Experimental and computational characterization of biological liquid crystals: a review of single-molecule bioassays.

Abstract:

:Quantitative understanding of the mechanical behavior of biological liquid crystals such as proteins is essential for gaining insight into their biological functions, since some proteins perform notable mechanical functions. Recently, single-molecule experiments have allowed not only the quantitative characterization of the mechanical behavior of proteins such as protein unfolding mechanics, but also the exploration of the free energy landscape for protein folding. In this work, we have reviewed the current state-of-art in single-molecule bioassays that enable quantitative studies on protein unfolding mechanics and/or various molecular interactions. Specifically, single-molecule pulling experiments based on atomic force microscopy (AFM) have been overviewed. In addition, the computational simulations on single-molecule pulling experiments have been reviewed. We have also reviewed the AFM cantilever-based bioassay that provides insight into various molecular interactions. Our review highlights the AFM-based single-molecule bioassay for quantitative characterization of biological liquid crystals such as proteins.

journal_name

Int J Mol Sci

authors

Eom K,Yang J,Park J,Yoon G,Soo Sohn Y,Park S,Yoon DS,Na S,Kwon T

doi

10.3390/ijms10094009

subject

Has Abstract

pub_date

2009-09-10 00:00:00

pages

4009-32

issue

9

issn

1422-0067

journal_volume

10

pub_type

杂志文章,评审
  • Current Insights into Oral Cancer Epigenetics.

    abstract::Epigenetic modifications have emerged into one of the cancer hallmarks, replacing the concept of malignant pathologies as being solely genetic-based conditions. The epigenetic landscape is responsible for normal development but also for the heterogeneity among tissues in terms of gene expression patterns. Dysregulatio...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19030670

    authors: Irimie AI,Ciocan C,Gulei D,Mehterov N,Atanasov AG,Dudea D,Berindan-Neagoe I

    更新日期:2018-02-27 00:00:00

  • Oral Administration of Lactobacillus Casei Expressing Flagellin A Protein Confers Effective Protection against Aeromonas Veronii in Common Carp, Cyprinus Carpio.

    abstract::Aeromonas veronii is a pathogen capable of infecting humans, livestock and aquatic animals, resulting in serious economic losses. In this study, two recombinant Lactobacillus casei expressing flagellin A (FlaA) of A. veronii, Lc-pPG-1-FlaA (surface-displayed) and Lc-pPG-2-FlaA (secretory) were constructed. The immune ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21010033

    authors: Tian JX,Kang YH,Chu GS,Liu HJ,Kong YD,Zhao LH,Kong YX,Shan XF,Wang GQ

    更新日期:2019-12-19 00:00:00

  • Antibacterial Free Fatty Acids and Monoglycerides: Biological Activities, Experimental Testing, and Therapeutic Applications.

    abstract::Antimicrobial lipids such as fatty acids and monoglycerides are promising antibacterial agents that destabilize bacterial cell membranes, causing a wide range of direct and indirect inhibitory effects. The goal of this review is to introduce the latest experimental approaches for characterizing how antimicrobial lipid...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19041114

    authors: Yoon BK,Jackman JA,Valle-González ER,Cho NJ

    更新日期:2018-04-08 00:00:00

  • The Postnatal Offspring of Finasteride-Treated Male Rats Shows Hyperglycaemia, Elevated Hepatic Glycogen Storage and Altered GLUT2, IR, and AR Expression in the Liver.

    abstract:BACKGROUND:A growing body of data indicates that the physiology of the liver is sex-hormone dependent, with some types of liver failure occurring more frequently in males, and some in females. In males, in physiological conditions, testosterone acts via androgen receptors (AR) to increase insulin receptor (IR) expressi...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms22031242

    authors: Kur P,Kolasa-Wołosiuk A,Grabowska M,Kram A,Tarnowski M,Baranowska-Bosiacka I,Rzeszotek S,Piasecka M,Wiszniewska B

    更新日期:2021-01-27 00:00:00

  • Is the secret of VDAC Isoforms in their gene regulation? Characterization of human VDAC genes expression profile, promoter activity, and transcriptional regulators.

    abstract::VDACs (voltage-dependent anion-selective channels) are pore-forming proteins of the outer mitochondrial membrane, whose permeability is primarily due to VDACs' presence. In higher eukaryotes, three isoforms are raised during the evolution: they have the same exon-intron organization, and the proteins show the same cha...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21197388

    authors: Zinghirino F,Pappalardo XG,Messina A,Guarino F,De Pinto V

    更新日期:2020-10-07 00:00:00

  • De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome.

