Hydrogen peroxide-induced cell death in Arabidopsis: transcriptional and mutant analysis reveals a role of an oxoglutarate-dependent dioxygenase gene in the cell death process.

Abstract:

:Hydrogen peroxide is a major regulator of plant programmed cell death (PCD) but little is known about the downstream genes from the H(2)O(2)-signaling network that mediate the cell death. To address this question, a novel system for studying H(2)O(2)-induced programmed cell death in Arabidopsis thaliana was used. The catalase inhibitor aminotriazole (AT) reduced the catalase activity and caused endogenous accumulation of hydrogen peroxide that eventually triggered cell death. Microarray analysis with a DNA chip representing 21500 genes and subsequent comparison with other PCD-related expression studies revealed a set of new H(2)O(2)-responsive genes that were highly regulated in a common fashion during different types of PCD. These included an oxoglutarate-dependent dioxygenase and various oxidoreductases, the transcription factors Zat11, WRKY75 and NAM, proteasomal components, a heterologous group of genes with diverse functions, and genes encoding proteins with unknown functions. Knockout lines of the oxoglutarate-dependent dioxygenase exhibited significantly reduced death symptoms and chlorophyll loss upon H(2)O(2)-induced cell death, indicating a role for this gene in the cell death network.

journal_name

IUBMB Life

journal_title

IUBMB life

authors

Gechev TS,Minkov IN,Hille J

doi

10.1080/15216540500090793

keywords:

subject

Has Abstract

pub_date

2005-03-01 00:00:00

pages

181-8

issue

3

eissn

1521-6543

issn

1521-6551

pii

Q0XQ0386724R0847

journal_volume

57

pub_type

杂志文章
  • Nitric oxide, S-nitrosation, and endothelial permeability.

    abstract::S-Nitrosation is rapidly emerging as a regulatory mechanism in vascular biology, with particular importance in the onset of hyperpermeability induced by pro-inflammatory agents. This review focuses on the role of endothelial nitric oxide synthase (eNOS)-derived nitric oxide (NO) in regulating S-Nitrosation of adherens...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1002/iub.1204

    authors: Durán WN,Beuve AV,Sánchez FA

    更新日期:2013-10-01 00:00:00

  • Methanococcus vannielii selenium metabolism: purification and N-terminal amino acid sequences of a novel selenium-binding protein and selenocysteine lyase.

    abstract::Selenium is an essential component of several enzymes and proteins in a number of methane-producing archae. Information concerning accessory proteins that function in selenium transport processes, however, is limited. A novel selenium-binding protein with a potential transport role and a selenocysteine lyase that serv...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1080/15216540400008911

    authors: Stadtman T

    更新日期:2004-07-01 00:00:00

  • Association of the glucocorticoid receptor with STAT3, C/EBPbeta, and the hormone-responsive element within the rat haptoglobin gene promoter during the acute phase response.

    abstract::Upregulation of haptoglobin (Hp) expression in the rat during the acute phase (AP) response is the result of synergistic effects of IL-6-, IL-1beta-, and corticosterone-activated signaling pathways. IL-6 signaling terminates in cis-trans interactions of the Hp gene hormone-responsive element (HRE) with transcription f...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.313

    authors: Arambasić J,Poznanović G,Ivanović-Matić S,Bogojević D,Mihailović M,Uskoković A,Grigorov I

    更新日期:2010-03-01 00:00:00

  • LncRNA UCA1 impacts cell proliferation, invasion, and migration of pancreatic cancer through regulating miR-96/FOXO3.

    abstract::This study was expected to reveal the regulatory effects of lncRNA UCA1 on pancreatic cancer cell progression through targeting miR-96/FOXO3. Microarray analysis was carried out on 36 cases of pancreatic cancer tissues and 16 cases of adjacent tissues among them. Expression levels of lncRNA UCA1, miR-96, and FOXO3 in ...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1699

    authors: Zhou Y,Chen Y,Ding W,Hua Z,Wang L,Zhu Y,Qian H,Dai T

    更新日期:2018-04-01 00:00:00

  • Elevated microRNA-20b-3p and reduced thioredoxin-interacting protein ameliorate diabetic retinopathy progression by suppressing the NLRP3 inflammasomes.

    abstract::Over the years, microRNA-20b-3p (miR-20b-3p) has been found to play an essential role in human diseases; we aimed to investigate the effect of miR-20b-3p on the progression of diabetic retinopathy (DR). The DR rat models were established by streptozotocin injection and treated with miR-20b-3p mimics, silenced, or over...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.2267

    authors: Wang S,Du S,Lv Y,Wang W,Zhang F

    更新日期:2020-07-01 00:00:00

  • Bacterial wobble modifications of NNA-decoding tRNAs.

