Resolution of the novel immune-type receptor gene cluster in zebrafish.

Abstract:

:The novel immune-type receptor (NITR) genes encode a unique multigene family of leukocyte regulatory receptors, which possess an extracellular Ig variable (V) domain and may function in innate immunity. Artificial chromosomes that encode zebrafish NITRs have been assembled into a contig spanning approximately 350 kb. Resolution of the complete NITR gene cluster has led to the identification of eight previously undescribed families of NITRs and has revealed the presence of C-type lectins within the locus. A maximum haplotype of 36 NITR genes (138 gene sequences in total) can be grouped into 12 distinct families, including inhibitory and activating receptors. An extreme level of interindividual heterozygosity is reflected in allelic polymorphisms, haplotype variation, and family-specific isoform complexity. In addition, the exceptional diversity of NITR sequences among species suggests divergent evolution of this multigene family with a birth-and-death process of member genes. High-confidence modeling of Nitr V-domain structures reveals a significant shift in the spatial orientation of the Ig fold, in the region of highest interfamily variation, compared with Ig V domains. These studies resolve a complete immune gene cluster in zebrafish and indicate that the NITRs represent the most complex family of activating/inhibitory surface receptors thus far described.

authors

Yoder JA,Litman RT,Mueller MG,Desai S,Dobrinski KP,Montgomery JS,Buzzeo MP,Ota T,Amemiya CT,Trede NS,Wei S,Djeu JY,Humphray S,Jekosch K,Hernandez Prada JA,Ostrov DA,Litman GW

doi

10.1073/pnas.0405242101

keywords:

subject

Has Abstract

pub_date

2004-11-02 00:00:00

pages

15706-11

issue

44

eissn

0027-8424

issn

1091-6490

pii

0405242101

journal_volume

101

pub_type

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