    abstract::Grasshoppers are common pests but also have high nutritional and commercial potential. Xenocatantops brachycerus Willemse (Orthoptera: Acrididae) is an economically important grasshopper species that is reared in China. Using the IlluminaHiSeqTM 4000 platform, three transcriptomes of the adult male, adult female, and ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19020520

    authors: Zhao L,Zhang X,Qiu Z,Huang Y

    更新日期:2018-02-08 00:00:00

  • Integrated Transcriptional and Proteomic Profiling Reveals Potential Amino Acid Transporters Targeted by Nitrogen Limitation Adaptation.

    abstract::Nitrogen (N) is essential for plant growth and crop productivity. Organic N is a major form of remobilized N in plants' response to N limitation. It is necessary to understand the regulatory role of N limitation adaption (NLA) in organic N remobilization for this adaptive response. Transcriptional and proteomic analys...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21062171

    authors: Liao Q,Tang TJ,Zhou T,Song HX,Hua YP,Zhang ZH

    更新日期:2020-03-21 00:00:00

  • The Role of Cell-Penetrating Peptide and Transferrin on Enhanced Delivery of Drug to Brain.

    abstract::The challenge of effectively delivering therapeutic agents to brain has led to an entire field of active research devoted to overcome the blood brain barrier (BBB) and efficiently deliver drugs to brain. This review focusses on exploring the facets of a novel platform designed for the delivery of drugs to brain. The p...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17060806

    authors: Sharma G,Lakkadwala S,Modgil A,Singh J

    更新日期:2016-05-25 00:00:00

  • The effects of inhibiting hedgehog signaling pathways by using specific antagonist cyclopamine on the chondrogenic differentiation of mesenchymal stem cells.

    abstract::This study aimed to investigate the effects of cyclopamine, a specific inhibitor of Hedgehog signaling pathways, on the chondrogenic differentiation of mesenchymal stem cells (MSCs). During culture, the experimental groups were treated with cyclopamine and their cell proliferation status was assessed using the MTT tes...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms14035966

    authors: Wu X,Cai ZD,Lou LM,Chen ZR

    更新日期:2013-03-14 00:00:00

  • The Implication of Substance P in the Development of Tendinopathy: A Case Control Study.

    abstract::It was reported that substance P had beneficial effects in the healing of acute tendon injury. However, the relationship between substance P and degenerative tendinopathy development remains unclear. The purpose of this study was to determine the role of substance P in the pathogenesis of tendinopathy. Healthy and ten...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18061241

    authors: Han SH,Choi W,Song J,Kim J,Lee S,Choi Y,Byun SE,Ahn T,Ahn H,Ding C,Baik L,Ward S,Ting K,Lee S

    更新日期:2017-06-09 00:00:00

  • Increase in Toxicity of Anticancer Drugs by PMTPV, a Claudin-1-Binding Peptide, Mediated via Down-Regulation of Claudin-1 in Human Lung Adenocarcinoma A549 Cells.

    abstract::Claudin-1 (CLDN1), a tight junctional protein, is highly expressed in lung cancer cells and may contribute to chemoresistance. A drug which decreases CLDN1 expression could be a chemosensitizer for enhancing the efficacy of anticancer drugs, but there is no such drug known. We found that PMTPV, a short peptide, which ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21165909

    authors: Nasako H,Takashina Y,Eguchi H,Ito A,Ishikawa Y,Matsunaga T,Endo S,Ikari A

    更新日期:2020-08-17 00:00:00

  • Novel Strategies on Personalized Medicine for Breast Cancer Treatment: An Update.

    abstract::Breast cancer is the most common cancer type among women worldwide. With breast cancer patients and survivors being reported to experience a repertoire of symptoms that are detrimental to their quality of life, the development of breast cancer treatment strategies that are effective with minimal side effects is theref...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18112423

    authors: Chan CWH,Law BMH,So WKW,Chow KM,Waye MMY

    更新日期:2017-11-15 00:00:00

  • Solute Carrier Family 27 Member 4 (SLC27A4) Enhances Cell Growth, Migration, and Invasion in Breast Cancer Cells.

    abstract::Fatty acid metabolism is important in the regulation of breast cancer progression. Some of the proteins involved in fatty acid transport have been demonstrated to promote the proliferation, migration, and invasion in breast cancer cells. Solute carrier family 27 member 4 (SLC27A4) is a fatty acid transporter protein a...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19113434

    authors: Yen MC,Chou SK,Kan JY,Kuo PL,Hou MF,Hsu YL

    更新日期:2018-11-01 00:00:00

  • Dietary Wheat Amylase Trypsin Inhibitors Impact Alzheimer's Disease Pathology in 5xFAD Model Mice.

    abstract::Wheat amylase trypsin inhibitors (ATIs) represent a common dietary protein component of gluten-containing cereals (wheat, rye, and barley). They act as toll-like receptor 4 ligands, and are largely resistant to intestinal proteases, eliciting a mild inflammatory response within the intestine after oral ingestion. Impo...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21176288

    authors: Dos Santos Guilherme M,Zevallos VF,Pesi A,Stoye NM,Nguyen VTT,Radyushkin K,Schwiertz A,Schmitt U,Schuppan D,Endres K

