Complete sequence analysis of rice transitory yellowing virus and its comparison to rice yellow stunt virus.

Abstract:

:Rice transitory yellowing virus (RTYV), a member of the genus Nucleorhabdovirus, is closely related to or synonymous with rice yellow stunt virus (RYSV). To clarify the relationship between RTYV and RYSV, we determined the nucleotide sequence of the RTYV genome. The RTYV genome consists of 14,029 nucleotides. The overall nucleotide identity between RTYV and RYSV was 98.5%, and the deduced amino acid sequence identities between the seven genes in RTYV and RYSV ranged from 82.3 to 99.7%. The sequence information from RTYV revealed that these two viruses should be categorized as members of the same species rather than distinct species.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Hiraguri A,Hibino H,Hayashi T,Shimizu T,Uehara-Ichiki T,Omura T,Sasaya T

doi

10.1007/s00705-009-0557-8

subject

Has Abstract

pub_date

2010-02-01 00:00:00

pages

243-5

issue

2

eissn

0304-8608

issn

1432-8798

journal_volume

155

pub_type

杂志文章
  • Sequence analysis and genomic organization of a new insect iflavirus, Sogatella furcifera honeydew virus 1.

    abstract::A novel iflavirus, tentatively named "Sogatella furcifera honeydew virus 1" (SFHV1), discovered through transcriptome sequencing analysis of white-backed planthoppers (Sogatella furcifera) collected in southern China, is described here. The full genome of SFHV1 is 10,837 nucleotides (nt) long, including the polyA tail...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3817-7

    authors: Wu N,Zhang P,Liu W,Cao M,Wang X

    更新日期:2018-07-01 00:00:00

  • L and S species of Machupo virion RNA contain a mixture of complementary strands. Brief report.

    abstract::RNase resistance analyses of native, heat-denatured and self-annealed L and S species of Machupo virion RNA revealed the presence of complementary sequences. Self-annealing was concentration-dependent. The data indicate, that complementary sequences were present in separate RNA strands. ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01310900

    authors: Lukashevich IS,Golubev VP,Stcheslyenok EP,Finskaya NN,Stelmakh TA

    更新日期:1986-01-01 00:00:00

  • Epidemiology and genetic relatedness of measles virus infection in Uttar Pradesh, India, during 2009-2010.

    abstract::Measles surveillance and epidemiological investigation are beneficial tools for genetic analysis and documentation of the interruption of transmission of endemic measles. In this study, areas of Uttar Pradesh, India, associated with measles outbreaks were investigated. Random blood and urine samples were collected fro...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-012-1227-9

    authors: Shakya AK,Shukla V,Maan HS,Dhole TN

    更新日期:2012-04-01 00:00:00

  • Rescue of a bovine respiratory syncytial virus genomic RNA analog by bovine, human and ovine respiratory syncytial viruses confirms the "functional integrity" and "cross-recognition" of BRSV cis-acting elements by HRSV and ORSV.

    abstract::The nucleotide sequences of the 3' leader and 5' trailer regions were determined for genomic RNA of bovine respiratory syncytial virus (BRSV) strain A-51908. The leader and trailer sequences are '45' and '161' nucleotides in length, respectively. The functionality of BRSV leader and trailer sequences and their recogni...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050719

    authors: Yunus AS,Krishnamurthy S,Pastey MK,Huang Z,Khattar SK,Collins PL,Samal SK

    更新日期:1999-01-01 00:00:00

  • Bovine viral diarrhoea virus-specific bovine monoclonal antibody.

    abstract::A bovine monoclonal antibody specific for bovine viral diarrhoea virus (BVDV) recognized all the reference strains of BVDV and over 90% of the field isolates tested. It neutralized the virus and precipitated a 56 k-58 k viral protein. ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01316756

    authors: Onisk DV,Srikumaran S,Kelling CL,Frey ML

    更新日期:1991-01-01 00:00:00

  • Properties of human adenoviruses 5 and 7 grown in guinea-pig cells.

    abstract::Human adenoviruses (Ad) 5 and 7 multiplied poorly in guinea-pig cell cultures as compared to HeLa cells. Ad 7 had a modified polypeptide composition with a major 43K component. This change persisted for up to 4 passages in HeLa cells. Ad 5 was not changed by passage in guinea-pig cells. ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01320631

    authors: Thomasset N,Chardonnet Y

    更新日期:1980-01-01 00:00:00

  • Detection of human bocavirus-2 in children with acute gastroenteritis in South Korea.

