Molecular genetic relationship of the 3' untranslated region among Thai dengue-3 virus, Bangkok isolates, during 1973-2000.

Abstract:

:Dengue virus serotype 3 (DENV-3) was associated with severe dengue epidemics in Thailand during 1973-1999. We studied Thai DENV-3 viruses isolated from hospitalized children in Bangkok with differing disease severity during that period. Viruses were sequenced at their 5' and 3' untranslated regions (UTRs), which are regions that play a pivotal role in viral replication. Our results indicated that the primary sequences as well as the secondary structures at both ends of Thai DENV-3 viruses were highly conserved over almost three decades. We found nucleotide insertions and deletions at the variable region (VR) that is located just downstream of the nonstructural protein 5 (NS5) stop codon among these viruses. The phylogenetic tree derived from the size heterogeneity of VR in the 3' UTR divided DENV-3 into four genotypes, and Thai DENV-3 viruses in this study belonged to genotype II. The replication efficiency of the candidate viruses with different lengths at the VR were assessed in the mosquito (C6/36) and human (HepG2) cell lines. Our results show that the viruses with nucleotide insertions at VR replicated better than the virus that contained deletions. Our findings indicate that Thai DENV-3 demonstrated a remarkable conservation of nucleotides over 28 years. Correlation with disease severity suggests that both primary sequences and secondary structures of the 3' UTR do not appear correlated with disease severity in humans.

journal_name

DNA Cell Biol

journal_title

DNA and cell biology

authors

Pankhong P,Weiner DB,Ramanathan MP,Nisalak A,Kalayanarooj S,Nimmannitya S,Attatippaholkun W

doi

10.1089/dna.2008.0835

subject

Has Abstract

pub_date

2009-10-01 00:00:00

pages

481-91

issue

10

eissn

1044-5498

issn

1557-7430

journal_volume

28

pub_type

杂志文章
  • Enhancement of the TCRζ expression, polyclonal expansion, and activation of t cells from patients with acute myeloid leukemia after IL-2, IL-7, and IL-12 induction.

    abstract::Defective T cell receptor (TCR) signaling resulting in lower T cell function plays a crucial role in the pathogenesis of T cell immunodeficiency in leukemia. Previous studies have indicated that lower TCRζ levels are a common characteristic of patients with leukemia, and upregulating TCRζ could partially recover T cel...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2015.2810

    authors: Shi L,Chen S,Zha X,Xu Y,Xu L,Yang L,Lu Y,Zhu K,Li Y

    更新日期:2015-07-01 00:00:00

  • Glandular kallikreins of the cotton-top tamarin: molecular cloning of the gene encoding the tissue kallikrein.

    abstract::The glandular kallikrein family is composed of structurally related serine proteases. Studies show that the mouse family encompasses at least 14 highly conserved functional genes, but of these only the tissue kallikarein has a human ortholog. In man, the tissue kallikrein display high sequence similarity with prostate...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454900750058080

    authors: Olsson AY,Persson AM,Valtonen-André C,Lundwall A

    更新日期:2000-12-01 00:00:00

  • Nutrigenomic Role of Acetate and β-Hydroxybutyrate in Bovine Mammary Epithelial Cells.

    abstract::Acetate and β-hydroxybutyrate (BHBA) are the predominant substrates for de novo fatty acid (FA) synthesis in mammary gland of dairy cow. To investigate the nutrigenomic role of acetate and BHBA in bovine mammary epithelial cells during milk fat production, RNA sequencing (RNA-seq) transcriptomic analysis was used to i...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2019.4783

    authors: Song S,Jiang M,Zhou J,Zhao F,Hou X,Lin Y

    更新日期:2020-03-01 00:00:00

  • Epigenetic reactivation of RANK in glioblastoma cells by curcumin: involvement of STAT3 inhibition.

