Genetic analysis of yeast Yip1p function reveals a requirement for Golgi-localized rab proteins and rab-Guanine nucleotide dissociation inhibitor.

Abstract:

:Yip1p is the first identified Rab-interacting membrane protein and the founder member of the YIP1 family, with both orthologs and paralogs found in all eukaryotic genomes. The exact role of Yip1p is unclear; YIP1 is an essential gene and defective alleles severely disrupt membrane transport and inhibit ER vesicle budding. Yip1p has the ability to physically interact with Rab proteins and the nature of this interaction has led to suggestions that Yip1p may function in the process by which Rab proteins translocate between cytosol and membranes. In this study we have investigated the physiological requirements for Yip1p action. Yip1p function requires Rab-GDI and Rab proteins, and several mutations that abrogate Yip1p function lack Rab-interacting capability. We have previously shown that Yip1p in detergent extracts has the capability to physically interact with Rab proteins in a promiscuous manner; however, a genetic analysis that covers every yeast Rab reveals that the Rab requirement in vivo is exclusively confined to a subset of Rab proteins that are localized to the Golgi apparatus.

journal_name

Genetics

journal_title

Genetics

authors

Chen CZ,Calero M,DeRegis CJ,Heidtman M,Barlowe C,Collins RN

doi

10.1534/genetics.104.032888

keywords:

subject

Has Abstract

pub_date

2004-12-01 00:00:00

pages

1827-41

issue

4

eissn

0016-6731

issn

1943-2631

pii

168/4/1827

journal_volume

168

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Heritable Micro-environmental Variance Covaries with Fitness in an Outbred Population of Drosophila serrata.

    abstract::The genetic basis of stochastic variation within a defined environment, and the consequences of such micro-environmental variance for fitness are poorly understood . Using a multigenerational breeding design in Drosophila serrata, we demonstrated that the micro-environmental variance in a set of morphological wing tra...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.199075

    authors: Sztepanacz JL,McGuigan K,Blows MW

    更新日期:2017-08-01 00:00:00

  • Estimating levels of gene flow in natural populations.

    abstract::The results from a simulation model of selection, mutation and genetic drift in a geographically subdivided population are presented. The infinite-alleles mutation model of Kimura and Crow (1964) is asumed, and both advantageous and deleterious mutations are considered. It is shown that the average frequency of an all...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Slatkin M

    更新日期:1981-10-01 00:00:00

  • Phenotypic and transcriptional plasticity directed by a yeast mitogen-activated protein kinase network.

    abstract::The yeast pheromone/filamentous growth MAPK pathway mediates both mating and invasive-growth responses. The interface between this MAPK module and the transcriptional machinery consists of a network of two MAPKs, Fus3 and Kss1; two regulators, Rst1 and Rst2 (a.k.a. Dig1 and Dig2); and two transcription factors, Ste12 ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Breitkreutz A,Boucher L,Breitkreutz BJ,Sultan M,Jurisica I,Tyers M

    更新日期:2003-11-01 00:00:00

  • Specific alpha- and beta-tubulin isotypes optimize the functions of sensory Cilia in Caenorhabditis elegans.

    abstract::Primary cilia have essential roles in transducing signals in eukaryotes. At their core is the ciliary axoneme, a microtubule-based structure that defines cilium morphology and provides a substrate for intraflagellar transport. However, the extent to which axonemal microtubules are specialized for sensory cilium functi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.110.116996

    authors: Hurd DD,Miller RM,Núñez L,Portman DS

    更新日期:2010-07-01 00:00:00

  • Effects of pleiotropy on predictions concerning mutation-selection balance for polygenic traits.

    abstract::Previous mathematical analyses of mutation-selection balance for metric traits assume that selection acts on the relevant loci only through the character(s) under study. Thus, they implicitly assume that all of the relevant mutation and selection parameters are estimable. A more realistic analysis must recognize that ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Turelli M

    更新日期:1985-09-01 00:00:00

  • Evidence for complex genic interactions between conspecific chromosomes underlying hybrid female sterility in the Drosophila simulans clade.

    abstract::F1 hybrid females between the sibling species Drosophila simulans, Drosophila mauritiana and Drosophila sechellia are completely fertile. However, we have found that female sterility can be observed in F2 backcross females who are homozygous for D. simulans X chromosomes and homozygous for autosomal regions from eithe...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Davis AW,Noonburg EG,Wu CI