    abstract::Nucleotides of transfer RNAs (tRNAs) are highly modified, particularly at the anticodon. Bacterial tRNAs that read A-ending codons are especially notable. The U34 nucleotide canonically present in these tRNAs is modified by a wide range of complex chemical constituents. An additional two A-ending codons are not read b...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1002/iub.2120

    authors: Nilsson EM,Alexander RW

    更新日期:2019-08-01 00:00:00

  • Molecular control of cell differentiation and programmed cell death during digit development.

    abstract::During the hand plate development, the processes of cell differentiation and control of cell death are relevant to ensure a correct shape of the limb. The progenitor cell pool that later will differentiate into cartilage to form the digits arises from undifferentiated mesenchymal cells beneath the apical ectodermal ri...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1002/iub.563

    authors: Chimal-Monroy J,Abarca-Buis RF,Cuervo R,Díaz-Hernández M,Bustamante M,Rios-Flores JA,Romero-Suárez S,Farrera-Hernández A

    更新日期:2011-10-01 00:00:00

  • Aberrant methylation of APC and RARβ2 genes in breast cancer patients.

    abstract::Changes in the status of DNA methylation are one of the most common molecular alterations in human neoplasia. We aimed to identify epigenetic molecular markers in serum for early detection of breast cancer. Authors analyzed retrospectively the methylation status of RARβ2 and APC genes in serum samples from 121 breast ...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1346

    authors: Swellam M,Abdelmaksoud MD,Sayed Mahmoud M,Ramadan A,Abdel-Moneem W,Hefny MM

    更新日期:2015-01-01 00:00:00

  • Impairment of homeostasis in lysosomal storage disorders.

    abstract::Lysosomal storage disorders (LSDs) are inherited metabolic diseases caused by deficiencies in lysosomal proteins, which result in accumulation of undegraded metabolites and disruption of lysosomal proteostasis. Despite significant progress in the molecular genetics and biochemistry underlying the cellular pathogenesis...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1002/iub.1288

    authors: Segatori L

    更新日期:2014-07-01 00:00:00

  • Tracing the structure-function relationship of neuroglobin and cytoglobin using resonance Raman and electron paramagnetic resonance spectroscopy.

    abstract::The physiological role of neuroglobin and cytoglobin, two vertebrate globins discovered in the last 5 years, is not yet clearly understood. In this work, we review the structural information on these globins and its implication on the possible protein function, obtained by electron paramagnetic resonance and resonance...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1080/15216540500037877

    authors: Van Doorslaer S,Vinck E,Trandafir F,Ioanitescu I,Dewilde S,Moens L

    更新日期:2004-11-01 00:00:00

  • Duchenne and Becker muscular dystrophy: from gene diagnosis to molecular therapy.

    abstract::Duchenne and Becker muscular dystrophy (DMD/BMD) are X-linked muscular dystrophies. The isolation of the defective gene in DMD/BMD has led to a better understanding of the disease process and has promoted studies regarding the application of molecular therapy. The purpose of this review is to present the progress made...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1080/15216540212333

    authors: Matsuo M

    更新日期:2002-03-01 00:00:00

  • Ischemia and reperfusion related myocardial inflammation: A network of cells and mediators targeting the cardiomyocyte.

    abstract::Occlusion of a coronary artery if maintained for longer period of time results in damage of the cardiac tissue. However, restoration of blood flow to previously ischemic tissue can itself induce further cardiac damage, a phenomenon known as myocardial reperfusion injury. Cardiac homoeostasis is supported by a network ...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1002/iub.1352

    authors: Rohrbach S,Troidl C,Hamm C,Schulz R

    更新日期:2015-02-01 00:00:00

  • Lack of miR-1246 in small extracellular vesicle blunts tumorigenesis of laryngeal carcinoma cells by regulating Cyclin G2.

    abstract::Small extracellular vesicle (sEV) has precise impacts on tumor microenvironment and play vital functions in intercellular interaction. However, the functional role of sEV miRNA on laryngeal squamous cell carcinoma (LSCC) is largely unresolved. Here, the expression of miR-1246 in LSCC tissues and plasma sEV was examine...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.2274

    authors: Huang Q,Hsueh CY,Guo Y,Wu XF,Li JY,Zhou L

    更新日期:2020-07-01 00:00:00

  • Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.

    abstract::In protein and RNA macromolecules, only a limited number of different side-chain chemical groups are available to function as catalysts. The myriad of enzyme-catalyzed reactions results from the ability of most of these groups to function either as nucleophilic, electrophilic, or general acid-base catalysts, and the k...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1080/15216540211468

    authors: Harris TK,Turner GJ

    更新日期:2002-02-01 00:00:00

  • Calcium-sensing receptor inhibits TGF-β-signaling by decreasing Smad2 phosphorylation.