    abstract::DNA methylation plays an essential role in carcinogenesis. Promoter hypermethylation can result in transcriptional silencing of specific genes, such as tumor suppressors. Thus far, few reports have investigated the effect of curcumin, an active component of the perennial herb Curcuma longa, on DNA methylation. In the ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2013.2042

    authors: Wu B,Yao X,Nie X,Xu R

    更新日期:2013-06-01 00:00:00

  • Characterization by cDNA cloning of the mRNA for seminalplasmin, the major basic protein of bull semen.

    abstract::A cDNA library derived from poly(A)+RNA of bull seminal vesicle tissue was screened with synthetic DNA probes specific for seminalplasmin (SAP), the major basic protein of bull semen. From a number of positive clones, pBSV12, containing a 577-bp insert, was identified and sequenced. The derived amino acid sequence com...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1990.9.437

    authors: Wagner S,Freudenstein J,Scheit KH

    更新日期:1990-07-01 00:00:00

  • Use of a two-hybrid system to identify mutations in Max that confer increased affinity for Myc.

    abstract::A yeast two-hybrid system was used to identify mutants of Max that exhibit an increased affinity for Myc. Truncated forms of the Max helix-loop-helix/leucine zipper motif (HLH/Zip) were first expressed in a two- hybrid system in which the bait protein was the HLH/Zip motif of Myc. Deletion of amino acids both amino-te...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.1277

    authors: Wang H,Van Den Bergh F,Spencer E,Wilcox K,Herman T

    更新日期:1997-11-01 00:00:00

  • Effects of plasmid DNA injection on cyclophosphamide-accelerated diabetes in NOD mice.

    abstract::Type 1 diabetes results in most cases from the destruction of insulin-secreting beta cells by the immune system. Several immunization methods based on administration of autoantigenic polypeptides such as insulin and glutamic acid decarboxylase (GAD) have been used to prevent autoimmune diabetes in the non-obese diabet...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454901300069022

    authors: Filippova M,Liu J,Escher A

    更新日期:2001-03-01 00:00:00

  • Regulation of cytokine-induced neutrophil chemoattractant (CINC) mRNA production in cultured rat cells.

    abstract::Rat cytokine-induced neutrophil chemoattractant (CINC) is an 8-kD polypeptide originally purified from media conditioned by interleukin-1 beta (IL-1 beta)-stimulated 52E, an epithelioid clone derived from the normal rat kidney (NRK) cell line. Using a fibroblastic clone of NRK cells, 49F, we found that lipopolysacchar...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1994.13.883

    authors: Dolecki GJ,Delarco JE

    更新日期:1994-09-01 00:00:00

  • Comparison of intestinal phospholipase A/lysophospholipase and sucrase-isomaltase genes suggest a common structure for enterocyte-specific promoters.

    abstract::Intestinal phospholipase A/lysophospholipase (IPAL) is an intestine-specific brush-border enzyme expressed during development and along the intestinal crypt-villus axis in a pattern similar to another well characterized brush-border enzyme, sucrase-isomaltase (SI). A tissue-specific DNase I hypersensitive site was ide...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.1419

    authors: Taylor JK,Boll W,Levy T,Suh E,Siang S,Mantei N,Traber PG

    更新日期:1997-12-01 00:00:00

  • Biodynamic modeling and simulation of multistage cell mutations.

    abstract::The aim of this study is to present a mathematical computer simulation model for multistage carcinogenesis. The population genetic model is developed based on the reaction diffusion, logistic behavior, and Hollings Type II interactions between normal, benign, and premalignant cells. The simple form of the Fisher-Halda...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2004.23.625

    authors: Ahangar R,Ali N,Iqbal K,Altmayer K

    更新日期:2004-10-01 00:00:00

  • Cloning and characterization of two human polyspecific organic cation transporters.

    abstract::Previously we cloned a polyspecific transporter from rat (rOCT1) that is expressed in renal proximal tubules and hepatocytes and mediates electrogenic uptake of organic cations with different molecular structures. Recently a homologous transporter from rat kidney (rOCT2) was cloned but not characterized in detail. We ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.871

    authors: Gorboulev V,Ulzheimer JC,Akhoundova A,Ulzheimer-Teuber I,Karbach U,Quester S,Baumann C,Lang F,Busch AE,Koepsell H

