Expression and biochemical characterization of the periplasmic domain of bacterial outer membrane porin TdeA.

Abstract:

:TolC is an outer membrane porin protein and an essential component of drug efflux and type-I secretion systems in Gram-negative bacteria. TolC comprises a periplasmic alpha- helical barrel domain and a membrane-embedded beta-barrel domain. TdeA, a functional and structural homolog of TolC, is required for toxin and drug export in the pathogenic oral bacterium Actinobacillus actinomycetemcomitans. Here, we report the expression of the periplasmic domain of TdeA as a soluble protein by substitution of the membraneembedded domain with short linkers, which enabled us to purify the protein in the absence of detergent. We confirmed the structural integrity of the TdeA periplasmic domain by size-exclusion chromatography, circular dichroism spectroscopy, and electron microscopy, which together showed that the periplasmic domain of the TolC protein family can fold correctly on its own. We further demonstrated that the periplasmic domain of TdeA interacts with peptidoglycans of the bacterial cell wall, which supports the idea that completely folded TolC family proteins traverse the peptidoglycan layer to interact with inner membrane transporters.

journal_name

J Microbiol Biotechnol

authors

Kim S,Yum S,Jo WS,Lee BL,Jeong MH,Ha NC

subject

Has Abstract

pub_date

2008-05-01 00:00:00

pages

845-51

issue

5

eissn

1017-7825

issn

1738-8872

pii

7364

journal_volume

18

pub_type

杂志文章
  • Homology modeling and docking studies of Streptomyces peucetius CYP147F1 as limonene hydroxylase.

    abstract::Homology modeling of Streptomyces peucetius CYP147F1 was constructed using three cytochrome P450 structures, CYP107L1, CYPVdh, and CYPeryF, as templates. The lowest energy SPCYP147F1 model was then assessed for stereochemical quality and side-chain environment by Accelrys Discovery Studio 3.1 software. Further actives...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1112.12053

    authors: Bhattarai S,Liou K,Oh TJ

    更新日期:2012-07-01 00:00:00

  • Preparation and Antioxidant Activities In Vitro of a Designed Antioxidant Peptide from Pinctada fucata by Recombinant Escherichia coli.

    abstract::An antioxidant peptide derived from Pinctada fucata meat using an Alcalase2.4L enzymatic hydrolysis method (named AOP) and identified by LC-TOF-MS has promising clinical potential for generating cosmetic products that protect skin from sunshine. To date, there have been few published studies investigating the structur...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1708.08032

    authors: Wu Y,Ma Y,Li L,Yang X

    更新日期:2018-01-28 00:00:00

  • Simple purification of human antimicrobial peptide dermcidin (MDCD-1L) by intein-mediated expression in E.coli.

    abstract::Among human antimicrobial peptides (hAMPs), DCD-1L has a broad spectrum of antimicrobial activity over a wide pH range and in high salt concentrations. It offers a promising alternative to conventional antibiotics. The 458-bp-long dermcidin cDNA was amplified by PCR using a human fetal cDNA library as a template. The ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Hong I,Kim YS,Choi SG

    更新日期:2010-02-01 00:00:00

  • A Combination Strategy for Construction of Peptide-β2m-H-2Kb Single Chain with Overlap Extension PCR and One-Step Cloning.

    abstract::The time-consuming and high-cost preparation of soluble peptide-major histocompatibility complexes (pMHC) currently limits their wide uses in monitoring antigen-specific T cells. The single-chain trimer (SCT) of peptide-β2m-MHC class I heavy chain was developed as an alternative strategy, but its gene fusion is hinder...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1606.06038

    authors: Xu T,Li X,Wu Y,Shahzad KA,Wang W,Zhang L,Shen C

    更新日期:2016-12-28 00:00:00

  • Protection of Radiation-Induced DNA Damage by Functional Cosmeceutical Poly-Gamma-Glutamate.

    abstract::This study compared the radioprotective effects of high-molecular-weight poly-gamma-glutamate (γ-PGA, average molecular mass 3,000 kDa) and a reduced form of glutathione (GSH, a known radioprotector) on calf thymus DNA damage. The radiation-induced DNA damage was measured on the basis of the decreased fluorescence int...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1712.12016

    authors: Oh YJ,Kwak MS,Sung MH

    更新日期:2018-04-28 00:00:00

  • Cold-adapted and rhizosphere-competent strain of Rahnella sp. with broad-spectrum plant growth-promotion potential.

    abstract::A phosphate-solubilizing bacterial strain isolated from Hippophae rhamnoides rhizosphere was identified as Rahnella sp. based on its phenotypic features and 16S rRNA gene sequence. The bacterial strain showed the growth characteristics of a cold-adapted psychrotroph, with the multiple plant growth-promoting traits of ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Vyas P,Joshi R,Sharma KC,Rahi P,Gulati A,Gulati A