    abstract::Calcium-sensing receptor (CaSR) contributes to maintain homeostatic levels of extracellular calcium. In addition, CaSR controls other cellular activities such as proliferation and migration, particularly in cells not related to extracellular calcium homeostasis, potentially by cross-talking with parallel signaling pat...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1232

    authors: Organista-Juárez D,Carretero-Ortega J,Vicente-Fermín O,Vázquez-Victorio G,Sosa-Garrocho M,Vázquez-Prado J,Macías-Silva M,Reyes-Cruz G

    更新日期:2013-12-01 00:00:00

  • Diagnostic evaluation of apoptosis inhibitory gene and tissue inhibitor matrix metalloproteinase-2 in patients with bladder cancer.

    abstract::Bladder carcinoma is an important worldwide health problem. Both cystoscopy and urine cytology used in detecting bladder cancer suffer from drawbacks where cystoscopy is an invasive method and urine cytology shows low sensitivity in low-grade tumors. This study validates easier and less time-consuming techniques for t...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.325

    authors: Eissa S,Shabayek MI,Ismail MF,El-Allawy RM,Hamdy MA

    更新日期:2010-05-01 00:00:00

  • MicroRNA-21 drives the switch to a synthetic phenotype in human saphenous vein smooth muscle cells.

    abstract::Cardiovascular disease is a leading cause of morbidity and mortality. Smooth muscle cells (SMC) comprising the vascular wall can switch phenotypes from contractile to synthetic, which can promote the development of aberrant remodelling and intimal hyperplasia (IH). MicroRNA-21 (miR-21) is a short, non-coding RNA that ...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1751

    authors: Alshanwani AR,Riches-Suman K,O'Regan DJ,Wood IC,Turner NA,Porter KE

    更新日期:2018-07-01 00:00:00

  • Alpha-tocopherol transport in the lung is affected by the apoE genotype--studies in transgenic apoE3 and apoE4 mice.

    abstract::Apolipoprotein E (apoE) is a major constituent of lipoproteins mediating peripheral uptake of lipids including the lipid-soluble vitamin alpha-tocopherol (alpha-toc). In a recent study, we observed significant lower alpha-toc concentrations in the lung of apoE4 compared with apoE3 transgenic mice. In this study, we de...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.177

    authors: Huebbe P,Jofre-Monseny L,Rimbach G

    更新日期:2009-04-01 00:00:00

  • Stability of alkyl-dihydroxyacetonephosphate synthase in human control and peroxisomal disorder fibroblasts.

    abstract::Alkyl-dihydroxyacetonephosphate synthase (alkyl-DHAP synthase) is a peroxisomal enzyme that plays a key role in ether phospholipid biosynthesis. To determine the turnover of alkyl-DHAP synthase in several peroxisomal disorders, pulse-chase experiments were performed. In control fibroblasts, mature alkyl-DHAP synthase ...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1080/713803571

    authors: Biermann J,Gootjes J,Wanders RJ,van den Bosch H

    更新日期:1999-12-01 00:00:00

  • Mutational analysis of the three conserved valine residues of insulin and a proposal of "isosteric residue".

    abstract::To further understand the role of the three conserved Val residues in insulin, B12Val, B18Val, and A3Val, five insulin mutants-[A3Ser]insulin, [B12Thr]insulin, (desB30)[B12Ser]insulin, [B18Thr] insulin, and [B18Leu]insulin--were obtained by means of site-directed mutagenesis and their receptor-binding activities as we...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1080/152165401317291165

    authors: Guo ZY,Tang YH,Zhang Z,Feng YM

    更新日期:2001-12-01 00:00:00

  • Peroxynitrous acid--where is the hydroxyl radical?

    abstract::Peroxynitrite is an inorganic toxin of physiological interest, formed from the diffusion-controlled reaction of superoxide and nitrogen monoxide with a rate constant of (1.6 +/- 0.3) x 10(10) M(-1) s(-1). On the basis of three experiments we conclude that homolysis of the O-O bond in peroxynitrous acid is unlikely: (1...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1080/15216540310001628690

    authors: Kissner R,Nauser T,Kurz C,Koppenol WH

    更新日期:2003-10-01 00:00:00

  • Ambient pH sensing in filamentous fungi: pitfalls in elucidating regulatory hierarchical signaling networks.