    更新日期:1997-07-01 00:00:00

  • Expression of the proto-oncogene Axl in renal cell carcinoma.

    abstract::In this investigation, we examined the role of the Axl proto-oncogene in renal cell carcinoma (RCC). Axl is a tyrosine kinase receptor implicated in myeloid leukogenesis, and has been found to be overexpressed in lung cancers and breast cancers. Axl has been described to act as a mitogenic factor along with its ligand...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/10445490360708946

    authors: Chung BI,Malkowicz SB,Nguyen TB,Libertino JA,McGarvey TW

    更新日期:2003-08-01 00:00:00

  • The transcriptional factor Egr-1 is synthesized by baculovirus-infected insect cells in an active, DNA-binding form.

    abstract::The Egr-1 (zfp-6) gene encodes a zinc-finger-containing nuclear protein that is rapidly and transiently induced in quiescent cells treated with mitogens. We have constructed baculovirus vectors that synthesize mouse Egr-1 protein initiating at two putative ATG start sites. The ATG site producing the larger protein (Mr...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1991.10.61

    authors: Ragona G,Edwards SA,Mercola DA,Adamson ED,Calogero A

    更新日期:1991-01-01 00:00:00

  • Plasmid insertional mutation may confer glucocorticoid responsiveness of cell growth.

    abstract::Culture of CHO.K1, a Chinese hamster ovary cell line, requires no particular care about the glucocorticoid level in media. Cell growth of CHO.K1 is little affected by dexamethasone at concentrations up to 3 microM. A clone of CHO.K1 stably transfected with an expression vector displayed a favored growth in dexamethaso...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1996.15.125

    authors: Chen GS,Lee CH,Lee YC,Chi CW,Liu YC

    更新日期:1996-02-01 00:00:00

  • BRCA1-Associated Protein-1 Suppresses Osteosarcoma Cell Proliferation and Migration Through Regulation PI3K/Akt Pathway.

    abstract::BRCA1-associated protein-1 (BAP1) is an important nuclear-localized deubiquitinating enzyme. Dysregulation of BAP1 has been reported in many types of cancers. However, there are few articles on the role of BAP1 in osteosarcoma (OS) and the molecular mechanisms of BAP1 in OS remain largely unknown. In this study, we ex...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2016.3579

    authors: Gao S,Sun H,Cheng C,Wang G

    更新日期:2017-05-01 00:00:00

  • Progressing from Recurring Tissue Injury to Genomic Instability: A New Mechanism of Neutrophil Pathogenesis.

    abstract::Aberrant neutrophil (PMN) infiltration of the intestinal mucosa is a hallmark of inflammatory bowel diseases, including Crohn's disease and ulcerative colitis. While the genotoxic function of PMNs and its implications in carcinogenesis have been primarily associated with oxidative stress, recent work by Butin-Israeli ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.2019.4842

    authors: Bui TM,Sumagin R

    更新日期:2019-08-01 00:00:00

  • Molecular cloning and baculovirus expression of the rabbit corneal aldehyde dehydrogenase (ALDH1A1) cDNA.

    abstract::Most mammalian species express high concentrations of ALDH3A1 in corneal epithelium with the exception of the rabbit, which expresses high amounts of ALDH1A1 rather than ALDH3A1. Several hypotheses that involve catalytic and/or structural functions have been postulated regarding the role of these corneal ALDHs. The ai...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454903322216671

    authors: Manzer R,Qamar L,Estey T,Pappa A,Petersen DR,Vasiliou V

    更新日期:2003-05-01 00:00:00

  • Transplacental transfer of a growth hormone-releasing hormone peptide from mother to fetus in the rat.