    更新日期:2010-12-01 00:00:00

  • Proteomic analysis of the oxidative stress response induced by low-dose hydrogen peroxide in Bacillus anthracis.

    abstract::Anthrax is a bacterial disease caused by the aerobic sporeforming bacterium Bacillus anthracis, which is an important pathogen owing to its ability to be used as a terror agent. B. anthracis spores can escape phagocytosis and initiate the germination process even in antimicrobial conditions, such as oxidative stress. ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1209.09070

    authors: Kim SH,Kim SK,Jung KH,Kim YK,Hwang HC,Ryu SG,Chai YG

    更新日期:2013-06-28 00:00:00

  • Application of the rpoS gene for species-specific detection of Vibrio vulnificus by real-time PCR.

    abstract::Vibrio vulnificus is a causative agent of serious diseases in humans, resulting from the contact of wound with seawater or consumption of raw seafood. Several studies aimed at detecting V. vulnificus have targeted vvh as a representative virulence toxin gene belonging to the bacterium. In this study, we targeted the r...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0800.176

    authors: Kim DG,Ahn SH,Kim LH,Park KJ,Hong YK,Kong IS

    更新日期:2008-11-01 00:00:00

  • Immune Enhancement Effects of Codium fragile Anionic Macromolecules Combined with Red Ginseng Extract in Immune-Suppressed Mice.

    abstract::Codium fragile is an edible seaweed in Asian countries that has been used as a thrombolytic, anticoagulant, antioxidant, anti-inflammatory, and immune-stimulatory agent. Ginseng has also been known to maintain immune homeostasis and to regulate the immune system via enhancing resistance to diseases and microorganisms....

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1905.05017

    authors: Kim JE,Monmai C,Rod-In W,Jang AY,You SG,Lee SM,Park WJ

    更新日期:2019-09-28 00:00:00

  • Optimized substrate concentrations for production of long-chain isomaltooligosaccharides using dextransucrase of Leuconostoc mesenteroides B-512F.

    abstract::Isomaltooligosaccharide (IMO) is a promising dietary component with prebiotic effect, and the long-chain IMOs are preferred to short chain ones owing to the longer persistence in the colon. To establish the optimal process for synthesis of long-chain IMOs, we systematically examined the reaction condition of dextransu...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Lee MS,Cho SK,Eom HJ,Kim SY,Kim TJ,Han NS

    更新日期:2008-06-01 00:00:00

  • Development of predictive mathematical model for the growth kinetics of Staphylococcus aureus by response surface model.

    abstract::A response surface model was developed for predicting the growth rates of Staphylococcus aureus in tryptic soy broth (TSB) medium as a function of combined effects of temperature, pH, and NaCl. The TSB containing six different concentrations of NaCl (0, 2, 4, 6, 8, and 10%) was adjusted to an initial of six different ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Seo KY,Heo SK,Lee C,Chung DH,Kim MG,Lee KH,Kim KS,Bahk GJ,Bae DH,Kim KY,Kims CH,Ha SD

    更新日期:2007-09-01 00:00:00

  • Expression of HpaGXooc protein in Bacillus subtilis and its biological functions.

    abstract::HpaGXooc, from rice pathogenic bacterium Xanthomonas oryzae pv. oryzicola, is a member of the harpin group of proteins, eliciting hypersensitive cell death in non-host plants, inducing disease and insect resistance in plants, and enhancing plant growth. To express and secret the HpaGXooc protein in Bacillus subtilis, ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0802.154

    authors: Wu H,Wang S,Qiao J,Liu J,Zhan J,Gao X

    更新日期:2009-02-01 00:00:00

  • NaCl concentration-dependent aminoglycoside resistance of Halomonas socia CKY01 and identification of related genes.

    abstract::Among various species of marine bacteria, those belonging to the genus Halomonas have several promising applications and have been studied well. However, there was not much information on antibiotic resistance of Halomonas species. As an effort to find antibiotic resistance of Halomonas socia CKY01, which showed produ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2009.09017

    authors: Park YL,Choi TR,Kim HJ,Song HS,Lee HS,Park SL,Lee SM,Kim SH,Park S,Bhatia SK,Gurav R,Sung C,Seo SO,Yang YH

    更新日期:2020-11-04 00:00:00

  • Alternative Carcinogenicity Screening Assay Using Colon Cancer Stem Cells: A Quantitative PCR (qPCR)-Based Prediction System for Colon Carcinogenesis.

    abstract::The carcinogenicity of chemicals in the environment is a major concern. Recently, numerous studies have attempted to develop methods for predicting carcinogenicity, including rodent and cell-based approaches. However, rodent carcinogenicity tests for evaluating the carcinogenic potential of a chemical to humans are ti...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1712.12043

    authors: Bak Y,Jang HJ,Shin JW,Kim SJ,Chun HW,Seo JH,No SH,Chae JI,Son DH,Lee SY,Hong J,Yoon DY