    更新日期:2020-08-31 00:00:00

  • Proneural-Mesenchymal Transition: Phenotypic Plasticity to Acquire Multitherapy Resistance in Glioblastoma.

    abstract::Glioblastoma (GBM) is an extremely aggressive tumor of the central nervous system, with a prognosis of 12-15 months and just 3-5% of survival over 5 years. This is mainly because most patients suffer recurrence after treatment that currently consists in maximal resection followed by radio- and chemotherapy with temozo...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20112746

    authors: Fedele M,Cerchia L,Pegoraro S,Sgarra R,Manfioletti G

    更新日期:2019-06-04 00:00:00

  • Stable Expression of Basic Fibroblast Growth Factor in Chloroplasts of Tobacco.

    abstract::Basic fibroblast growth factor (bFGF) is a multifunctional factor in acceleration of cell proliferation, differentiation and transference, and therefore widely used in clinical applications. In this study, expression vector pWX-Nt03 harboring a codon-optimized bFGF gene was constructed and introduced into the tobacco ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17010019

    authors: Wang YP,Wei ZY,Zhong XF,Lin CJ,Cai YH,Ma J,Zhang YY,Liu YZ,Xing SC

    更新日期:2015-12-23 00:00:00

  • Anti-Metastatic Effects of Antrodan with and without Cisplatin on Lewis Lung Carcinomas in a Mouse Xenograft Model.

    abstract::Antrodan, a unique protein-bound polysaccharide derived from the fungal mycelia of Antrodia cinnamomea, has been reported to exhibit antitumor and anti-metastatic effects on Lewis lung carcinoma (LLC) cells through direct action and immunomodulation in vitro. In this study, we investigated the combined treatment of an...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19061565

    authors: Chen PC,Chen CC,Ker YB,Chang CH,Chyau CC,Hu ML

    更新日期:2018-05-24 00:00:00

  • Inhibition of NADPH oxidase by apocynin attenuates progression of atherosclerosis.

    abstract::Of the multiple sources of reactive oxygen species (ROS) in the blood vessel, NADPH oxidases are the primary source. Whereas several studies have implicated NADPH oxidases in the initiation of atherosclerosis, their roles in disease progression are incompletely understood. Our objective was to determine the potential ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms140817017

    authors: Kinkade K,Streeter J,Miller FJ

    更新日期:2013-08-19 00:00:00

  • A Review: Proteomics in Nasopharyngeal Carcinoma.

    abstract::Although radiotherapy is generally effective in the treatment of major nasopharyngeal carcinoma (NPC), this treatment still makes approximately 20% of patients radioresistant. Therefore, the identification of blood or biopsy biomarkers that can predict the treatment response to radioresistance and that can diagnosis e...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms160715497

    authors: Chen ZT,Liang ZG,Zhu XD

    更新日期:2015-07-08 00:00:00

  • Platelet Proteasome Activity and Metabolism Is Upregulated during Bacterial Sepsis.

    abstract::Dysregulation of platelet function can contribute to the disease progression in sepsis. The proteasome represents a critical and vital element of cellular protein metabolism in platelets and its proteolytic activity has been associated with platelet function. However, the role of the platelet proteasome as well as its...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20235961

    authors: Grundler Groterhorst K,Mannell H,Pircher J,Kraemer BF

    更新日期:2019-11-27 00:00:00

  • Study on Thermal Decomposition Behaviors of Terpolymers of Carbon Dioxide, Propylene Oxide, and Cyclohexene Oxide.

    abstract::The terpolymerization of carbon dioxide (CO₂), propylene oxide (PO), and cyclohexene oxide (CHO) were performed by both random polymerization and block polymerization to synthesize the random poly (propylene cyclohexene carbonate) (PPCHC), di-block polymers of poly (propylene carbonate⁻cyclohexyl carbonate) (PPC-PCHC)...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19123723

    authors: Chen S,Xiao M,Sun L,Meng Y

    更新日期:2018-11-23 00:00:00

  • Kynurenine Aminotransferase Isozyme Inhibitors: A Review.

    abstract::Kynurenine aminotransferase isozymes (KATs 1-4) are members of the pyridoxal-5'-phosphate (PLP)-dependent enzyme family, which catalyse the permanent conversion of l-kynurenine (l-KYN) to kynurenic acid (KYNA), a known neuroactive agent. As KATs are found in the mammalian brain and have key roles in the kynurenine pat...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17060946

    authors: Nematollahi A,Sun G,Jayawickrama GS,Church WB

    更新日期:2016-06-15 00:00:00

  • Mouse Ataxin-2 Expansion Downregulates CamKII and Other Calcium Signaling Factors, Impairing Granule-Purkinje Neuron Synaptic Strength.