    abstract::Human bocavirus (HBoV)-2, a new parvovirus, has been identified in stool samples and is suggested to be one of the etiologic agents of acute gastroenteritis (GE). The purpose of this study was to investigate the prevalence of HBoV-2 in children with GE. Stool samples were collected from 358 children hospitalized with ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-009-0533-3

    authors: Han TH,Kim CH,Park SH,Kim EJ,Chung JY,Hwang ES

    更新日期:2009-01-01 00:00:00

  • Re-emergence of genotype G9 during a five-and-a-half-year period in Turkish children with rotavirus diarrhea.

    abstract::This study was done to understand the dynamics of rotavirus genotype distribution in Turkish children. Samples were collected from January 2006 through August 2011 from children at a hospital in Ankara. Rotavirus was detected in 28 % (241/889) of the samples. Genotype G9P[8] was predominant (28 %), followed by G1P[8] ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2986-5

    authors: Bozdayi G,Altay A,Yahiro T,Ahmed S,Meral M,Dogan B,Dinc B,Yeniaras A,Bilge YD,Ahmed K

    更新日期:2016-10-01 00:00:00

  • In vitro antiviral activity of lactoferrin and ribavirin upon hantavirus.

    abstract::Bovine lactoferrin (LF) and ribavirin (Rbv) were tested as antiviral agents against Seoul type hantavirus (SR-11 strain) in vitro. Hantaviral foci number in Vero E6 cells infected with SR-11 was reduced with LF treatment by 5 days post infection to obtain a 50% effective dose (ED50) of 2500 microg/ml, while pretreatme...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050070077

    authors: Murphy ME,Kariwa H,Mizutani T,Yoshimatsu K,Arikawa J,Takashima I

    更新日期:2000-01-01 00:00:00

  • Perinuclear accumulation of hepatitis A virus proteins, RNA, and particles and ultrastructural alterations in infected cells.

    abstract::The exact intracellular site of hepatitis A virus (HAV) production is unknown, possibly due to its usually slow and inefficient replication. Using immunocytochemistry and in-situ RT-PCR, we show that in cells infected with the rapidly replicating HAV strain HAS-15, viral proteins and RNA are scattered throughout the c...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050170003

    authors: Klinger MH,Kämmerer R,Hornei B,Gauss-Müller V

    更新日期:2001-12-01 00:00:00

  • Morbillivirus infection in pilot whales: strict protein requirement drives genetic conservation.

    abstract::Morbillivirus infection of marine mammals has been documented across all of the world's oceans. Whilst infection is generally demonstrated using a variety of histopathological and serological techniques, where possible, the use of molecular techniques is being used to enable accurate genetic typing of virus strains th...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1042-8

    authors: Banyard AC,Tiwari A,Barrett T

    更新日期:2011-10-01 00:00:00

  • High-frequency mutation and recombination are responsible for the emergence of novel porcine reproductive and respiratory syndrome virus in northwest China.

    abstract::Porcine reproductive and respiratory syndrome (PRRS) is one of the most highly infectious diseases in the pig industry, resulting in enormous economic losses worldwide. In this study, a PRRS virus (PRRSV) strain was isolated from primary porcine alveolar macrophage cells in Xinjiang in northwest China. This new strain...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-019-04373-z

    authors: Zhang X,Li Y,Xiao S,Yang X,Chen X,Wu P,Song J,Ma Z,Cai Z,Jiang M,Zhang Y,Yang Y,Zhang Z,Zhou Z,Sheng J,Wang H

    更新日期:2019-11-01 00:00:00

  • Proteins specified by African swine fever virus. I. Analysis of viral structural proteins and antigenic properties.

    abstract::At least 28 polypeptides have been identified in intracellular virus, with molecular weights ranging from 11,500 to 243,000 daltons. By treatment with Nonidet P-40 and 2-mercaptoethanol it is possible to obtain subviral particles that have lost some proteins and have a density in CsCl of 1.31 g/cm3 which is higher tha...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01314979

    authors: Tabarés E,Marcotegui MA,Fernández M,Sánchez-Botija C

    更新日期:1980-01-01 00:00:00

  • Human cytomegalovirus persists in cells treated with interferon. Brief report.

    abstract::Human cytomegalovirus disappeared from cultures continuously exposed to interferon. When interferon was removed, high titers of virus reappeared. Cytomegalovirus was thus able to persist in potentially infectious form in cells protected by interferon. ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309276

    authors: Rodriguez JE,Loepfe TR,Stinski MF

    更新日期:1983-01-01 00:00:00

  • Inactivation and morphological changes of avian influenza virus by copper ions.