    更新日期:1994-05-01 00:00:00

  • Genes Important for Schizosaccharomyces pombe Meiosis Identified Through a Functional Genomics Screen.

    abstract::Meiosis is a specialized cell division that generates gametes, such as eggs and sperm. Errors in meiosis result in miscarriages and are the leading cause of birth defects; however, the molecular origins of these defects remain unknown. Studies in model organisms are beginning to identify the genes and pathways importa...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.117.300527

    authors: Blyth J,Makrantoni V,Barton RE,Spanos C,Rappsilber J,Marston AL

    更新日期:2018-02-01 00:00:00

  • Genetics on the Fly: A Primer on the Drosophila Model System.

    abstract::Fruit flies of the genus Drosophila have been an attractive and effective genetic model organism since Thomas Hunt Morgan and colleagues made seminal discoveries with them a century ago. Work with Drosophila has enabled dramatic advances in cell and developmental biology, neurobiology and behavior, molecular biology, ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.183392

    authors: Hales KG,Korey CA,Larracuente AM,Roberts DM

    更新日期:2015-11-01 00:00:00

  • Haplotype probabilities for multiple-strain recombinant inbred lines.

    abstract::Recombinant inbred lines (RIL) derived from multiple inbred strains can serve as a powerful resource for the genetic dissection of complex traits. The use of such multiple-strain RIL requires a detailed knowledge of the haplotype structure in such lines. Broman (2005) derived the two- and three-point haplotype probabi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.064063

    authors: Teuscher F,Broman KW

    更新日期:2007-03-01 00:00:00

  • Mutations in GCR3, a gene involved in the expression of glycolytic genes in Saccharomyces cerevisiae, suppress the temperature-sensitive growth of hpr1 mutants.

    abstract::To study the functions of DNA topoisomerase I and Hpr1 protein, a suppressor mutant of the temperature-sensitive growth of an hpr1 top1-5ts double mutant was isolated. The isolated triple mutant showed cold-sensitive growth. By complementation of this phenotype, the suppressor gene was cloned. DNA sequencing showed it...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Uemura H,Pandit S,Jigami Y,Sternglanz R

    更新日期:1996-04-01 00:00:00

  • Maternal inheritance of mouse mtDNA in interspecific hybrids: segregation of the leaked paternal mtDNA followed by the prevention of subsequent paternal leakage.

    abstract::The transmission profiles of sperm mtDNA introduced into fertilized eggs were examined in detail in F1 hybrids of mouse interspecific crosses by addressing three aspects. The first is whether the leaked paternal mtDNA in fertilized eggs produced by interspecific crosses was distributed stably to all tissues after the ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shitara H,Hayashi JI,Takahama S,Kaneda H,Yonekawa H

    更新日期:1998-02-01 00:00:00

  • Interval mapping of multiple quantitative trait loci.

    abstract::The interval mapping method is widely used for the mapping of quantitative trait loci (QTLs) in segregating generations derived from crosses between inbred lines. The efficiency of detecting and the accuracy of mapping multiple QTLs by using genetic markers are much increased by employing multiple QTL models instead o...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Jansen RC

    更新日期:1993-09-01 00:00:00

  • vph6 mutants of Saccharomyces cerevisiae require calcineurin for growth and are defective in vacuolar H(+)-ATPase assembly.

    abstract::We have characterized a Saccharomyces cerevisiae mutant strain that is hypersensitive to cyclosporin A (CsA) and FK506, immunosuppressants that inhibit calcineurin, a serine-threonine-specific phosphatase (PP2B). A single nuclear mutation, designated cev1 for calcineurin essential for viability, is responsible for the...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hemenway CS,Dolinski K,Cardenas ME,Hiller MA,Jones EW,Heitman J

    更新日期:1995-11-01 00:00:00

  • Nonlinear tests for genomewide association studies.

    abstract::As millions of single-nucleotide polymorphisms (SNPs) have been identified and high-throughput genotyping technologies have been rapidly developed, large-scale genomewide association studies are soon within reach. However, since a genomewide association study involves a large number of SNPs it is therefore nearly impo...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.060491

    authors: Zhao J,Jin L,Xiong M

    更新日期:2006-11-01 00:00:00

  • New roles for old characters: an educational primer for use with "Vps factors are required for efficient transcription elongation in budding yeast".