    abstract::In this article, the experiments used to construct the ambient pH-signaling network involved in the secretion of enzymes by filamentous fungi have been reviewed, focusing on the phosphate-repressible phosphatases in Aspergillus nidulans. Classic and molecular genetics have been used to demonstrate that proteolysis of ...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1217

    authors: Rossi A,Cruz AH,Santos RS,Silva PM,Silva EM,Mendes NS,Martinez-Rossi NM

    更新日期:2013-11-01 00:00:00

  • PlncRNA-1 is overexpressed in retinoblastoma and regulates retinoblastoma cell proliferation and motility through modulating CBR3.

    abstract::PlncRNA-1 has been suggested to function as an oncogenic role in prostate cancer, colorectal cancer, hepatocellular carcinoma, esophageal squamous cell carcinoma, and gastric cancer. The expression pattern of PlncRNA-1 in retinoblastoma remained unknown. Therefore, the aim of this study was to explore the clinical sig...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1886

    authors: Wang S,Liu J,Yang Y,Hao F,Zhang L

    更新日期:2018-10-01 00:00:00

  • Does a redox cycle provide a mechanism for setting the capacity of neuroglobin to protect cells from apoptosis?

    abstract::We hypothesize that the various, previously reported, reactivities of neuroglobin with redox partners and oxygen provide for the establishment of a redox cycle within cells, such as neurons and retinal rod cells. Using native cell lysates, from cultured human cells of neuronal origin, we have estimated the rate of red...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.566

    authors: Brittain T,Skommer J

    更新日期:2012-05-01 00:00:00

  • Heparin--a unique stimulator of human colon cancer cells' growth.

    abstract::The cancer microenvironment and the interactions between cancer and surrounding tissue cells are thought to play a pivotal role in tumor development and progression. Glycosaminoglycans (GAGs)/proteoglycans (PGs) are major constituents of the extracellular matrix, the composition of which may affect various cellular fu...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.70

    authors: Chatzinikolaou G,Nikitovic D,Asimakopoulou A,Tsatsakis A,Karamanos NK,Tzanakakis GN

    更新日期:2008-05-01 00:00:00

  • 4D bioinformatics: a new look at the ribosome as an example.

    abstract::We have adapted the Java Molecular Viewer (JMV) to virtual reality display environments, through a number of extensions to the Java 3D code. Phylogenetic information derived from multiple alignments (temporal information) can be overlaid onto molecule structures (spatial information). The number of sequences included ...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1080/1521654031000136255

    authors: Quon GT,Gordon P,Sensen CW

    更新日期:2003-04-01 00:00:00

  • Down-regulation of organic anion transporter 2 mRNA expression by nitric oxide in primary cultured rat hepatocytes.

    abstract::Role of nitric oxide (NO) on the expression of organic anion transporter 2 (OAT2) located in sinusoidal domain of hepatocytes has been investigated. Effect of NO generated in vivo in rat and delivered in vitro to hepatocytes was determined. Lipopolysaccharide (LPS) and spermine NONOate (SPER/NO) were selected as the N...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1080/15216540214534

    authors: Cha SH,Kim HP,Jung NH,Lee WK,Kim JY,Cha YN

    更新日期:2002-09-01 00:00:00

  • c-Fos is involved in inhibition of human bladder carcinoma T24 cells by brazilin.

    abstract::Crude brazilin extract from Sappan wood has demonstrated strong anti tumor activity in the mouse model of human bladder carcinoma and clinical trial for intravesical therapy. Purified brazilin was confirmed the most active molecule in inhibition of bladder carcinoma T24 cells. Brazilin decreased proliferation and viab...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1357

    authors: Zhang T,Fan X,Song L,Ren L,Ma E,Zhang S,Ren L,Zheng Y,Zhang J

    更新日期:2015-03-01 00:00:00

  • Evolutionary conservation of the membrane fusion machine.

    abstract::Recent structural studies of proteins mediating membrane fusion reveal intriguing similarities between diverse viral and mammalian systems. Particularly striking is the close similarity between the transmembrane envelope glycoproteins from the retrovirus HTLV-1 and the filovirus Ebola. These similarities suggest simil...

    journal_title:IUBMB life

    pub_type: 杂志文章,评审

    doi:10.1080/713803503

    authors: Poumbourios P,Center RJ,Wilson KA,Kemp BE,Kobe B

    更新日期:1999-08-01 00:00:00

  • Identification of new FGF1 binding partners-Implications for its intracellular function.

    abstract::Besides its classical mode of action through activation of specific receptors at the cell surface, fibroblast growth factor 1 (FGF1) can also cross the cellular membrane and translocate into the cytosol and further to the nucleus. The mechanism of this translocation is described partially, but the role of FGF1 inside ...

    journal_title:IUBMB life

    pub_type: 杂志文章

    doi:10.1002/iub.1480

    authors: Bober J,Olsnes S,Kostas M,Bogacz M,Zakrzewska M,Otlewski J

    更新日期:2016-03-01 00:00:00