstract：:Eighteen strains of Agrobacterium tumefaciens isolated from crown galls were tested for agrocin production. Of six agrocin-producing strains, one (D286) produced a broad-host-range agrocin active against strains carrying nopaline, octopine, and agropine type Ti plasmids. Sensitivity to agrocin D286 was found to map in...

journal_title：Applied and environmental microbiology

authors： Hendson M,Askjaer L,Thomson JA,van Montagu M

更新日期：1983-05-01 00:00:00

abstract：:Sulfate-reducing bacteria (SRB) in anoxic waters and sediments are the major producers of methylmercury in aquatic systems. Although a considerable amount of work has addressed the environmental factors that control methylmercury formation and the conditions that control bioavailability of inorganic mercury to SRB, li...

journal_title：Applied and environmental microbiology

authors： Ekstrom EB,Morel FM,Benoit JM

更新日期：2003-09-01 00:00:00

abstract：:This work describes the purification and characterization of propionicin F, the first bacteriocin isolated from Propionibacterium freudenreichii. The bacteriocin has a bactericidal activity and is only active against strains of P. freudenreichii. Propionicin F appears to be formed through a processing pathway new to b...

journal_title：Applied and environmental microbiology

authors： Brede DA,Faye T,Johnsborg O,Odegård I,Nes IF,Holo H

更新日期：2004-12-01 00:00:00

abstract：:The bacterial epiphyte Pseudomonas syringae MF714R was cultured on agar or in broth or collected from colonized leaves; it was then inoculated onto greenhouse-grown bean plants incubated in a growth chamber at low relative humidity or in the field or onto field-grown bean plants. Cells cultured in liquid medium surviv...

journal_title：Applied and environmental microbiology

authors： Wilson M,Lindow SE

更新日期：1993-02-01 00:00:00

abstract：:The population dynamics of pseudomonads in gilt-head sea bream Mediterranean fish (Sparus aurata) stored under different conditions were studied. Phenotypic analysis and sodium dodecyl sulfate-polyacrylamide gel electrophoresis of whole-cell proteins were performed to identify a total of 106 Pseudomonas strains isolat...

journal_title：Applied and environmental microbiology

authors： Tryfinopoulou P,Tsakalidou E,Nychas GJ

更新日期：2002-01-01 00:00:00

abstract：:A system of tangential-flow filtration was evaluated for use in the detection of Giardia cysts in drinking water. This method was more sensitive in recovering cysts than a frequently used wound-orlon system of through-filtration. ...

journal_title：Applied and environmental microbiology

authors： Isaac-Renton JL,Fung CP,Lochan A

更新日期：1986-08-01 00:00:00

abstract：:We have constructed the first Escherichia coli-Veillonella shuttle vector based on an endogenous plasmid (pVJL1) isolated from a clinical Veillonella strain. A highly transformable Veillonella strain was also identified. Both the shuttle vector and the transformable strain should be valuable tools for future Veillonel...

journal_title：Applied and environmental microbiology

authors： Liu J,Xie Z,Merritt J,Qi F

更新日期：2012-05-01 00:00:00

abstract：:A total of 286 isolates of Pseudomonas maltophilia was collected from sheep exhibiting brown or yellowish fleece rot and from fly-strike lesions. Enzyme activities for 10 of the isolates were examined by plate tests and with the API ZYM system and compared with the enzymatic profile of a human type strain of P. maltop...

journal_title：Applied and environmental microbiology

authors： Macdiarmid JA,Burrell DH

更新日期：1986-02-01 00:00:00

abstract：:A separation procedure for the analysis of the enzyme components of the hyperthermophilic bacterium Thermotoga maritima involved in cellulose and xylan degradation was developed. Resolution of the enzymes was achieved by a combination of fast protein liquid chromatography anion exchange and hydrophobic interaction chr...

journal_title：Applied and environmental microbiology

authors： Bronnenmeier K,Kern A,Liebl W,Staudenbauer WL

更新日期：1995-04-01 00:00:00

abstract：:The phylogenetic diversity and species richness of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were examined with aquarium biofiltration systems. Species richness, deduced from rarefaction analysis, and diversity indices indicated that the phylogenetic diversity and species richness of AOA are greater than thos...

journal_title：Applied and environmental microbiology

authors： Urakawa H,Tajima Y,Numata Y,Tsuneda S

更新日期：2008-02-01 00:00:00