    abstract::Previous studies showed that when growth hormone-releasing hormone (GHRH) was administered to either pregnant rats or pigs as a plasmid-mediated therapy, pituitary weight, somatotroph and lactotroph numbers, and postnatal growth rate of the offspring increased. To determine if these responses resulted from direct effe...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2006.25.429

    authors: Fiorotto ML,Lopez R,Oliver WT,Khan AS,Draghia-Akli R

    更新日期:2006-08-01 00:00:00

  • Increased gene expression of a cytokine-related molecule and profilin after activation of Suberites domuncula cells with xenogeneic sponge molecule(s).

    abstract::Porifera (sponges) constitute the lowest metazoan phylum. Experiments examined whether sponges can recognize self/nonself molecules. Cells from the marine sponge Suberites domuncula were incubated with membranes from either S. domuncula or another marine sponge, Geodia cydonium, as well as with recombinant alpha-integ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454999314746

    authors: Müller WE,Perovic S,Wilkesman J,Kruse M,Müller IM,Batel R

    更新日期:1999-12-01 00:00:00

  • Induction of tetravalent protective immunity against four dengue serotypes by the tandem domain III of the envelope protein.

    abstract::In the present study, the domain IIIs of all four dengue virus (DENV) serotypes were connected sequentially to construct the tandem domain III. The resulting DNA fragment was then cloned into pBAD/Topo ThioFusion plasmid. After induction, the Escherichia coli expression protein was purified and used to immunize BALB/c...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2006.0547

    authors: Chen S,Yu M,Jiang T,Deng Y,Qin C,Qin E

    更新日期:2007-06-01 00:00:00

  • Functional dissection of the HNF-1alpha transcription factor: a study on nuclear localization and transcriptional activation.

    abstract::Hepatocyte nuclear factor-1alpha (HNF-1alpha) is a homeodomain-containing transcription factor regulating the expression of liver and pancreas-specific genes. Mutations in the HNF-1alpha-encoding gene TCF1 cause maturity-onset diabetes of the young, type 3 (MODY3). These mutations may affect nuclear import or reduce t...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2005.24.661

    authors: Bjørkhaug L,Bratland A,Njølstad PR,Molven A

    更新日期:2005-11-01 00:00:00

  • Expression Analysis and Regulation Network Identification of the CONSTANS-Like Gene Family in Moso Bamboo (Phyllostachys edulis) Under Photoperiod Treatments.

    abstract::CONSTANS (CO)/CONSTANS-like (COL) genes that have been studied in annual model plants such as Arabidopsis thaliana and Oryza sativa play key roles in the photoperiodic flowering pathway. Moso bamboo is a perennial plant characterized by a long vegetative stage and flowers synchronously followed by widespread death. Ho...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4611

    authors: Liu J,Cheng Z,Li X,Xie L,Bai Y,Peng L,Li J,Gao J

    更新日期:2019-07-01 00:00:00

  • Retinol in avian oogenesis: molecular properties of the carrier protein.

    abstract::Normal embryo development in oviparous (egg-laying) species requires the coordinated targeting to growing oocytes of nutrients and regulatory molecules such as retinol, the precursor of active retinoids. Serum retinol-binding protein (RBP) is the major carrier protein for retinol in the circulatory system of vertebrat...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1995.14.403

    authors: Vieira AV,Kuchler K,Schneider WJ

    更新日期:1995-05-01 00:00:00

  • Functional variants in NOS1 and NOS2A are not associated with progressive hearing loss in Ménière's disease in a European Caucasian population.

    abstract::Hearing loss in Ménière's disease (MD) is associated with loss of spiral ganglion neurons and hair cells. In a guinea pig model of endolymphatic hydrops, nitric oxide synthases (NOS) and oxidative stress mediate loss of spiral ganglion neurons. To test the hypothesis that functional variants of NOS1 and NOS2A are asso...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1259

    authors: Gazquez I,Lopez-Escamez JA,Moreno A,Campbell CA,Meyer NC,Carey JP,Minor LB,Gantz BJ,Hansen MR,Della Santina CC,Aran I,Soto-Varela A,Santos S,Batuecas A,Perez-Garrigues H,Lopez-Nevot A,Smith RJ,Lopez-Nevot MA