    abstract::An article from Alan Hinnebusch's laboratory in the March 2013 issue of GENETICS establishes an exciting new link between proteins with well-established roles in the endomembrane system and the process of transcription elongation. This Primer article provides tools needed for students to fully appreciate, analyze, and...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.150763

    authors: Duina AA

    更新日期:2013-05-01 00:00:00

  • GeneImp: Fast Imputation to Large Reference Panels Using Genotype Likelihoods from Ultralow Coverage Sequencing.

    abstract::We address the task of genotype imputation to a dense reference panel given genotype likelihoods computed from ultralow coverage sequencing as inputs. In this setting, the data have a high-level of missingness or uncertainty, and are thus more amenable to a probabilistic representation. Most existing imputation algori...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.117.200063

    authors: Spiliopoulou A,Colombo M,Orchard P,Agakov F,McKeigue P

    更新日期:2017-05-01 00:00:00

  • Unidirectional incompatibility in Drosophila simulans: inheritance, geographic variation and fitness effects.

    abstract::In California, Drosophila simulans females from some populations (type W) produce relatively few adult progeny when crossed to males from some other populations (type R), but the productivity of the reciprocal cross is comparable to within-population controls. These two incompatibility types are widespread in North Am...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hoffmann AA,Turelli M

    更新日期:1988-06-01 00:00:00

  • Excursions along the Interface between Disruptive and Stabilizing Selection.

    abstract::When a polygenic character is exposed to natural selection in which the curve giving fitness as a function of phenotype is a mixture of two Gaussian (normal) curves, the population may respond either by evolving to a specialized phenotype near one of the two optimum phenotypes, or by evolving to a generalized phenotyp...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Felsenstein J

    更新日期:1979-11-01 00:00:00

  • Diverse roles for histone H2A modifications in DNA damage response pathways in yeast.

    abstract::There are many types of DNA damage that are repaired by a multiplicity of different repair pathways. All damage and repair occur in the context of chromatin, and histone modifications are involved in many repair processes. We have analyzed the roles of H2A and its modifications in repair by mutagenizing modifiable res...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.063792

    authors: Moore JD,Yazgan O,Ataian Y,Krebs JE

    更新日期:2007-05-01 00:00:00

  • The ribosomes of Drosophila. II. Studies on intraspecific variation.

    abstract::Electrophoretic comparisons of 40S and 55S ribosomal subunit proteins from 18 strains of Drosophila melanogaster revealed the virtual absence of allelic variation. More detailed two-dimensional studies on the large subunit proteins in 6 of the strains demonstrated additional complexity but still no interstrain variati...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Berger EM,Weber L

    更新日期:1974-12-01 00:00:00

  • Counteracting Environmental Chemicals with Coenzyme Q10: An Educational Primer for Use with "Antioxidant CoQ10 Restores Fertility by Rescuing Bisphenol A-Induced Oxidative DNA Damage in the Caenorhabditis elegans Germline".

    abstract::Environmental toxicants are chemicals that negatively affect human health. Although there are numerous ways to limit exposure, the ubiquitous nature of certain environmental toxicants makes it impossible to avoid them entirely. Consequently, scientists are continuously working toward developing strategies for combatin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.120.303577

    authors: Bradford BR,Briand NE,Fassnacht N,Gervasio ED,Nowakowski AM,FitzGibbon TC,Maurina S,Benjamin AV,Kelly M,Checchi PM

    更新日期:2020-12-01 00:00:00

  • Genome-wide epigenetic perturbation jump-starts patterns of heritable variation found in nature.

    abstract::We extensively phenotyped 6000 Arabidopsis plants with experimentally perturbed DNA methylomes as well as a diverse panel of natural accessions in a common garden. We found that alterations in DNA methylation not only caused heritable phenotypic diversity but also produced heritability patterns closely resembling thos...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.128744

    authors: Roux F,Colomé-Tatché M,Edelist C,Wardenaar R,Guerche P,Hospital F,Colot V,Jansen RC,Johannes F