    更新日期:2018-04-28 00:00:00

  • Optimal Temperature and Light Intensity for Improved Mixotrophic Metabolism of Chlorella sorokiniana Treating Livestock Wastewater.

    abstract::Mixotrophic microalgal growth gives a great premise for wastewater treatment based on photoautotrophic nutrient utilization and heterotrophic organic removal while producing renewable biomass. There remains a need for a control strategy to enrich them in a photobioreactor. This study performed a series of batch experi...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1707.07007

    authors: Lee TH,Jang JK,Kim HW

    更新日期:2017-11-28 00:00:00

  • Deciphering Diversity Indices for a Better Understanding of Microbial Communities.

    abstract::The past decades have been a golden era during which great tasks were accomplished in the field of microbiology, including food microbiology. In the past, culture-dependent methods have been the primary choice to investigate bacterial diversity. However, using cultureindependent high-throughput sequencing of 16S rRNA ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.4014/jmb.1709.09027

    authors: Kim BR,Shin J,Guevarra R,Lee JH,Kim DW,Seol KH,Lee JH,Kim HB,Isaacson R

    更新日期:2017-12-28 00:00:00

  • Fermented Soymilk Alleviates Lipid Accumulation by Inhibition of SREBP-1 and Activation of NRF-2 in the Hepatocellular Steatosis Model.

    abstract::Ingredients of soy and fermented soy products have been widely utilized as food supplements for health-enhancing properties. The aim of this study was to evaluate the effects of fermented soymilk (FSM) and soymilk (SM) on free fatty acid-induced lipogenesis in the hepatocellular steatosis model. HepG2 cells were incub...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1707.07061

    authors: Ahn SB,Wu WH,Lee JH,Jun DW,Kim J,Kim R,Lee TB,Jun JH

    更新日期:2018-02-28 00:00:00

  • Improved methodology for identification of cryptomonads: combining light microscopy and PCR amplification.

    abstract::Cryptomonads are unicellular, biflagellate algae. Generally, cryptomonad cells cannot be preserved well because of their fragile nature, and an improved methodology should be developed to identify cryptomonads from natural habitats. In this study, we tried using several cytological fixatives, including glutaraldehyde,...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1203.03057

    authors: Xia S,Cheng Y,Zhu H,Liu G,Hu Z

    更新日期:2013-03-01 00:00:00

  • A Synergy Effect of Trisodium Phosphate and Ethanol on Inactivation of Murine Norovirus 1 on Lettuce and Bell Pepper.

    abstract::The synergy effect of trisodium phosphate (TSP) and ethanol against murine norovirus 1 (MNV-1), as a surrogate for human noroviruses, on fresh produces was evaluated. More than 2% (w/v) of TSP effectively inactivated MNV-1. The single treatment of 1% TSP or 30% ethanol for 30 min was not effective on MNV-1; however, c...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1503.03032

    authors: Kim EJ,Lee YD,Kim KY,Park JH

    更新日期:2015-12-28 00:00:00

  • Synthetic Coprisin analog peptide, D-CopA3 has antimicrobial activity and pro-apoptotic effects in human leukemia cells.

    abstract::Recently, we reported that the synthetic Coprisin analog peptide 9-mer dimer CopA3 (consisted of all-L amino acid sequence) was designed based on a defensin-like peptide, Coprisin isolated from Copris tripartitus. The 9-mer dimer CopA3 (L-CopA3) had antibacterial activity and induced apoptosis in human leukemia cells ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1110.10071

    authors: Kim SJ,Kim IW,Kwon YN,Yun EY,Hwang JS

    更新日期:2012-02-01 00:00:00

  • Differential Impacts on Bacterial Composition and Abundance in Rhizosphere Compartments between Al-Tolerant and Al-Sensitive Soybean Genotypes in Acidic Soil.

    abstract::In this study, two soybean genotypes i.e. aluminum-tolerant Baxi 10 (BX10) and aluminum-sensitive Bendi 2 (BD2) were used as plant materials and the acidic red soil was used as growth medium. The soil layers from the inside to the outside of the root are: rhizospheric soil after washing (WRH), rhizospheric soil after ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2003.03018

    authors: Wen ZL,Yang MK,Fazal A,Liao YH,Cheng LR,Hua XM,Hu DQ,Shi JS,Yang RW,Lu GH,Qi JL,Hong Z,Qian QP,Yang YH

    更新日期:2020-08-28 00:00:00

  • An Improved Approach to Identify Bacterial Pathogens to Human in Environmental Metagenome.