    abstract::The infectivity of the H9N2 virus to MDCK cells was time-dependently inhibited by Cu(2+) at concentrations of 2.5-250 microM. In 25 microM Cu(2+) solution, the virus titer decreased by approximately 3 and 4 log within 3 and 6 h, respectively. Compared to Cu(2+), Zn(2+) was much less effective in virus inactivation. Th...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-008-0154-2

    authors: Horie M,Ogawa H,Yoshida Y,Yamada K,Hara A,Ozawa K,Matsuda S,Mizota C,Tani M,Yamamoto Y,Yamada M,Nakamura K,Imai K

    更新日期:2008-01-01 00:00:00

  • Comparative sequence analysis of a polymorphic region of the spike glycoprotein S1 subunit of enteric bovine coronavirus isolates.

    abstract::Complementary oligonucleotide primers which flank a 1146-nucleotide gene fragment (S1B: nt 1185 to 2333) encompassing a polymorphic region (nt 1368 to 1776) of the S1 subunit of bovine coronavirus spike glycoprotein were used for enzymatic amplification by PCR. We chose four clinical isolates, recovered from cases of ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01310017

    authors: Rekik MR,Dea S

    更新日期:1994-01-01 00:00:00

  • Immune and inflammatory response in pigs during acute influenza caused by H1N1 swine influenza virus.

    abstract::Swine influenza (SI) is an acute respiratory disease of pigs, caused by swine influenza virus (SIV). Little is known about the inflammatory response in the lung during acute SI and its correlation with clinical signs or lung pathology. Moreover, until now there has been a limited amount of data available on the relati...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-014-2116-1

    authors: Pomorska-Mól M,Markowska-Daniel I,Kwit K,Czyżewska E,Dors A,Rachubik J,Pejsak Z

    更新日期:2014-10-01 00:00:00

  • Detection of new vitiviruses infecting grapevine in California.

    abstract::Recently, five new viruses from the genus Vitivirus were identified and named grapevine virus G, H, I, J and L. These viruses were targeted in a survey to evaluate their prevalence in different grapevine populations in California. Excluding a single detection of GVJ, other vitiviruses were detected infecting several g...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-019-04355-1

    authors: Diaz-Lara A,Brisbane RS,Aram K,Golino D,Al Rwahnih M

    更新日期:2019-10-01 00:00:00

  • Characterization of a member of a new Potyvirus species infecting arracacha in Brazil.

    abstract::An arracacha (Arracacia xanthorrhiza) plant collected in Brazil was found to be infected by a new virus. This viral isolate (named C17) systemically infected Nicotiana benthamiana and Apium graveolens. A polyclonal antibody was raised, and analysis of our arracacha germplasm collection showed a high infection rate of ...

    journal_title:Archives of virology

    pub_type: 杂志文章,评审

    doi:10.1007/s00705-008-0289-1

    authors: Orílio AF,Dusi AN,Madeira NR,Inoue-Nagata AK

    更新日期:2009-01-01 00:00:00

  • Persistent parainfluenza type 1 (6/94) infection of brain cells in tissue culture.

    abstract::A state of persistent infection with parainfluenza type 1 virus (6/94 strain) was established in cultures of human and bovine brain cells. Following primary infection of human brain cells, viral cytopathic effect (CPE) and hemadsorption (HAD) depended on the multiplicity of infection. After persistent infection was es...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317954

    authors: Wroblewska Z,Santoli D,Gilden D,Lewandowski L,Koprowski H

    更新日期:1976-01-01 00:00:00

  • Transplacental infection and embryonic death following maternal exposure to porcine parvovirus near the time of conception.

    abstract::Each of 20 gilts (principals) from a commercial swine herd free of antibody for porcine parvovirus (PPV) was exposed intranasally and orally to PPV at the onset of gestation. The gilts were killed and necropsied 22 +/- 1 days later to determine the effect of the virus on their embryos. An equal number of gilts (contro...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01340540

    authors: Mengeling WL,Paul PS,Brown TT

    更新日期:1980-01-01 00:00:00

  • Comparative analysis of common regions found in babuviruses and alphasatellite molecules.

    abstract::Viruses in the genus Babuvirus have multi-component ssDNA genomes and often associate with alphasatellite molecules containing two common motifs, a common-region stem-loop (CR-SL) involved in initiation of rolling-circle replication and a common-region major (CR-M) motif involved in secondary-strand synthesis. We comp...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-3168-1

    authors: Stainton D,Martin DP,Collings DA,Varsani A

    更新日期:2017-03-01 00:00:00

  • Complete genome sequence of SRT8, a novel T1-like Escherichia coli bacteriophage.