    更新日期:2011-08-01 00:00:00

  • Notch signaling is antagonized by SAO-1, a novel GYF-domain protein that interacts with the E3 ubiquitin ligase SEL-10 in Caenorhabditis elegans.

    abstract::Notch signaling pathways can be regulated through a variety of cellular mechanisms, and genetically compromised systems provide useful platforms from which to search for the responsible modulators. The Caenorhabditis elegans gene aph-1 encodes a component of γ-secretase, which is essential for Notch signaling events t...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.136804

    authors: Hale VA,Guiney EL,Goldberg LY,Haduong JH,Kwartler CS,Scangos KW,Goutte C

    更新日期:2012-03-01 00:00:00

  • The short life span of Saccharomyces cerevisiae sgs1 and srs2 mutants is a composite of normal aging processes and mitotic arrest due to defective recombination.

    abstract::Evidence from many organisms indicates that the conserved RecQ helicases function in the maintenance of genomic stability. Mutation of SGS1 and WRN, which encode RecQ homologues in budding yeast and humans, respectively, results in phenotypes characteristic of premature aging. Mutation of SRS2, another DNA helicase, c...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: McVey M,Kaeberlein M,Tissenbaum HA,Guarente L

    更新日期:2001-04-01 00:00:00

  • Interactions of UNC-34 Enabled with Rac GTPases and the NIK kinase MIG-15 in Caenorhabditis elegans axon pathfinding and neuronal migration.

    abstract::Many genes that affect axon pathfinding and cell migration have been identified. Mechanisms by which these genes and the molecules they encode interact with one another in pathways and networks to control developmental events are unclear. Rac GTPases, the cytoskeletal signaling molecule Enabled, and NIK kinase have al...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.046359

    authors: Shakir MA,Gill JS,Lundquist EA

    更新日期:2006-02-01 00:00:00

  • Genetic characterization of the sufj frameshift suppressor in Salmonella typhimurium.

    abstract::A new suppressor of +1 frameshift mutations has been isolated in Salmonella typhimurium. This suppressor, sufJ, maps at minute 89 on the Salmonella genetic map between the argH and rpo(rif) loci, closely linked to the gene for the ochre suppressor tyrU(supM). The suppressor mutation is dominant to its wild-type allele...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bossi L,Kohno T,Roth JR

    更新日期:1983-01-01 00:00:00

  • Gene expression analysis of the function of the male-specific lethal complex in Drosophila.

    abstract::Dosage compensation refers to the equal expression of X-linked genes despite the difference in copy number between the two sexes. The male-specific lethal (MSL) complex is concentrated on the X chromosome in males. A gene expression assay for embryos was developed to examine the function of this complex. In mutant mal...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.036020

    authors: Bhadra MP,Bhadra U,Kundu J,Birchler JA

    更新日期:2005-04-01 00:00:00

  • Specificity of insertion by the translocatable tetracycline-resistance element Tn10.

    abstract::Genetic analysis of 131 independent transpositions of the tetracycline-resistance element Tn10 from a single site in phage P22 into the histidine operon of Salmonella typhimurium reveals that Tn10 insertions are not randomly distributed along this chromosomal target. The insertions occur in 22 different "clusters"; in...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kleckner N,Steele DA,Reichardt K,Botstein D

    更新日期:1979-08-01 00:00:00

  • A redundant function for the N-terminal tail of Ndc80 in kinetochore-microtubule interaction in Saccharomyces cerevisiae.

    abstract::The N-terminal tail of Ndc80 is essential for kinetochore-microtubule binding in human cells but is not required for viability in yeast. We show that the yeast Ndc80 tail is required for timely mitotic progression and accurate chromosome segregation. The tail is essential when cells are limited for Dam1, demonstrating...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.112.143818

    authors: Demirel PB,Keyes BE,Chaterjee M,Remington CE,Burke DJ

    更新日期:2012-10-01 00:00:00

  • The Genomic Architecture of Flowering Time Varies Across Space and Time in Mimulus guttatus.

    abstract::The degree to which genomic architecture varies across space and time is central to the evolution of genomes in response to natural selection. Bulked-segregant mapping combined with pooled sequencing provides an efficient means to estimate the effect of genetic variants on quantitative traits. We develop a novel likel...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.117.201483

    authors: Monnahan PJ,Kelly JK

    更新日期:2017-07-01 00:00:00