    abstract::The identification of bacterial pathogens to humans is critical for environmental microbial risk assessment. However, current methods for identifying pathogens in environmental samples are limited in their ability to detect highly diverse bacterial communities and accurately differentiate pathogens from commensal bact...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2005.05033

    authors: Yang J,Howe A,Lee J,Yoo K,Park J

    更新日期:2020-09-28 00:00:00

  • Efficient (3R)-Acetoin Production from meso-2,3-Butanediol Using a New Whole-Cell Biocatalyst with Co-Expression of meso-2,3-Butanediol Dehydrogenase, NADH Oxidase, and Vitreoscilla Hemoglobin.

    abstract::Acetoin (AC) is a volatile platform compound with various potential industrial applications. AC contains two stereoisomeric forms: (3S)-AC and (3R)-AC. Optically pure AC is an important potential intermediate and widely used as a precursor to synthesize novel optically active materials. In this study, chiral (3R)-AC p...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1608.08063

    authors: Guo Z,Zhao X,He Y,Yang T,Gao H,Li G,Chen F,Sun M,Lee JK,Zhang L

    更新日期:2017-01-28 00:00:00

  • A New Approach to Produce Resveratrol by Enzymatic Bioconversion.

    abstract::An enzymatic reaction system was developed and optimized for bioconversion of resveratrol from glucose. Liquid enzyme extracts were prepared from Alternaria sp. MG1, an endophytic fungus from grape, and used directly or after immobilization with sodium alginate. When the enzyme solution was used, efficient production ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1512.12084

    authors: Che J,Shi J,Gao Z,Zhang Y

    更新日期:2016-08-28 00:00:00

  • The Inhibitory Effect of Gut Microbiota and Its Metabolites on Colorectal Cancer.

    abstract::Colorectal cancer (CRC) is regarded as one of the most common and deadly forms of cancer. Gut microbiota is vital to retain and promote several functions of intestinal. Although previous researches have shown that some gut microbiota have the abilities to inhibit tumorigenesis and prevent cancer from progressing, they...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.4014/jmb.2002.02032

    authors: Chen C,Li H

    更新日期:2020-11-28 00:00:00

  • Selective production of epothilone B by heterologous expression of propionyl-CoA synthetase in Sorangium cellulosum.

    abstract::The metabolic engineering of epothilones, as secondary metabolites, was investigated using Sorangium cellulosum to achieve the selective production of epothilone B, a potent anticancer agent. Thus, the propionyl-CoA synthetase gene (prpE) from Ralstonia solanacearum was heterologously expressed in S. cellulosum to inc...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Han SJ,Park SW,Park BW,Sim SJ

    更新日期:2008-01-01 00:00:00

  • Real-Time Monitoring of Catheter-Related Biofilm Infection in Mice.

    abstract::This study was done to establish a mouse model for catheter-related biofilm infection suitable to bioluminescence imaging (BLI). Biofilm formation of Pseudomonas aeruginosa (P. aeruginosa) Xen5 grown on catheter disks in vitro and in an implanted mouse model was real-time monitored during a 7-day study period using BL...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1502.02057

    authors: Liu X,Yin H,Xu X,Cheng Y,Cai Y,Wang R

    更新日期:2015-10-01 00:00:00

  • Comparison of the Virulence-Associated Phenotypes of Five Species of Acinetobacter baumannii Complex.

    abstract::In this study, we compared the virulence-associated factors of Acinetobacter baumannii complex species. Sixty-three isolates of five A. baumannii complex species, including 19 A. baumannii, 15 A. nosocomialis, 13 A. seifertii, 13 A. pittii, and 3 A. calcoaceticus isolates, were included in this study. For all isolates...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1507.07076

    authors: Na IY,Chung ES,Jung CY,Kim DH,Shin J,Kang K,Kim ST,Ko KS

    更新日期:2016-01-01 00:00:00

  • A Bioactive Fraction from Streptomyces sp. Enhances Maize Tolerance against Drought Stress.

    abstract::Drought stress is threatening the growth and productivity of many economical crops. Therefore, it is necessary to establish innovative and efficient approaches for improving crop growth and productivity. Here we investigated the potentials of the cell-free extract of Actinobacteria (Ac) isolated from a semi-arid habit...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2003.03034

    authors: Warrad M,Hassan YM,Mohamed MSM,Hagagy N,Al-Maghrabi OA,Selim S,Saleh AM,AbdElgawad H

    更新日期:2020-08-28 00:00:00

  • Nitrospira community composition in nitrifying reactors operated with two different dissolved oxygen levels.

    abstract::Nitrospira is a dominant member of nitrite-oxidizing bacteria (NOB) in nitrifying bioreactors as well as in natural habitats. In this study, Nitrospira NOB were investigated in the two nitrifying reactors operated with high and low dissolved oxygen (DO) concentrations for a period of 300 days. Phylogenetic and termina...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Park HD,Noguera DR

    更新日期:2008-08-01 00:00:00