    abstract::In this study, an Escherichia coli virulent phage, SRT8, was isolated from sewage sludge samples collected from Jinan, Shandong Province, China. The genome of phage SRT8 consists of 49,579 bp with 47.83% G+C content. The phage genome contains 84 putative protein-coding genes, and no rRNA or tRNA genes. Comparative gen...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3778-x

    authors: Zhao K,Song S,Zhao Z,Gu P,Fan X,Li Q

    更新日期:2018-06-01 00:00:00

  • The association of African swine fever virus with blood components of infected pigs.

    abstract::The distribution of African swine fever virus (ASFV) in whole blood, plasma, red blood cells (RBC) and white blood cell (WbC) sub-populations was determined in pigs infected with virulent virus. Changes in the RBC and WBC populations were also examined. Total WBC counts decreased and RBC numbers remained unchanged dur...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01315054

    authors: Wardley RC,Wilkinson PJ

    更新日期:1977-01-01 00:00:00

  • Poliovirus modulates Bcl-xl expression in the human U937 promonocytic cell line.

    abstract::Poliovirus induces bcl-2-independent apoptosis in the human U937 promonocytic cell line [28]. Here we describe that this cell death, induced after viral infection, correlates with the modulation of the protooncoprotein Bcl-xl. Furthermore, poliovirus infection decreases the detected Bcl-xl in a U937 clone that overexp...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-002-0881-8

    authors: Calandria C,López-Guerrero JA

    更新日期:2002-12-01 00:00:00

  • Molecular diversity of the coat protein-encoding region of Barley yellow dwarf virus-PAV and Barley yellow dwarf virus-MAV from Latvia and Sweden.

    abstract::The sequence variability of Barley yellow dwarf virus-PAV (PAV) and Barley yellow dwarf virus-MAV (MAV) was studied by comparing 502 nucleotides from the coat protein-encoding region of six isolates from Latvia and four from Sweden. The diversity within MAV was low (>97% sequence identity), also when compared to isola...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0242-2

    authors: Bisnieks M,Kvarnheden A,Sigvald R,Valkonen JP

    更新日期:2004-04-01 00:00:00

  • Antigenic diversity of Norwalk-like viruses: expression of the capsid protein of a genogroup I virus, distantly related to Norwalk virus.

    abstract::The gene encoding the capsid protein of a genogroup I Norwalk-like virus (NLV) (Hu/NLV/Stav/95/Nor) was cloned and expressed in insect cells using a baculovirus vector. The His-tagged recombinant capsid protein (rStav) was antigenic and immunogenic, showed an apparent molecular weight of approximately 68 kD in protein...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050665

    authors: Myrmel M,Rimstad E

    更新日期:2000-01-01 00:00:00

  • Lack of quantitative correlation between inhibition of replication of rhinoviruses by an antiviral drug and their stabilization.

    abstract::R 61,837, a new antirhinovirus compound, was able to protect several susceptible rhinoviruses against inactivation by mild acidification or heat. This observation strengthens the hypothesis that the drug exerts antiviral activity by a direct interaction with the viral protein capsid to stabilize the particle. However,...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01311037

    authors: Andries K,Dewindt B,Snoeks J,Willebrords R

    更新日期:1989-01-01 00:00:00

  • Two distinct begomoviruses associated with an alphasatellite coinfecting Emilia sonchifolia in Thailand.

    abstract::Emilia sonchifolia is a traditionally used medicinal plant that is widespread in tropical and subtropical regions of the world. Yellow vein symptoms were observed in E. sonchifolia plants in fields in the county of Koh Samui, Surat Thani Province, Thailand, in August 2015. Two distinct begomoviruses, designated TH4872...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3762-5

    authors: Zhao L,Zhong J,Zhang X,Yin Y,Li T,Ding M

    更新日期:2018-06-01 00:00:00

  • Molecular diversity of poleroviruses infecting cucurbit crops in four countries reveals the presence of members of six distinct species.

    abstract::When 66 cucurbit samples with yellowing symptoms from fields in Mali, the Philippines, Thailand and Uzbekistan were screened by RT-PCR using universal polerovirus primers, 21 were identified as harboring polerovirus RNA. When these 21 samples were screened with specific primers for the known cucurbit-infecting polerov...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-013-1939-5

    authors: Knierim D,Tsai WS,Maiss E,Kenyon L

    更新日期:2014-06-01 00:00:00