    更新日期:2011-09-01 00:00:00

  • Demethylation of ERV3, an endogenous retrovirus regulating the Krüppel-related zinc finger gene H-plk, in several human cell lines arrested during early monocyte development.

    abstract::The activation of H-plk (Human-proviral linked Krüppel), a human Krüppel-related zinc finger gene in organs such as placenta, adrenal cortex, and testis, is probably due to insertion of an endogenous retrovirus, ERV3, upstream of the gene. Several differently spliced transcripts originate from this locus, e.g., a tran...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1998.17.27

    authors: Abrink M,Larsson E,Hellman L

    更新日期:1998-01-01 00:00:00

  • Mining Prognostic Biomarkers of Hepatocellular Carcinoma Based on Immune-Associated Genes.

    abstract::This research aims to investigate the immune-associated gene signature from databases to improve the prognostic value in hepatocellular carcinoma (HCC) by multidimensional methods using various bioinformatic methods. Fifty-one immune-associated genes were mined out, which were associated with clinical characters throu...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.2019.5099

    authors: Chen W,Tang D,Ou M,Dai Y

    更新日期:2020-04-01 00:00:00

  • Prognostic Role of microRNA-205 in Human Gynecological Cancer: A Meta-Analysis of Fourteen Studies.

    abstract::Several studies have revealed that miR-205 plays important roles in the development of gynecological cancers and thus may serve as a potential prognostic biomarker, but the current conclusions remain controversial. Therefore, the goal of this study was to explore the prognostic significance and functional mechanisms o...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,meta分析

    doi:10.1089/dna.2019.5316

    authors: Wu Z,Tang H,Xiong Q,Liu D,Xia T,Liang H,Ye Q

    更新日期:2020-05-01 00:00:00

  • Association between single-nucleotide polymorphisms in pre-miRNAs and the risk of asthma in a Chinese population.

    abstract::Single-nucleotide polymorphisms (SNPs) in pre-miRNAs may alter microRNA (miRNA) expression levels or processing and contribute to susceptibility to a wide range of diseases. We investigated the correlation between four SNPs (rs11614913, rs3746444, rs2910164, and rs229283) in pre-miRNAs and the risk of asthma in 220 as...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2010.1164

    authors: Su XW,Yang Y,Lv ML,Li LJ,Dong W,Miao-Liao,Gao LB,Luo HB,Yun-Liu,Cong RJ,Liang WB,Li YB

    更新日期:2011-11-01 00:00:00

  • The UDP glucuronosyltransferase gene superfamily: suggested nomenclature based on evolutionary divergence.

    abstract::A nomenclature system for the UDP glucuronosyltransferase superfamily is proposed, based on divergent evolution of the genes. A total of 26 distinct cDNAs in five mammalian species have been sequenced to date. Comparison of the deduced amino acid sequences leads to the definition of two families and a total of three s...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.1991.10.487

    authors: Burchell B,Nebert DW,Nelson DR,Bock KW,Iyanagi T,Jansen PL,Lancet D,Mulder GJ,Chowdhury JR,Siest G

    更新日期:1991-09-01 00:00:00

  • Molecular cloning and transcriptional mapping of the mouse cellular retinoic acid-binding protein gene.

    abstract::The gene encoding the mouse cellular retinoic acid-binding protein (CRABP) has been isolated from a mouse genomic library and its structure has been determined. This gene spans approximately 10.5 kb and consists of four exons encoding 24, 59, 38, and 16 amino acid residues, respectively. This gene structure is very si...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1990.9.471

    authors: Wei LN,Tsao JL,Chu YS,Jeannotte L,Nguyen-Huu MC

    更新日期:1990-09-01 00:00:00