    abstract::Spinocerebellar ataxia type 2 (SCA2) is caused by polyglutamine expansion in Ataxin-2 (ATXN2). This factor binds RNA/proteins to modify metabolism after stress, and to control calcium (Ca2+) homeostasis after stimuli. Cerebellar ataxias and corticospinal motor neuron degeneration are determined by gain/loss in ATXN2 f...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21186673

    authors: Arsović A,Halbach MV,Canet-Pons J,Esen-Sehir D,Döring C,Freudenberg F,Czechowska N,Seidel K,Baader SL,Gispert S,Sen NE,Auburger G

    更新日期:2020-09-12 00:00:00

  • Dry Eye Disease and Tear Cytokine Levels-A Meta-Analysis.

    abstract::Background-It is recognized that inflammation is an underlying cause of dry eye disease (DED), with cytokine release involved. We systematically reviewed literature with meta-analyses to quantitatively summarize the levels of tear cytokines in DED. Methods-The PubMed, Embase, Web of Science, Ovid, Cochrane, and Scopus...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21093111

    authors: Roda M,Corazza I,Bacchi Reggiani ML,Pellegrini M,Taroni L,Giannaccare G,Versura P

    更新日期:2020-04-28 00:00:00

  • Differentiation of Adsorptive and Viscous Effects of Dietary Fibres on Bile Acid Release by Means of In Vitro Digestion and Dialysis.

    abstract::To explain the cholesterol-reducing effects of dietary fibres, one of the major mechanisms proposed is the reduced reabsorption of bile acids in the ileum. The interaction of dietary fibres with bile acids is associated with their viscous or adsorptive effects. Since these fibre characteristics are difficult to invest...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19082193

    authors: Naumann S,Schweiggert-Weisz U,Bader-Mittermaier S,Haller D,Eisner P

    更新日期:2018-07-27 00:00:00

  • Isolation and characterization of microsatellite loci for Hibiscus aridicola (Malvaceae), an endangered plant endemic to the dry-hot valleys of Jinsha River in Southwest China.

    abstract::Hibiscus aridicola (Malvaceae) is an endangered ornamental shrub endemic to the dry-hot valleys of Jinsha River in southwest China. Only four natural populations of H. aridicola exist in the wild according to our field investigation. It can be inferred that H. aridicola is facing a very high risk of extinction in the ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms12095698

    authors: Zhang L,Sun W,Wang Z,Guan K,Yang J

    更新日期:2011-01-01 00:00:00

  • A Parallel Biological Optimization Algorithm to Solve the Unbalanced Assignment Problem Based on DNA Molecular Computing.

    abstract::The unbalanced assignment problem (UAP) is to optimally resolve the problem of assigning n jobs to m individuals (m < n), such that minimum cost or maximum profit obtained. It is a vitally important Non-deterministic Polynomial (NP) complete problem in operation management and applied mathematics, having numerous real...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms161025338

    authors: Wang Z,Pu J,Cao L,Tan J

    更新日期:2015-10-23 00:00:00

  • Some Aspects of the Liquid Water Thermodynamic Behavior: From The Stable to the Deep Supercooled Regime.

    abstract::Liquid water is considered to be a peculiar example of glass forming materials because of the possibility of giving rise to amorphous phases with different densities and of the thermodynamic anomalies that characterize its supercooled liquid phase. In the present work, literature data on the density of bulk liquid wat...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21197269

    authors: Mallamace F,Mensitieri G,Mallamace D,Salzano de Luna M,Chen SH

    更新日期:2020-10-01 00:00:00

  • Estrogen Effects on Wound Healing.

    abstract::Wound healing is a physiological process, involving three successive and overlapping phases-hemostasis/inflammation, proliferation, and remodeling-to maintain the integrity of skin after trauma, either by accident or by procedure. Any disruption or unbalanced distribution of these processes might result in abnormal wo...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18112325

    authors: Horng HC,Chang WH,Yeh CC,Huang BS,Chang CP,Chen YJ,Tsui KH,Wang PH

    更新日期:2017-11-03 00:00:00

  • Role of Autophagy in Zinc Oxide Nanoparticles-Induced Apoptosis of Mouse LEYDIG Cells.

    abstract::Zinc oxide nanoparticles (ZnO NPs) have shown adverse health impact on the human male reproductive system, with evidence of inducing apoptosis. However, whether or not ZnO NPs could promote autophagy, and the possible role of autophagy in the progress of apoptosis, remain unclear. In the current study, in vitro and in...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20164042

    authors: Shen J,Yang D,Zhou X,Wang Y,Tang S,Yin H,Wang J,Chen R,Chen J

    更新日期:2019-08-19 00:00:00